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Gene: Hnrnpul1 (heterogeneous nuclear ribonucleoprotein U like 1) Ictidomys tridecemlineatus

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Symbol:

Hnrnpul1

Name:

heterogeneous nuclear ribonucleoprotein U like 1

RGD ID:

12731263

Description:

ENCODES a protein that exhibits enzyme binding (inferred); RNA binding (inferred); INVOLVED IN alternative mRNA splicing, via spliceosome (inferred); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog); FOUND IN synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

heterogeneous nuclear ribonucleoprotein U like 1, transcript variant X1; heterogeneous nuclear ribonucleoprotein U like 1, transcript variant X2; heterogeneous nuclear ribonucleoprotein U like 1, transcript variant X3; heterogeneous nuclear ribonucleoprotein U like 1, transcript variant X4; heterogeneous nuclear ribonucleoprotein U like 1, transcript variant X5; heterogeneous nuclear ribonucleoprotein U like 1, transcript variant X6; heterogeneous nuclear ribonucleoprotein U-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	15,260,235 - 15,295,231 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	3,690,137 - 3,723,391 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	3,688,328 - 3,723,405 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Carpenter Syndrome 2 (ISO)

congenital hypoplastic anemia (ISO)

craniosynostosis 1 (ISO)

Diamond-Blackfan anemia (ISO)

maple syrup urine disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alternative mRNA splicing, via spliceosome (IEA)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

synapse (IEA,ISO)

Molecular Function

enzyme binding (IEA)

protein binding (ISO)

RNA binding (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Hnrnpul1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	15,260,235 - 15,295,231 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	3,690,137 - 3,723,391 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	3,688,328 - 3,723,405 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPUL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	41,262,557 - 41,307,787 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	41,262,496 - 41,307,787 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	41,768,462 - 41,813,692 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	46,460,264 - 46,505,438 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	46,460,263 - 46,505,438	NCBI
Celera	19	38,568,542 - 38,613,960 (+)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	38,200,850 - 38,246,269 (+)	NCBI		HuRef
CHM1_1	19	41,768,089 - 41,813,503 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	44,083,416 - 44,128,645 (+)	NCBI		T2T-CHM13v2.0

Hnrnpul1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	25,420,586 - 25,455,695 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	25,420,590 - 25,454,182 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	25,721,161 - 25,756,268 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	25,721,165 - 25,754,757 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	26,507,055 - 26,539,739 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	25,430,794 - 25,471,817 (-)	NCBI		MGSCv36	mm8
Celera	7	20,330,948 - 20,363,632 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	14.0	NCBI

Hnrnpul1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	90,356,182 - 90,391,923 (-)	NCBI		GRCr8
mRatBN7.2	1	81,228,404 - 81,264,121 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	81,228,404 - 81,262,592 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	86,620,591 - 86,654,781 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	95,172,109 - 95,206,035 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	88,376,388 - 88,410,580 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	82,512,745 - 82,548,446 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	82,512,745 - 82,546,937 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	83,774,021 - 83,808,198 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	80,926,575 - 80,960,767 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	81,004,696 - 81,038,905 (-)	NCBI
Celera	1	75,667,871 - 75,702,062 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Hnrnpul1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955555	220,450 - 257,631 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955555	219,185 - 254,979 (+)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPUL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	47,472,533 - 47,517,768 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	49,340,694 - 49,386,543 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	38,255,183 - 38,300,877 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	46,762,459 - 46,808,377 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	46,762,459 - 46,808,374 (+)	Ensembl	panpan1.1		panPan2

HNRNPUL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	112,661,955 - 112,699,112 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	112,662,429 - 112,697,403 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	112,065,666 - 112,102,719 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	113,259,749 - 113,296,815 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	113,260,032 - 113,295,289 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	112,820,873 - 112,857,926 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	112,453,227 - 112,490,274 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	113,446,564 - 113,483,636 (-)	NCBI		UU_Cfam_GSD_1.0

HNRNPUL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	49,280,211 - 49,315,669 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	49,280,296 - 49,315,967 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	45,075,284 - 45,111,110 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNRNPUL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	35,580,856 - 35,628,263 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	35,582,849 - 35,627,195 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	13,816,041 - 13,863,322 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hnrnpul1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624907	109,093 - 143,603 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624907	107,426 - 144,300 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005336455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005336456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005336458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005336459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013363416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013363417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000001608 ⟹ ENSSTOP00000001439

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936661	3,690,137 - 3,723,391 (+)	Ensembl

RefSeq Acc Id:

XM_005336455 ⟹ XP_005336512

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,262,074 - 15,294,665 (+)	NCBI
SpeTri2.0	NW_004936661	3,690,143 - 3,723,405 (+)	NCBI

Sequence:

show sequence

TGGGAGGCCGGGCCGGGCTCGGGGGCCGCCCCGGGGGCCCGGGCCATGGATGTGCGTCGTCTGA
AGGTGAACGAACTTCGCGAGGAGCTGCAGCGCCGCGGCCTGGACACTCGCGGCCTTAAGGCCGA
GCTTGCTGAGCGGCTGCTGGCGGCGTTGGAGGCCGAGGAGCCTGACGACGAGCGGGAGCTCGAG
GCCGACGACGAACCGGGGAGACCCGGACACAACAACGAGGAGGTCGAGACCGAGGGGGGCTCCG
AGCTGGAGGGGACCGCGCAGCCACCGCCGCCCGGGCTGCAGCCGCACCCCGAGCCCGGCGGCTA
CCCGGGGCCGGACGGACATTATGTCATGGACAATATTACCAGGCAGAACCAATTCTACGAGACC
CAAGTCATCAAGCAAGAAAATGAGTCGGGCTATGAGAGGAGACCTCTAGACATGGAGCCACTAC
AGCAGGCCTACCGGCCAGTAGAAGTGAAGACAGAGATGAAGCAAGAAGCACCCCCCAGCTTCCT
GCCACCCGAAGCTTCTCAACTCAAGCCAGACAGGCAGCAATTTCAAAGTCGAAAGAGGCCTTAT
GAAGAAAACCGGGGACGTGGATATTTCGAGCACCGAGAGGATAGGAGGGGTCGTTCTCCTCAGC
CTCCTGCTGAAGAAGATGAAGATGACTTTGATGATACCCTTGTTGCCATCGACACATATAACTG
CGACCTGCATTTCAAGGTGGCCCGAGACCGGAGTAGTGGTTATCCACTTACTATTGAGGGCTTT
GCATACCTGTGGTCAGGAGCCCGTGCCAGCTATGGGGTCAGAAGGGGTCGTGTATGTTTCGAGA
TGAAGATCAATGAGGAAATCTCCGTGAAGCACCTCCCTTCTACAGAGCCTGACCCCCATGTTGT
CCGTATCGGCTGGTCCCTGGACTCTTGCAGCACCCAGCTAGGCGAAGAGCCTTTCTCCTATGGC
TATGGAGGCACAGGGAAGAAGTCCACTAATAGCCGGTTTGAAAACTATGGAGACAAGTTTGCAG
AAAATGATGTGATTGGCTGCTTTGCGGACTTTGAATGTGGAAATGATGTGGAACTTTCATTTAC
CAAGAATGGGAAGTGGATGGGCATTGCCTTCCGAATCCAGAAAGAAGCATTGGGGGGTCAGGCC
CTCTACCCTCATGTTCTGGTAAAGAATTGTGCTGTGGAGTTCAACTTCGGGCAGAGGGCAGAGC
CCTACTGTTCTGTCCTCCCGGGATTCACTTTCATCCAGCACCTTCCCCTTAGTGAGCGGATCCG
GGGCACTGTTGGACCAAAGAGCAAGGCAGAGTGTGAGATTCTGATGATGGTGGGCCTGCCCGCT
GCTGGCAAGACCACATGGGCCATCAAACATGCAGCCTCCAATCCTTCCAAGAAGTACAACATCC
TGGGTACCAATGCCATTATGGATAAGATGCGGGTAATGGGCCTGCGCCGGCAGAGGAATTATGC
TGGTCGCTGGGACGTCTTGATCCAACAGGCTACCCAGTGCCTCAACCGTCTCATCCAGATTGCT
GCTCGCAAGAAACGCAACTATATTCTAGATCAGACAAATGTTTATGGGTCAGCCCAGAGACGAA
AAATGAGACCATTTGAAGGCTTCCAACGAAAAGCTATTGTAATTTGTCCCACTGACGAGGACCT
GAAAGACCGAACAATAAAGCGCACCGATGAGGAAGGGAAGGATGTCCCTGATCATGCGGTCTTA
GAAATGAAAGCCAACTTCACATTACCTGATGTCGGGGACTTCCTGGATGAAGTTCTGTTCATTG
AGCTGCAGCGGGAAGAAGCAGACAAGCTGGTGAGGCAGTACAACGAGGAGGGCCGCAAGGCTGG
GCCACCCCCTGAAAAGCGCTTTGACAACCGAGGTGGTGGTGGCTTCCGGGGCCGCGGAGGTGGC
GGCGGTTTCCAGCGCTATGACAACAGAGGCCCCCCTGGAGGCAACCGAGGAGGCTTCCAGAACC
GAGGGGGAGGCAGTGGTGGTGGAGGCAACTACCGAGGAGGTTTCAACCGCAGTGGAGGTGGTGG
CTACAACCAGAACCGCTGGGGTAACAACAACCGGGATAACAACAACTCCAACAACCGAGGCAGC
TATAACCGGGCTCCCCAGCAGCAGCCACCACCACAGCAGCCGCCACCACCACAACCACCACCAC
AGCAGCCGCCGCCACCACCCAGCTATAGCCCTGCTCGTAACCCACCAGGTGCTGGCAGCTACAA
CAAGAGCAGCAGCATCCCTGGCTCGAGCGCTAATACCAGCACCCCTACGGTCAGCAGCTACAGC
CCCCCACAGCCGAGTTACAGCCAGCCACCCTACAGCCAGGGAGGTTATAGCCAGGGCTATACAG
CCCCACCACCTCCACCTCCGCCACCACCTGCCTACAACTATGGAAGCTACGGTGGCTACAACCC
AGCCCCCTATACTCCGCCACCACCGCCCACGGCACAGACCTACCCTCAGCCCAGCTATAACCAG
TATCAGCAGTATGCCCAGCAGTGGAACCAGTACTATCAGAACCAGGGCCAGTGGCCGCCATACT
ATGGGAACTACGACTACGGGAGCTACTCCGGCAGCACACAGGGTGGCACAAGCACACAGTAGCC
AGTGTGTCTGGAGGCTCCCGGGGCCGCTGCCGGCTTCCTGCACCAGCGCCTGCCTCGGCCCCTT
CTCTGGCCCCTCCTCTACCCCCACCGGGTCCTGTGGTGCTGGGGATGGGGTCATCCCAGAGCTG
CCTCCCTCCAGCCCACTGCCTCTCCTTTGGGGGAGGGGTCTTCTCCCCCACAGGCCAGGCAATT
TTCTCTGGATTCAAACAGGCAACAATGACCTTTTATTTTGTTTGTCCCCTCCATCTCCCACCTC
TTCCTTTTCCTCCTTGCCCCTTTTTGACTGAAAATCCCTCTTTCCCTTGGTCATCAGTGAGGCC
ACAGTGACTAAGGGGAAGACCCCTTCCTGTTTGCTCCTCCCAGCCCTGCTCCAGCCCCTCAGCT
TCCCAGACCCTCATGCAGTTGGTTGTAAATTCTTCCAGGAGCTGTTTTACTGTCTACTTTTCAG
GATTAAAAAAAAAAAAAAAAAATCAAAAACTTAAAAAAAAAAAGTTTAAAAAAGCAAAAGCAAA
TGTGGAGGGAGGAAGCAGCAACATATTTTTTTGGTAATTATGCTTTTTTTTTAATTTTTAGAAT
TTGTCTGTTTTTACTGTGGGTCGGCCGTTGATACTTCATCAAAATAACCATTTCTTTGCTGAGT
TCAGGTGACCGAGGAAGAGCCACACCCTCGAAACAAAACAAAACACACAAACAAAAAAAACCAC
AGAATCATCTTTAACCTAACTTTTTATACGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCT
TCTGTGTTCAGTTGAATTGTAACTGCTTTTTGTATTTGGAGAGAGTGTGACTATTGAACTTGAA
ACCTTTTATTCTGGGCGTCTTGGTAGTTTCTGGTGGGATTAAGCGGGTGAGAGGGTGAAGGGAA
GGTGGGGGGTTCTTTCCCTTCAGAATATGAAGTTTCCCCCACAGCCTCCTCTCCAATGCCCTCC
CAGGTGCCAGACCTCAAGTTTTTCCTACAGTGATATACTTTGATTATTCTTACTTCCCCTTTAC
CCATGTTTTAACAGGATTTTAACAAACTGCACTTATTAAGAAATGTGTTTGCCCTGTTTTGTTT
TGTTTTGTTTTGTTTTGTTTTGTTTTCCTTCAATAAATGACATGGCACCTCCTAGCAGGAAGGA
AGCAGGATCAAAACCCTGAA

hide sequence

RefSeq Acc Id:

XM_005336456 ⟹ XP_005336513

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,262,068 - 15,295,231 (+)	NCBI
SpeTri2.0	NW_004936661	3,690,143 - 3,723,405 (+)	NCBI

Sequence:

show sequence

TGGGAGGCCGGGCCGGGCTCGGGGGCCGCCCCGGGGGCCCGGGCCATGGATGTGCGTCGTCTGA
AGGTGAACGAACTTCGCGAGGAGCTGCAGCGCCGCGGCCTGGACACTCGCGGCCTTAAGGCCGA
GCTTGCTGAGCGGCTGCTGGCGGCGTTGGAGGCCGAGGAGCCTGACGACGAGCGGGAGCTCGAG
GCCGACGACGAACCGGGGAGACCCGGACACAACAACGAGGAGGTCGAGACCGAGGGGGGCTCCG
AGCTGGAGGGGACCGCGCAGCCACCGCCGCCCGGGCTGCAGCCGCACCCCGAGCCCGGCGGCTA
CCCGGGGCCGGACGGACATTATGTCATGGACAATATTACCAGGCAGAACCAATTCTACGAGACC
CAAGTCATCAAGCAAGAAAATGAGTCGGGCTATGAGAGGAGACCTCTAGACATGGAGCCACTAC
AGCAGGCCTACCGGCCAGAAGTGAAGACAGAGATGAAGCAAGAAGCACCCCCCAGCTTCCTGCC
ACCCGAAGCTTCTCAACTCAAGCCAGACAGGCAGCAATTTCAAAGTCGAAAGAGGCCTTATGAA
GAAAACCGGGGACGTGGATATTTCGAGCACCGAGAGGATAGGAGGGGTCGTTCTCCTCAGCCTC
CTGCTGAAGAAGATGAAGATGACTTTGATGATACCCTTGTTGCCATCGACACATATAACTGCGA
CCTGCATTTCAAGGTGGCCCGAGACCGGAGTAGTGGTTATCCACTTACTATTGAGGGCTTTGCA
TACCTGTGGTCAGGAGCCCGTGCCAGCTATGGGGTCAGAAGGGGTCGTGTATGTTTCGAGATGA
AGATCAATGAGGAAATCTCCGTGAAGCACCTCCCTTCTACAGAGCCTGACCCCCATGTTGTCCG
TATCGGCTGGTCCCTGGACTCTTGCAGCACCCAGCTAGGCGAAGAGCCTTTCTCCTATGGCTAT
GGAGGCACAGGGAAGAAGTCCACTAATAGCCGGTTTGAAAACTATGGAGACAAGTTTGCAGAAA
ATGATGTGATTGGCTGCTTTGCGGACTTTGAATGTGGAAATGATGTGGAACTTTCATTTACCAA
GAATGGGAAGTGGATGGGCATTGCCTTCCGAATCCAGAAAGAAGCATTGGGGGGTCAGGCCCTC
TACCCTCATGTTCTGGTAAAGAATTGTGCTGTGGAGTTCAACTTCGGGCAGAGGGCAGAGCCCT
ACTGTTCTGTCCTCCCGGGATTCACTTTCATCCAGCACCTTCCCCTTAGTGAGCGGATCCGGGG
CACTGTTGGACCAAAGAGCAAGGCAGAGTGTGAGATTCTGATGATGGTGGGCCTGCCCGCTGCT
GGCAAGACCACATGGGCCATCAAACATGCAGCCTCCAATCCTTCCAAGAAGTACAACATCCTGG
GTACCAATGCCATTATGGATAAGATGCGGGTAATGGGCCTGCGCCGGCAGAGGAATTATGCTGG
TCGCTGGGACGTCTTGATCCAACAGGCTACCCAGTGCCTCAACCGTCTCATCCAGATTGCTGCT
CGCAAGAAACGCAACTATATTCTAGATCAGACAAATGTTTATGGGTCAGCCCAGAGACGAAAAA
TGAGACCATTTGAAGGCTTCCAACGAAAAGCTATTGTAATTTGTCCCACTGACGAGGACCTGAA
AGACCGAACAATAAAGCGCACCGATGAGGAAGGGAAGGATGTCCCTGATCATGCGGTCTTAGAA
ATGAAAGCCAACTTCACATTACCTGATGTCGGGGACTTCCTGGATGAAGTTCTGTTCATTGAGC
TGCAGCGGGAAGAAGCAGACAAGCTGGTGAGGCAGTACAACGAGGAGGGCCGCAAGGCTGGGCC
ACCCCCTGAAAAGCGCTTTGACAACCGAGGTGGTGGTGGCTTCCGGGGCCGCGGAGGTGGCGGC
GGTTTCCAGCGCTATGACAACAGAGGCCCCCCTGGAGGCAACCGAGGAGGCTTCCAGAACCGAG
GGGGAGGCAGTGGTGGTGGAGGCAACTACCGAGGAGGTTTCAACCGCAGTGGAGGTGGTGGCTA
CAACCAGAACCGCTGGGGTAACAACAACCGGGATAACAACAACTCCAACAACCGAGGCAGCTAT
AACCGGGCTCCCCAGCAGCAGCCACCACCACAGCAGCCGCCACCACCACAACCACCACCACAGC
AGCCGCCGCCACCACCCAGCTATAGCCCTGCTCGTAACCCACCAGGTGCTGGCAGCTACAACAA
GAGCAGCAGCATCCCTGGCTCGAGCGCTAATACCAGCACCCCTACGGTCAGCAGCTACAGCCCC
CCACAGCCGAGTTACAGCCAGCCACCCTACAGCCAGGGAGGTTATAGCCAGGGCTATACAGCCC
CACCACCTCCACCTCCGCCACCACCTGCCTACAACTATGGAAGCTACGGTGGCTACAACCCAGC
CCCCTATACTCCGCCACCACCGCCCACGGCACAGACCTACCCTCAGCCCAGCTATAACCAGTAT
CAGCAGTATGCCCAGCAGTGGAACCAGTACTATCAGAACCAGGGCCAGTGGCCGCCATACTATG
GGAACTACGACTACGGGAGCTACTCCGGCAGCACACAGGGTGGCACAAGCACACAGTAGCCAGT
GTGTCTGGAGGCTCCCGGGGCCGCTGCCGGCTTCCTGCACCAGCGCCTGCCTCGGCCCCTTCTC
TGGCCCCTCCTCTACCCCCACCGGGTCCTGTGGTGCTGGGGATGGGGTCATCCCAGAGCTGCCT
CCCTCCAGCCCACTGCCTCTCCTTTGGGGGAGGGGTCTTCTCCCCCACAGGCCAGGCAATTTTC
TCTGGATTCAAACAGGCAACAATGACCTTTTATTTTGTTTGTCCCCTCCATCTCCCACCTCTTC
CTTTTCCTCCTTGCCCCTTTTTGACTGAAAATCCCTCTTTCCCTTGGTCATCAGTGAGGCCACA
GTGACTAAGGGGAAGACCCCTTCCTGTTTGCTCCTCCCAGCCCTGCTCCAGCCCCTCAGCTTCC
CAGACCCTCATGCAGTTGGTTGTAAATTCTTCCAGGAGCTGTTTTACTGTCTACTTTTCAGGAT
TAAAAAAAAAAAAAAAAAATCAAAAACTTAAAAAAAAAAAGTTTAAAAAAGCAAAAGCAAATGT
GGAGGGAGGAAGCAGCAACATATTTTTTTGGTAATTATGCTTTTTTTTTAATTTTTAGAATTTG
TCTGTTTTTACTGTGGGTCGGCCGTTGATACTTCATCAAAATAACCATTTCTTTGCTGAGTTCA
GGTGACCGAGGAAGAGCCACACCCTCGAAACAAAACAAAACACACAAACAAAAAAAACCACAGA
ATCATCTTTAACCTAACTTTTTATACGATGTCTCAGTTCCCCGTAACTTTGCACACAAGCTTCT
GTGTTCAGTTGAATTGTAACTGCTTTTTGTATTTGGAGAGAGTGTGACTATTGAACTTGAAACC
TTTTATTCTGGGCGTCTTGGTAGTTTCTGGTGGGATTAAGCGGGTGAGAGGGTGAAGGGAAGGT
GGGGGGTTCTTTCCCTTCAGAATATGAAGTTTCCCCCACAGCCTCCTCTCCAATGCCCTCCCAG
GTGCCAGACCTCAAGTTTTTCCTACAGTGATATACTTTGATTATTCTTACTTCCCCTTTACCCA
TGTTTTAACAGGATTTTAACAAACTGCACTTATTAAGAAATGTGTTTGCCCTGTTTTGTTTTGT
TTTGTTTTGTTTTGTTTTGTTTTCCTTCAATAAATGACATGGCACCTCCTAGCAGGAAGGAAGC
AGGATCAAAACCCTGAA

hide sequence

RefSeq Acc Id:

XM_005336458 ⟹ XP_005336515

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,262,068 - 15,295,231 (+)	NCBI
SpeTri2.0	NW_004936661	3,690,137 - 3,723,398 (+)	NCBI

Sequence:

show sequence

GAGCCCTGGGAGGCCGGGCCGGGCTCGGGGGCCGCCCCGGGGGCCCGGGCCATGGATGTGCGTC
GTCTGAAGGTGAACGAACTTCGCGAGGAGCTGCAGCGCCGCGGCCTGGACACTCGCGGCCTTAA
GGCCGAGCTTGCTGAGCGGCTGCTGGCGGCGTTGGAGGCCGAGGAGCCTGACGACGAGCGGGAG
CTCGAGGCCGACGACGAACCGGGGAGACCCGGACACAACAACGAGGAGATGTCATGGACAATAT
TACCAGGCAGAACCAATTCTACGAGACCCAAGTCATCAAGCAAGAAAATGAGTCGGGCTATGAG
AGGAGACCTCTAGACATGGAGCCACTACAGCAGGCCTACCGGCCAGAAGTGAAGACAGAGATGA
AGCAAGAAGCACCCCCCAGCTTCCTGCCACCCGAAGCTTCTCAACTCAAGCCAGACAGGCAGCA
ATTTCAAAGTCGAAAGAGGCCTTATGAAGAAAACCGGGGACGTGGATATTTCGAGCACCGAGAG
GATAGGAGGGGTCGTTCTCCTCAGCCTCCTGCTGAAGAAGATGAAGATGACTTTGATGATACCC
TTGTTGCCATCGACACATATAACTGCGACCTGCATTTCAAGGTGGCCCGAGACCGGAGTAGTGG
TTATCCACTTACTATTGAGGGCTTTGCATACCTGTGGTCAGGAGCCCGTGCCAGCTATGGGGTC
AGAAGGGGTCGTGTATGTTTCGAGATGAAGATCAATGAGGAAATCTCCGTGAAGCACCTCCCTT
CTACAGAGCCTGACCCCCATGTTGTCCGTATCGGCTGGTCCCTGGACTCTTGCAGCACCCAGCT
AGGCGAAGAGCCTTTCTCCTATGGCTATGGAGGCACAGGGAAGAAGTCCACTAATAGCCGGTTT
GAAAACTATGGAGACAAGTTTGCAGAAAATGATGTGATTGGCTGCTTTGCGGACTTTGAATGTG
GAAATGATGTGGAACTTTCATTTACCAAGAATGGGAAGTGGATGGGCATTGCCTTCCGAATCCA
GAAAGAAGCATTGGGGGGTCAGGCCCTCTACCCTCATGTTCTGGTAAAGAATTGTGCTGTGGAG
TTCAACTTCGGGCAGAGGGCAGAGCCCTACTGTTCTGTCCTCCCGGGATTCACTTTCATCCAGC
ACCTTCCCCTTAGTGAGCGGATCCGGGGCACTGTTGGACCAAAGAGCAAGGCAGAGTGTGAGAT
TCTGATGATGGTGGGCCTGCCCGCTGCTGGCAAGACCACATGGGCCATCAAACATGCAGCCTCC
AATCCTTCCAAGAAGTACAACATCCTGGGTACCAATGCCATTATGGATAAGATGCGGGTAATGG
GCCTGCGCCGGCAGAGGAATTATGCTGGTCGCTGGGACGTCTTGATCCAACAGGCTACCCAGTG
CCTCAACCGTCTCATCCAGATTGCTGCTCGCAAGAAACGCAACTATATTCTAGATCAGACAAAT
GTTTATGGGTCAGCCCAGAGACGAAAAATGAGACCATTTGAAGGCTTCCAACGAAAAGCTATTG
TAATTTGTCCCACTGACGAGGACCTGAAAGACCGAACAATAAAGCGCACCGATGAGGAAGGGAA
GGATGTCCCTGATCATGCGGTCTTAGAAATGAAAGCCAACTTCACATTACCTGATGTCGGGGAC
TTCCTGGATGAAGTTCTGTTCATTGAGCTGCAGCGGGAAGAAGCAGACAAGCTGGTGAGGCAGT
ACAACGAGGAGGGCCGCAAGGCTGGGCCACCCCCTGAAAAGCGCTTTGACAACCGAGGTGGTGG
TGGCTTCCGGGGCCGCGGAGGTGGCGGCGGTTTCCAGCGCTATGACAACAGAGGCCCCCCTGGA
GGCAACCGAGGAGGCTTCCAGAACCGAGGGGGAGGCAGTGGTGGTGGAGGCAACTACCGAGGAG
GTTTCAACCGCAGTGGAGGTGGTGGCTACAACCAGAACCGCTGGGGTAACAACAACCGGGATAA
CAACAACTCCAACAACCGAGGCAGCTATAACCGGGCTCCCCAGCAGCAGCCACCACCACAGCAG
CCGCCACCACCACAACCACCACCACAGCAGCCGCCGCCACCACCCAGCTATAGCCCTGCTCGTA
ACCCACCAGGTGCTGGCAGCTACAACAAGAGCAGCAGCATCCCTGGCTCGAGCGCTAATACCAG
CACCCCTACGGTCAGCAGCTACAGCCCCCCACAGCCGAGTTACAGCCAGCCACCCTACAGCCAG
GGAGGTTATAGCCAGGGCTATACAGCCCCACCACCTCCACCTCCGCCACCACCTGCCTACAACT
ATGGAAGCTACGGTGGCTACAACCCAGCCCCCTATACTCCGCCACCACCGCCCACGGCACAGAC
CTACCCTCAGCCCAGCTATAACCAGTATCAGCAGTATGCCCAGCAGTGGAACCAGTACTATCAG
AACCAGGGCCAGTGGCCGCCATACTATGGGAACTACGACTACGGGAGCTACTCCGGCAGCACAC
AGGGTGGCACAAGCACACAGTAGCCAGTGTGTCTGGAGGCTCCCGGGGCCGCTGCCGGCTTCCT
GCACCAGCGCCTGCCTCGGCCCCTTCTCTGGCCCCTCCTCTACCCCCACCGGGTCCTGTGGTGC
TGGGGATGGGGTCATCCCAGAGCTGCCTCCCTCCAGCCCACTGCCTCTCCTTTGGGGGAGGGGT
CTTCTCCCCCACAGGCCAGGCAATTTTCTCTGGATTCAAACAGGCAACAATGACCTTTTATTTT
GTTTGTCCCCTCCATCTCCCACCTCTTCCTTTTCCTCCTTGCCCCTTTTTGACTGAAAATCCCT
CTTTCCCTTGGTCATCAGTGAGGCCACAGTGACTAAGGGGAAGACCCCTTCCTGTTTGCTCCTC
CCAGCCCTGCTCCAGCCCCTCAGCTTCCCAGACCCTCATGCAGTTGGTTGTAAATTCTTCCAGG
AGCTGTTTTACTGTCTACTTTTCAGGATTAAAAAAAAAAAAAAAAAATCAAAAACTTAAAAAAA
AAAAGTTTAAAAAAGCAAAAGCAAATGTGGAGGGAGGAAGCAGCAACATATTTTTTTGGTAATT
ATGCTTTTTTTTTAATTTTTAGAATTTGTCTGTTTTTACTGTGGGTCGGCCGTTGATACTTCAT
CAAAATAACCATTTCTTTGCTGAGTTCAGGTGACCGAGGAAGAGCCACACCCTCGAAACAAAAC
AAAACACACAAACAAAAAAAACCACAGAATCATCTTTAACCTAACTTTTTATACGATGTCTCAG
TTCCCCGTAACTTTGCACACAAGCTTCTGTGTTCAGTTGAATTGTAACTGCTTTTTGTATTTGG
AGAGAGTGTGACTATTGAACTTGAAACCTTTTATTCTGGGCGTCTTGGTAGTTTCTGGTGGGAT
TAAGCGGGTGAGAGGGTGAAGGGAAGGTGGGGGGTTCTTTCCCTTCAGAATATGAAGTTTCCCC
CACAGCCTCCTCTCCAATGCCCTCCCAGGTGCCAGACCTCAAGTTTTTCCTACAGTGATATACT
TTGATTATTCTTACTTCCCCTTTACCCATGTTTTAACAGGATTTTAACAAACTGCACTTATTAA
GAAATGTGTTTGCCCTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTCCTTCAATAAATG
ACATGGCACCTCCTAGCAGGAAGGAAGCAGGATCAAAA

hide sequence

RefSeq Acc Id:

XM_005336459 ⟹ XP_005336516

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,260,297 - 15,295,231 (+)	NCBI
SpeTri2.0	NW_004936661	3,688,328 - 3,723,405 (+)	NCBI

Sequence:

show sequence

TTTTAGAACAAATCGTTGTGGGGAACTGGGAGGAGAGAGGAAGTCGGACGTGGGCGAGGGGCGG
GGTGTCTGGACTGGAACCTCCGGGCCCACATGTCATGGACAATATTACCAGGCAGAACCAATTC
TACGAGACCCAAGTCATCAAGCAAGAAAATGAGTCGGGCTATGAGAGGAGACCTCTAGACATGG
AGCCACTACAGCAGGCCTACCGGCCAGAAGTGAAGACAGAGATGAAGCAAGAAGCACCCCCCAG
CTTCCTGCCACCCGAAGCTTCTCAACTCAAGCCAGACAGGCAGCAATTTCAAAGTCGAAAGAGG
CCTTATGAAGAAAACCGGGGACGTGGATATTTCGAGCACCGAGAGGATAGGAGGGGTCGTTCTC
CTCAGCCTCCTGCTGAAGAAGATGAAGATGACTTTGATGATACCCTTGTTGCCATCGACACATA
TAACTGCGACCTGCATTTCAAGGTGGCCCGAGACCGGAGTAGTGGTTATCCACTTACTATTGAG
GGCTTTGCATACCTGTGGTCAGGAGCCCGTGCCAGCTATGGGGTCAGAAGGGGTCGTGTATGTT
TCGAGATGAAGATCAATGAGGAAATCTCCGTGAAGCACCTCCCTTCTACAGAGCCTGACCCCCA
TGTTGTCCGTATCGGCTGGTCCCTGGACTCTTGCAGCACCCAGCTAGGCGAAGAGCCTTTCTCC
TATGGCTATGGAGGCACAGGGAAGAAGTCCACTAATAGCCGGTTTGAAAACTATGGAGACAAGT
TTGCAGAAAATGATGTGATTGGCTGCTTTGCGGACTTTGAATGTGGAAATGATGTGGAACTTTC
ATTTACCAAGAATGGGAAGTGGATGGGCATTGCCTTCCGAATCCAGAAAGAAGCATTGGGGGGT
CAGGCCCTCTACCCTCATGTTCTGGTAAAGAATTGTGCTGTGGAGTTCAACTTCGGGCAGAGGG
CAGAGCCCTACTGTTCTGTCCTCCCGGGATTCACTTTCATCCAGCACCTTCCCCTTAGTGAGCG
GATCCGGGGCACTGTTGGACCAAAGAGCAAGGCAGAGTGTGAGATTCTGATGATGGTGGGCCTG
CCCGCTGCTGGCAAGACCACATGGGCCATCAAACATGCAGCCTCCAATCCTTCCAAGAAGTACA
ACATCCTGGGTACCAATGCCATTATGGATAAGATGCGGGTAATGGGCCTGCGCCGGCAGAGGAA
TTATGCTGGTCGCTGGGACGTCTTGATCCAACAGGCTACCCAGTGCCTCAACCGTCTCATCCAG
ATTGCTGCTCGCAAGAAACGCAACTATATTCTAGATCAGACAAATGTTTATGGGTCAGCCCAGA
GACGAAAAATGAGACCATTTGAAGGCTTCCAACGAAAAGCTATTGTAATTTGTCCCACTGACGA
GGACCTGAAAGACCGAACAATAAAGCGCACCGATGAGGAAGGGAAGGATGTCCCTGATCATGCG
GTCTTAGAAATGAAAGCCAACTTCACATTACCTGATGTCGGGGACTTCCTGGATGAAGTTCTGT
TCATTGAGCTGCAGCGGGAAGAAGCAGACAAGCTGGTGAGGCAGTACAACGAGGAGGGCCGCAA
GGCTGGGCCACCCCCTGAAAAGCGCTTTGACAACCGAGGTGGTGGTGGCTTCCGGGGCCGCGGA
GGTGGCGGCGGTTTCCAGCGCTATGACAACAGAGGCCCCCCTGGAGGCAACCGAGGAGGCTTCC
AGAACCGAGGGGGAGGCAGTGGTGGTGGAGGCAACTACCGAGGAGGTTTCAACCGCAGTGGAGG
TGGTGGCTACAACCAGAACCGCTGGGGTAACAACAACCGGGATAACAACAACTCCAACAACCGA
GGCAGCTATAACCGGGCTCCCCAGCAGCAGCCACCACCACAGCAGCCGCCACCACCACAACCAC
CACCACAGCAGCCGCCGCCACCACCCAGCTATAGCCCTGCTCGTAACCCACCAGGTGCTGGCAG
CTACAACAAGAGCAGCAGCATCCCTGGCTCGAGCGCTAATACCAGCACCCCTACGGTCAGCAGC
TACAGCCCCCCACAGCCGAGTTACAGCCAGCCACCCTACAGCCAGGGAGGTTATAGCCAGGGCT
ATACAGCCCCACCACCTCCACCTCCGCCACCACCTGCCTACAACTATGGAAGCTACGGTGGCTA
CAACCCAGCCCCCTATACTCCGCCACCACCGCCCACGGCACAGACCTACCCTCAGCCCAGCTAT
AACCAGTATCAGCAGTATGCCCAGCAGTGGAACCAGTACTATCAGAACCAGGGCCAGTGGCCGC
CATACTATGGGAACTACGACTACGGGAGCTACTCCGGCAGCACACAGGGTGGCACAAGCACACA
GTAGCCAGTGTGTCTGGAGGCTCCCGGGGCCGCTGCCGGCTTCCTGCACCAGCGCCTGCCTCGG
CCCCTTCTCTGGCCCCTCCTCTACCCCCACCGGGTCCTGTGGTGCTGGGGATGGGGTCATCCCA
GAGCTGCCTCCCTCCAGCCCACTGCCTCTCCTTTGGGGGAGGGGTCTTCTCCCCCACAGGCCAG
GCAATTTTCTCTGGATTCAAACAGGCAACAATGACCTTTTATTTTGTTTGTCCCCTCCATCTCC
CACCTCTTCCTTTTCCTCCTTGCCCCTTTTTGACTGAAAATCCCTCTTTCCCTTGGTCATCAGT
GAGGCCACAGTGACTAAGGGGAAGACCCCTTCCTGTTTGCTCCTCCCAGCCCTGCTCCAGCCCC
TCAGCTTCCCAGACCCTCATGCAGTTGGTTGTAAATTCTTCCAGGAGCTGTTTTACTGTCTACT
TTTCAGGATTAAAAAAAAAAAAAAAAAATCAAAAACTTAAAAAAAAAAAGTTTAAAAAAGCAAA
AGCAAATGTGGAGGGAGGAAGCAGCAACATATTTTTTTGGTAATTATGCTTTTTTTTTAATTTT
TAGAATTTGTCTGTTTTTACTGTGGGTCGGCCGTTGATACTTCATCAAAATAACCATTTCTTTG
CTGAGTTCAGGTGACCGAGGAAGAGCCACACCCTCGAAACAAAACAAAACACACAAACAAAAAA
AACCACAGAATCATCTTTAACCTAACTTTTTATACGATGTCTCAGTTCCCCGTAACTTTGCACA
CAAGCTTCTGTGTTCAGTTGAATTGTAACTGCTTTTTGTATTTGGAGAGAGTGTGACTATTGAA
CTTGAAACCTTTTATTCTGGGCGTCTTGGTAGTTTCTGGTGGGATTAAGCGGGTGAGAGGGTGA
AGGGAAGGTGGGGGGTTCTTTCCCTTCAGAATATGAAGTTTCCCCCACAGCCTCCTCTCCAATG
CCCTCCCAGGTGCCAGACCTCAAGTTTTTCCTACAGTGATATACTTTGATTATTCTTACTTCCC
CTTTACCCATGTTTTAACAGGATTTTAACAAACTGCACTTATTAAGAAATGTGTTTGCCCTGTT
TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTCCTTCAATAAATGACATGGCACCTCCTAGCAG
GAAGGAAGCAGGATCAAAACCCTGAA

hide sequence

RefSeq Acc Id:

XM_040279305 ⟹ XP_040135239

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,262,074 - 15,294,665 (+)	NCBI

RefSeq Acc Id:

XM_040279306 ⟹ XP_040135240

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,262,074 - 15,294,665 (+)	NCBI

RefSeq Acc Id:

XM_040279307 ⟹ XP_040135241

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,262,168 - 15,294,665 (+)	NCBI

RefSeq Acc Id:

XM_040279308 ⟹ XP_040135242

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,260,235 - 15,294,665 (+)	NCBI

RefSeq Acc Id:

XM_040279309 ⟹ XP_040135243

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,262,168 - 15,294,665 (+)	NCBI

RefSeq Acc Id:

XM_040279310 ⟹ XP_040135244

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	15,260,236 - 15,294,665 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005336512	(Get FASTA)	NCBI Sequence Viewer
	XP_005336513	(Get FASTA)	NCBI Sequence Viewer
	XP_005336515	(Get FASTA)	NCBI Sequence Viewer
	XP_005336516	(Get FASTA)	NCBI Sequence Viewer
	XP_040135239	(Get FASTA)	NCBI Sequence Viewer
	XP_040135240	(Get FASTA)	NCBI Sequence Viewer
	XP_040135241	(Get FASTA)	NCBI Sequence Viewer
	XP_040135242	(Get FASTA)	NCBI Sequence Viewer
	XP_040135243	(Get FASTA)	NCBI Sequence Viewer
	XP_040135244	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001439.3
GenBank Protein	KAG3256098	(Get FASTA)	NCBI Sequence Viewer
	KAG3256099	(Get FASTA)	NCBI Sequence Viewer
	KAG3256100	(Get FASTA)	NCBI Sequence Viewer
	KAG3256101	(Get FASTA)	NCBI Sequence Viewer
	KAG3256102	(Get FASTA)	NCBI Sequence Viewer
	KAG3256103	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005336516 ⟸ XM_005336459

- Peptide Label:

isoform X7

- Sequence:

show sequence

MDNITRQNQFYETQVIKQENESGYERRPLDMEPLQQAYRPEVKTEMKQEAPPSFLPPEASQLKP
DRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARD
RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSC
STQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIA
FRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKA
ECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQ
ATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTD
EEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRFDN
RGGGGFRGRGGGGGFQRYDNRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYNQNRWGNN
NRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGAGSYNKSSSIPGSS
ANTSTPTVSSYSPPQPSYSQPPYSQGGYSQGYTAPPPPPPPPPAYNYGSYGGYNPAPYTPPPPP
TAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSGSTQGGTSTQ

hide sequence

RefSeq Acc Id:

XP_005336515 ⟸ XM_005336458

- Peptide Label:

isoform X7

- Sequence:

show sequence

MDNITRQNQFYETQVIKQENESGYERRPLDMEPLQQAYRPEVKTEMKQEAPPSFLPPEASQLKP
DRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARD
RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSC
STQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIA
FRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKA
ECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQ
ATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTD
EEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRFDN
RGGGGFRGRGGGGGFQRYDNRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYNQNRWGNN
NRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGAGSYNKSSSIPGSS
ANTSTPTVSSYSPPQPSYSQPPYSQGGYSQGYTAPPPPPPPPPAYNYGSYGGYNPAPYTPPPPP
TAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSGSTQGGTSTQ

hide sequence

RefSeq Acc Id:

XP_005336512 ⟸ XM_005336455

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDVRRLKVNELREELQRRGLDTRGLKAELAERLLAALEAEEPDDERELEADDEPGRPGHNNEEV
ETEGGSELEGTAQPPPPGLQPHPEPGGYPGPDGHYVMDNITRQNQFYETQVIKQENESGYERRP
LDMEPLQQAYRPVEVKTEMKQEAPPSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDR
RGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRR
GRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFEN
YGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFN
FGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNP
SKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVY
GSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFL
DEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYDNRGPPGGN
RGGFQNRGGGSGGGGNYRGGFNRSGGGGYNQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPP
PPQPPPQQPPPPPSYSPARNPPGAGSYNKSSSIPGSSANTSTPTVSSYSPPQPSYSQPPYSQGG
YSQGYTAPPPPPPPPPAYNYGSYGGYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQ
GQWPPYYGNYDYGSYSGSTQGGTSTQ

hide sequence

RefSeq Acc Id:	XP_005336513 ⟸ XM_005336456
- Peptide Label:	isoform X4
- UniProtKB:	I3LYW6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVRRLKVNELREELQRRGLDTRGLKAELAERLLAALEAEEPDDERELEADDEPGRPGHNNEEV ETEGGSELEGTAQPPPPGLQPHPEPGGYPGPDGHYVMDNITRQNQFYETQVIKQENESGYERRP LDMEPLQQAYRPEVKTEMKQEAPPSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRR GRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRG RVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENY GDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNF GQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPS KKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYG SAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLD EVLFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYDNRGPPGGNR GGFQNRGGGSGGGGNYRGGFNRSGGGGYNQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPP PQPPPQQPPPPPSYSPARNPPGAGSYNKSSSIPGSSANTSTPTVSSYSPPQPSYSQPPYSQGGY SQGYTAPPPPPPPPPAYNYGSYGGYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQG QWPPYYGNYDYGSYSGSTQGGTSTQ hide sequence

RefSeq Acc Id:	XP_040135242 ⟸ XM_040279308
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040135244 ⟸ XM_040279310
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_040135239 ⟸ XM_040279305
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040135240 ⟸ XM_040279306
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040135241 ⟸ XM_040279307
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040135243 ⟸ XM_040279309
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSSTOP00000001439 ⟸ ENSSTOT00000001608

Protein Domains

B30.2/SPRY SAP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001605	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000001608.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.720.30	UniProtKB/TrEMBL
	2.60.120.920	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	B30.2/SPRY	UniProtKB/TrEMBL
	B30.2/SPRY_sf	UniProtKB/TrEMBL
	ConA-like_dom_sf	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SAP_dom	UniProtKB/TrEMBL
	SAP_dom_sf	UniProtKB/TrEMBL
	SPRY_dom	UniProtKB/TrEMBL
	SPRY_hnRNP_U	UniProtKB/TrEMBL
NCBI Gene	Hnrnpul1	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER	UniProtKB/TrEMBL
	PTHR12381:SF41	UniProtKB/TrEMBL
Pfam	AAA_33	UniProtKB/TrEMBL
	SAP	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
PRINTS	PRICHEXTENSN	UniProtKB/TrEMBL
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	SAP	UniProtKB/TrEMBL
SMART	SAP	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49899	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
	SSF68906	UniProtKB/TrEMBL
UniProt	I3LYW6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar