HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U like 1) - Rat Genome Database

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Gene: HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U like 1) Chlorocebus sabaeus
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Symbol: HNRNPUL1
Name: heterogeneous nuclear ribonucleoprotein U like 1
RGD ID: 18411704
Description: ENCODES a protein that exhibits enzyme binding (inferred); RNA binding (inferred); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heterogeneous nuclear ribonucleoprotein U-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,580,856 - 35,628,263 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl635,582,849 - 35,627,195 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607313,816,041 - 13,863,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)
synapse  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
HNRNPUL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,580,856 - 35,628,263 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl635,582,849 - 35,627,195 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607313,816,041 - 13,863,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HNRNPUL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,262,557 - 41,307,787 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,262,496 - 41,307,787 (+)EnsemblGRCh38hg38GRCh38
GRCh371941,768,462 - 41,813,692 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,460,264 - 46,505,438 (+)NCBINCBI36Build 36hg18NCBI36
Build 341946,460,263 - 46,505,438NCBI
Celera1938,568,542 - 38,613,960 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,200,850 - 38,246,269 (+)NCBIHuRef
CHM1_11941,768,089 - 41,813,503 (+)NCBICHM1_1
T2T-CHM13v2.01944,083,416 - 44,128,645 (+)NCBIT2T-CHM13v2.0
Hnrnpul1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39725,420,586 - 25,455,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl725,420,590 - 25,454,182 (-)EnsemblGRCm39 Ensembl
GRCm38725,721,161 - 25,756,268 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,721,165 - 25,754,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv37726,507,055 - 26,539,739 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36725,430,794 - 25,471,817 (-)NCBIMGSCv36mm8
Celera720,330,948 - 20,363,632 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map714.0NCBI
Hnrnpul1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,356,182 - 90,391,923 (-)NCBIGRCr8
mRatBN7.2181,228,404 - 81,264,121 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,228,404 - 81,262,592 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,620,591 - 86,654,781 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0195,172,109 - 95,206,035 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,376,388 - 88,410,580 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,512,745 - 82,548,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,512,745 - 82,546,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,774,021 - 83,808,198 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,926,575 - 80,960,767 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1181,004,696 - 81,038,905 (-)NCBI
Celera175,667,871 - 75,702,062 (-)NCBICelera
Cytogenetic Map1q21NCBI
Hnrnpul1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555220,450 - 257,631 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955555219,185 - 254,979 (+)NCBIChiLan1.0ChiLan1.0
HNRNPUL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,472,533 - 47,517,768 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,340,694 - 49,386,543 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,255,183 - 38,300,877 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,762,459 - 46,808,377 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,762,459 - 46,808,374 (+)Ensemblpanpan1.1panPan2
HNRNPUL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,661,955 - 112,699,112 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,662,429 - 112,697,403 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,065,666 - 112,102,719 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,259,749 - 113,296,815 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,260,032 - 113,295,289 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,820,873 - 112,857,926 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,453,227 - 112,490,274 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,446,564 - 113,483,636 (-)NCBIUU_Cfam_GSD_1.0
Hnrnpul1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,260,235 - 15,295,231 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366613,690,137 - 3,723,391 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366613,688,328 - 3,723,405 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPUL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,280,211 - 49,315,669 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,280,296 - 49,315,967 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,075,284 - 45,111,110 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Hnrnpul1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907109,093 - 143,603 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907107,426 - 144,300 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 18 60
Low 2
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000001572   ⟹   ENSCSAP00000014508
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl635,582,849 - 35,627,195 (+)Ensembl
RefSeq Acc Id: XM_007996888   ⟹   XP_007995079
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,582,693 - 35,628,263 (+)NCBI
Vero_WHO_p1.0NW_02366607313,817,852 - 13,863,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007996889   ⟹   XP_007995080
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,582,697 - 35,628,263 (+)NCBI
Vero_WHO_p1.0NW_02366607313,818,196 - 13,863,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007996890   ⟹   XP_007995081
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,582,949 - 35,628,263 (+)NCBI
Vero_WHO_p1.0NW_02366607313,818,050 - 13,863,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007996891   ⟹   XP_007995082
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,583,370 - 35,628,263 (+)NCBI
Vero_WHO_p1.0NW_02366607313,818,544 - 13,863,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007996892   ⟹   XP_007995083
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1635,580,856 - 35,628,263 (+)NCBI
Vero_WHO_p1.0NW_02366607313,816,041 - 13,863,308 (+)NCBI
Sequence:
RefSeq Acc Id: XP_007995083   ⟸   XM_007996892
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007995079   ⟸   XM_007996888
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007995080   ⟸   XM_007996889
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S0W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007995081   ⟸   XM_007996890
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007995082   ⟸   XM_007996891
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCSAP00000014508   ⟸   ENSCSAT00000001572


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003544 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001572.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.30 UniProtKB/TrEMBL
  2.60.120.920 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SAP_dom UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  SPRY_hnRNP_U UniProtKB/TrEMBL
NCBI Gene HNRNPUL1 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER UniProtKB/TrEMBL
  PTHR12381:SF41 UniProtKB/TrEMBL
Pfam AAA_33 UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
SMART SAP UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF68906 UniProtKB/TrEMBL
UniProt A0A0D9S0W9 ENTREZGENE, UniProtKB/TrEMBL