HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U like 1) - Rat Genome Database

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Gene: HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U like 1) Pan paniscus
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Symbol: HNRNPUL1
Name: heterogeneous nuclear ribonucleoprotein U like 1
RGD ID: 11682814
Description: ENCODES a protein that exhibits enzyme binding (inferred); RNA binding (inferred); INVOLVED IN poly(A)+ mRNA export from nucleus (inferred); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heterogeneous nuclear ribonucleoprotein U-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,472,533 - 47,517,768 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,340,694 - 49,386,543 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,255,183 - 38,300,877 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,762,459 - 46,808,377 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,762,459 - 46,808,374 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)
synapse  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HNRNPUL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,472,533 - 47,517,768 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,340,694 - 49,386,543 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,255,183 - 38,300,877 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,762,459 - 46,808,377 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,762,459 - 46,808,374 (+)Ensemblpanpan1.1panPan2
HNRNPUL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,262,557 - 41,307,787 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,262,496 - 41,307,787 (+)EnsemblGRCh38hg38GRCh38
GRCh371941,768,462 - 41,813,692 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,460,264 - 46,505,438 (+)NCBINCBI36Build 36hg18NCBI36
Build 341946,460,263 - 46,505,438NCBI
Celera1938,568,542 - 38,613,960 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,200,850 - 38,246,269 (+)NCBIHuRef
CHM1_11941,768,089 - 41,813,503 (+)NCBICHM1_1
T2T-CHM13v2.01944,083,416 - 44,128,645 (+)NCBIT2T-CHM13v2.0
Hnrnpul1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39725,420,586 - 25,455,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl725,420,590 - 25,454,182 (-)EnsemblGRCm39 Ensembl
GRCm38725,721,161 - 25,756,268 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,721,165 - 25,754,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv37726,507,055 - 26,539,739 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36725,430,794 - 25,471,817 (-)NCBIMGSCv36mm8
Celera720,330,948 - 20,363,632 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map714.0NCBI
Hnrnpul1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,356,182 - 90,391,923 (-)NCBIGRCr8
mRatBN7.2181,228,404 - 81,264,121 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,228,404 - 81,262,592 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,620,591 - 86,654,781 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0195,172,109 - 95,206,035 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,376,388 - 88,410,580 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,512,745 - 82,548,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,512,745 - 82,546,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,774,021 - 83,808,198 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,926,575 - 80,960,767 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1181,004,696 - 81,038,905 (-)NCBI
Celera175,667,871 - 75,702,062 (-)NCBICelera
Cytogenetic Map1q21NCBI
Hnrnpul1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555220,450 - 257,631 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955555219,185 - 254,979 (+)NCBIChiLan1.0ChiLan1.0
HNRNPUL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,661,955 - 112,699,112 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,662,429 - 112,697,403 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,065,666 - 112,102,719 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,259,749 - 113,296,815 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,260,032 - 113,295,289 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,820,873 - 112,857,926 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,453,227 - 112,490,274 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,446,564 - 113,483,636 (-)NCBIUU_Cfam_GSD_1.0
Hnrnpul1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,260,235 - 15,295,231 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366613,690,137 - 3,723,391 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366613,688,328 - 3,723,405 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPUL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,280,211 - 49,315,669 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,280,296 - 49,315,967 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,075,284 - 45,111,110 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPUL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,580,856 - 35,628,263 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl635,582,849 - 35,627,195 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607313,816,041 - 13,863,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpul1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907109,093 - 143,603 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907107,426 - 144,300 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000053161   ⟹   ENSPPAP00000030301
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1946,762,459 - 46,808,374 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000053170   ⟹   ENSPPAP00000030311
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1946,764,481 - 46,807,270 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000053174   ⟹   ENSPPAP00000030314
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1946,764,481 - 46,806,555 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000053177   ⟹   ENSPPAP00000030316
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1946,764,481 - 46,806,555 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000053183   ⟹   ENSPPAP00000030323
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1946,765,264 - 46,808,374 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000053189   ⟹   ENSPPAP00000030329
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1946,765,727 - 46,807,270 (+)Ensembl
RefSeq Acc Id: XM_003812455   ⟹   XP_003812503
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,472,533 - 47,517,768 (+)NCBI
NHGRI_mPanPan11949,340,694 - 49,386,543 (+)NCBI
Mhudiblu_PPA_v01938,255,219 - 38,300,877 (+)NCBI
PanPan1.11946,762,459 - 46,808,377 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008964868   ⟹   XP_008963116
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,472,533 - 47,517,768 (+)NCBI
NHGRI_mPanPan11949,340,755 - 49,386,543 (+)NCBI
Mhudiblu_PPA_v01938,255,183 - 38,300,633 (+)NCBI
PanPan1.11946,762,459 - 46,808,088 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008964869   ⟹   XP_008963117
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,475,163 - 47,517,768 (+)NCBI
NHGRI_mPanPan11949,343,427 - 49,386,543 (+)NCBI
Mhudiblu_PPA_v01938,257,760 - 38,300,877 (+)NCBI
PanPan1.11946,765,264 - 46,807,270 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034944600   ⟹   XP_034800491
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,473,293 - 47,517,768 (+)NCBI
NHGRI_mPanPan11949,341,548 - 49,386,543 (+)NCBI
Mhudiblu_PPA_v01938,257,041 - 38,300,877 (+)NCBI
RefSeq Acc Id: XM_034944601   ⟹   XP_034800492
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,473,293 - 47,517,768 (+)NCBI
NHGRI_mPanPan11949,341,548 - 49,386,543 (+)NCBI
Mhudiblu_PPA_v01938,257,033 - 38,300,877 (+)NCBI
RefSeq Acc Id: XM_034944603   ⟹   XP_034800494
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,475,237 - 47,517,768 (+)NCBI
NHGRI_mPanPan11949,343,596 - 49,386,543 (+)NCBI
Mhudiblu_PPA_v01938,257,933 - 38,300,877 (+)NCBI
RefSeq Acc Id: XM_034944604   ⟹   XP_034800495
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,475,062 - 47,517,768 (+)NCBI
NHGRI_mPanPan11949,343,445 - 49,386,543 (+)NCBI
Mhudiblu_PPA_v01938,257,782 - 38,300,877 (+)NCBI
RefSeq Acc Id: XM_034944605   ⟹   XP_034800496
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,474,794 - 47,517,768 (+)NCBI
NHGRI_mPanPan11949,343,049 - 49,386,543 (+)NCBI
Mhudiblu_PPA_v01938,257,250 - 38,300,877 (+)NCBI
RefSeq Acc Id: XM_063600325   ⟹   XP_063456395
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,473,293 - 47,517,768 (+)NCBI
RefSeq Acc Id: XM_063600326   ⟹   XP_063456396
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,475,163 - 47,517,768 (+)NCBI
RefSeq Acc Id: XM_063600327   ⟹   XP_063456397
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22047,475,220 - 47,517,768 (+)NCBI
RefSeq Acc Id: XP_003812503   ⟸   XM_003812455
- Peptide Label: isoform X7
- UniProtKB: A0A2R9BUQ8 (UniProtKB/TrEMBL),   A0A2R9BUR8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008963116   ⟸   XM_008964868
- Peptide Label: isoform X6
- UniProtKB: A0A2R9BLM5 (UniProtKB/TrEMBL),   A0A2R9BUR8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008963117   ⟸   XM_008964869
- Peptide Label: isoform X6
- UniProtKB: A0A2R9BLM5 (UniProtKB/TrEMBL),   A0A2R9BUR8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034800492   ⟸   XM_034944601
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BUR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800491   ⟸   XM_034944600
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BUR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800496   ⟸   XM_034944605
- Peptide Label: isoform X6
- UniProtKB: A0A2R9BLM5 (UniProtKB/TrEMBL),   A0A2R9BUR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800495   ⟸   XM_034944604
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034800494   ⟸   XM_034944603
- Peptide Label: isoform X4
RefSeq Acc Id: ENSPPAP00000030301   ⟸   ENSPPAT00000053161
RefSeq Acc Id: ENSPPAP00000030314   ⟸   ENSPPAT00000053174
RefSeq Acc Id: ENSPPAP00000030316   ⟸   ENSPPAT00000053177
RefSeq Acc Id: ENSPPAP00000030311   ⟸   ENSPPAT00000053170
RefSeq Acc Id: ENSPPAP00000030323   ⟸   ENSPPAT00000053183
RefSeq Acc Id: ENSPPAP00000030329   ⟸   ENSPPAT00000053189
RefSeq Acc Id: XP_063456395   ⟸   XM_063600325
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063456396   ⟸   XM_063600326
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063456397   ⟸   XM_063600327
- Peptide Label: isoform X8
Protein Domains
B30.2/SPRY   SAP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000053161.1 UniProtKB/TrEMBL
  ENSPPAT00000053170.1 UniProtKB/TrEMBL
  ENSPPAT00000053174.1 UniProtKB/TrEMBL
  ENSPPAT00000053177.1 UniProtKB/TrEMBL
  ENSPPAT00000053183.1 UniProtKB/TrEMBL
  ENSPPAT00000053189.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.30 UniProtKB/TrEMBL
  2.60.120.920 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SAP_dom UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  SPRY_hnRNP_U UniProtKB/TrEMBL
KEGG Report pps:100979786 UniProtKB/TrEMBL
NCBI Gene HNRNPUL1 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER UniProtKB/TrEMBL
  PTHR12381:SF41 UniProtKB/TrEMBL
  SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN UniProtKB/TrEMBL
  SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN UniProtKB/TrEMBL
Pfam AAA_33 UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
SMART SAP UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF68906 UniProtKB/TrEMBL
UniProt A0A2R9BKV6_PANPA UniProtKB/TrEMBL
  A0A2R9BKW7_PANPA UniProtKB/TrEMBL
  A0A2R9BLM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BUQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BUR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BUS2_PANPA UniProtKB/TrEMBL