HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U like 1) - Rat Genome Database

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Pathways
Gene: HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U like 1) Chlorocebus sabaeus
Analyze
Symbol: HNRNPUL1
Name: heterogeneous nuclear ribonucleoprotein U like 1 (Ensembl:heteroous nuclear ribonucleoprotein U like 1)
RGD ID: 18411704
Description: ENCODES a protein that exhibits enzyme binding (inferred); RNA binding (inferred); INVOLVED IN alternative mRNA splicing, via spliceosome (inferred); DNA-templated transcription (inferred); FOUND IN nucleoplasm (inferred); nucleus (inferred); ribonucleoprotein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heterogeneous nuclear ribonucleoprotein U-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,580,856 - 35,628,263 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl635,582,849 - 35,627,195 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607313,816,041 - 13,863,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HNRNPUL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,580,856 - 35,628,263 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl635,582,849 - 35,627,195 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607313,816,041 - 13,863,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HNRNPUL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,262,557 - 41,307,787 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,262,496 - 41,307,787 (+)Ensemblhg38GRCh38
GRCh371941,768,462 - 41,813,692 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,460,264 - 46,505,438 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341946,460,263 - 46,505,438NCBI
Celera1938,568,542 - 38,613,960 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,200,850 - 38,246,269 (+)NCBIHuRef
CHM1_11941,768,089 - 41,813,503 (+)NCBICHM1_1
T2T-CHM13v2.01944,083,416 - 44,128,645 (+)NCBIT2T-CHM13v2.0
Hnrnpul1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39725,420,586 - 25,455,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl725,420,590 - 25,454,182 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38725,721,161 - 25,756,268 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,721,165 - 25,754,757 (-)Ensemblmm10GRCm38
MGSCv37726,507,055 - 26,539,739 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36725,430,794 - 25,471,817 (-)NCBIMGSCv36mm8
Celera720,330,948 - 20,363,632 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map714.0NCBI
Hnrnpul1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,356,182 - 90,391,923 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl190,356,182 - 90,390,370 (-)EnsemblGRCr8
mRatBN7.2181,228,404 - 81,264,121 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,228,404 - 81,262,592 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx186,620,591 - 86,654,781 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0195,172,109 - 95,206,035 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,376,388 - 88,410,580 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,512,745 - 82,548,446 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,512,745 - 82,546,937 (-)Ensemblrn6Rnor6.0
Rnor_5.0183,774,021 - 83,808,198 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4180,926,575 - 80,960,767 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera175,667,871 - 75,702,062 (-)NCBICelera
RGSC_v3.1181,004,696 - 81,038,905 (-)NCBI
Cytogenetic Map1q21NCBI
Hnrnpul1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555220,450 - 257,631 (+)Ensembl
ChiLan1.0NW_004955555219,185 - 254,979 (+)NCBIChiLan1.0ChiLan1.0
HNRNPUL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,472,533 - 47,517,768 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,340,694 - 49,386,543 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,255,183 - 38,300,877 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,762,459 - 46,808,377 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,762,459 - 46,808,374 (+)EnsemblpanPan2panpan1.1
HNRNPUL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,661,955 - 112,699,112 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,662,429 - 112,697,403 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1112,065,666 - 112,102,719 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01113,259,749 - 113,296,815 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,260,032 - 113,295,289 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,820,873 - 112,857,926 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,453,227 - 112,490,274 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,446,564 - 113,483,636 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hnrnpul1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,260,235 - 15,295,231 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366613,690,137 - 3,723,391 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366613,688,328 - 3,723,405 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPUL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,280,211 - 49,315,669 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1649,280,296 - 49,315,967 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,075,284 - 45,111,110 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Hnrnpul1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907109,093 - 143,603 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624907107,426 - 144,300 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Hnrnpul1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12169,040,068 - 169,075,185 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in HNRNPUL1
1111 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000001572   ⟹   ENSCSAP00000014508
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl635,582,849 - 35,627,195 (+)Ensembl
RefSeq Acc Id: XM_007996888   ⟹   XP_007995079
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,582,693 - 35,628,263 (+)NCBI
Vero_WHO_p1.0NW_02366607313,817,852 - 13,863,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007996889   ⟹   XP_007995080
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,582,697 - 35,628,263 (+)NCBI
Vero_WHO_p1.0NW_02366607313,818,196 - 13,863,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007996890   ⟹   XP_007995081
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,582,949 - 35,628,263 (+)NCBI
Vero_WHO_p1.0NW_02366607313,818,050 - 13,863,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007996891   ⟹   XP_007995082
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,583,370 - 35,628,263 (+)NCBI
Vero_WHO_p1.0NW_02366607313,818,544 - 13,863,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007996892   ⟹   XP_007995083
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,580,856 - 35,628,263 (+)NCBI
Vero_WHO_p1.0NW_02366607313,816,041 - 13,863,308 (+)NCBI
Sequence:
RefSeq Acc Id: XP_007995083   ⟸   XM_007996892
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007995079   ⟸   XM_007996888
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007995080   ⟸   XM_007996889
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S0W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007995081   ⟸   XM_007996890
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007995082   ⟸   XM_007996891
- Peptide Label: isoform X3
Ensembl Acc Id: ENSCSAP00000014508   ⟸   ENSCSAT00000001572


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003544 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001572.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.30 UniProtKB/TrEMBL
  2.60.120.920 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SAP_dom UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  SPRY_hnRNP_U UniProtKB/TrEMBL
NCBI Gene HNRNPUL1 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER UniProtKB/TrEMBL
  PTHR12381:SF41 UniProtKB/TrEMBL
Pfam AAA_33 UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
SMART SAP UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF68906 UniProtKB/TrEMBL
UniProt A0A0D9S0W9 ENTREZGENE, UniProtKB/TrEMBL