Pcmtd1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Pcmtd1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1) Rattus norvegicus
Analyze
Symbol: Pcmtd1
Name: protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
RGD ID: 1586096
Description: Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in protein ubiquitination. Predicted to be located in membrane. Predicted to be part of Cul5-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human PCMTD1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical LOC366300; LOC312924; LOC366300; protein-L-isoaspartate O-methyltransferase domain-containing protein 1; RGD1307986; similar to RIKEN cDNA 5330414D10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8517,071,629 - 17,143,803 (-)NCBIGRCr8
mRatBN7.2512,284,711 - 12,355,680 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl512,284,711 - 12,354,899 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx514,452,490 - 14,492,191 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0516,095,455 - 16,135,072 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0515,787,182 - 15,826,884 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0512,132,657 - 12,204,376 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl512,132,657 - 12,199,283 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0516,912,203 - 16,951,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4512,362,759 - 12,401,359 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1512,362,881 - 12,428,586 (-)NCBI
Celera511,707,012 - 11,748,355 (-)NCBICelera
Cytogenetic Map5q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clorgyline  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cyproconazole  (ISO)
D-glucose  (ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
erythromycin estolate  (EXP)
ethyl methanesulfonate  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glucose  (ISO)
L-methionine  (ISO)
methidathion  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
propiconazole  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Pcmtd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8517,071,629 - 17,143,803 (-)NCBIGRCr8
mRatBN7.2512,284,711 - 12,355,680 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl512,284,711 - 12,354,899 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx514,452,490 - 14,492,191 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0516,095,455 - 16,135,072 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0515,787,182 - 15,826,884 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0512,132,657 - 12,204,376 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl512,132,657 - 12,199,283 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0516,912,203 - 16,951,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4512,362,759 - 12,401,359 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1512,362,881 - 12,428,586 (-)NCBI
Celera511,707,012 - 11,748,355 (-)NCBICelera
Cytogenetic Map5q11NCBI
PCMTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38851,817,575 - 51,899,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl851,817,575 - 51,899,186 (-)EnsemblGRCh38hg38GRCh38
GRCh37852,730,135 - 52,811,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36852,892,700 - 52,936,350 (-)NCBINCBI36Build 36hg18NCBI36
Celera848,720,804 - 48,802,274 (-)NCBICelera
Cytogenetic Map8q11.23NCBI
HuRef848,198,632 - 48,279,855 (-)NCBIHuRef
CHM1_1852,782,589 - 52,863,825 (-)NCBICHM1_1
T2T-CHM13v2.0852,193,558 - 52,274,823 (-)NCBIT2T-CHM13v2.0
Pcmtd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3917,157,301 - 7,243,852 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl17,159,144 - 7,243,852 (+)EnsemblGRCm39 Ensembl
GRCm3817,087,077 - 7,173,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl17,088,920 - 7,173,628 (+)EnsemblGRCm38mm10GRCm38
MGSCv3717,079,001 - 7,163,709 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3617,110,132 - 7,162,676 (+)NCBIMGSCv36mm8
Celera17,069,105 - 7,153,740 (+)NCBICelera
Cytogenetic Map1A1NCBI
cM Map12.08NCBI
Pcmtd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545411,445,182 - 11,481,893 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545411,445,684 - 11,481,076 (-)NCBIChiLan1.0ChiLan1.0
PCMTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2767,449,110 - 67,530,059 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1843,174,316 - 43,255,094 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0848,236,596 - 48,318,715 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1845,621,138 - 45,702,089 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl845,621,138 - 45,702,014 (-)Ensemblpanpan1.1panPan2
PCMTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1293,711,216 - 3,778,654 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl293,713,822 - 3,778,762 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha294,153,541 - 4,221,760 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0293,781,141 - 3,848,610 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl293,781,144 - 3,849,086 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1293,710,245 - 3,778,422 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0293,934,922 - 4,003,187 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0294,009,932 - 4,078,216 (-)NCBIUU_Cfam_GSD_1.0
Pcmtd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530375,788,295 - 75,863,063 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936590978,048 - 1,053,165 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936590978,094 - 1,052,858 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCMTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl478,098,999 - 78,162,963 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1478,099,021 - 78,162,975 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2485,367,431 - 85,391,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCMTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1847,928,290 - 48,009,078 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl847,928,113 - 47,970,860 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603994,025,992 - 94,106,795 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcmtd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247353,582,935 - 3,679,424 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247353,582,967 - 3,679,437 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcmtd1
491 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:84
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000007769, ENSRNOT00000061903
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5818750118616199Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat

Markers in Region
D5Rat186  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2512,373,955 - 12,374,084 (+)MAPPERmRatBN7.2
Rnor_6.0512,222,994 - 12,223,122NCBIRnor6.0
Rnor_5.0517,001,813 - 17,001,941UniSTSRnor5.0
RGSC_v3.4512,452,222 - 12,452,350UniSTSRGSC3.4
RGSC_v3.4512,452,221 - 12,452,350RGDRGSC3.4
RGSC_v3.1512,452,222 - 12,452,350RGD
Celera511,798,084 - 11,798,212UniSTS
RH 3.4 Map559.8UniSTS
RH 3.4 Map559.8RGD
RH 2.0 Map550.8RGD
Cytogenetic Map5q12UniSTS
RH130059  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2512,284,865 - 12,285,064 (+)MAPPERmRatBN7.2
Rnor_6.0512,132,812 - 12,133,010NCBIRnor6.0
Rnor_5.0516,912,358 - 16,912,556UniSTSRnor5.0
RGSC_v3.4512,360,639 - 12,360,837UniSTSRGSC3.4
Celera511,707,167 - 11,707,365UniSTS
Cytogenetic Map5q12UniSTS
RH143644  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2512,354,852 - 12,355,049 (+)MAPPERmRatBN7.2
Rnor_6.0512,203,612 - 12,203,808NCBIRnor6.0
Rnor_5.0516,982,431 - 16,982,627UniSTSRnor5.0
RGSC_v3.4512,432,616 - 12,432,812UniSTSRGSC3.4
Celera511,778,981 - 11,779,177UniSTS
RH 3.4 Map558.2UniSTS
Cytogenetic Map5q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000007769   ⟹   ENSRNOP00000007769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl512,135,250 - 12,199,283 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000061903   ⟹   ENSRNOP00000058618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl512,284,735 - 12,354,654 (-)Ensembl
Rnor_6.0 Ensembl512,132,657 - 12,172,009 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104289   ⟹   ENSRNOP00000076886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl512,284,711 - 12,354,899 (-)Ensembl
RefSeq Acc Id: NM_001257345   ⟹   NP_001244274
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8517,071,629 - 17,110,957 (-)NCBI
mRatBN7.2512,284,711 - 12,324,040 (-)NCBI
Rnor_6.0512,132,657 - 12,172,009 (-)NCBI
Rnor_5.0516,912,203 - 16,951,282 (-)NCBI
Celera511,707,012 - 11,748,355 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763515   ⟹   XP_008761737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8517,071,629 - 17,096,074 (-)NCBI
mRatBN7.2512,284,711 - 12,309,203 (-)NCBI
Rnor_6.0512,132,657 - 12,158,290 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593529   ⟹   XP_017449018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8517,071,629 - 17,143,803 (-)NCBI
mRatBN7.2512,284,711 - 12,354,838 (-)NCBI
Rnor_6.0512,132,657 - 12,204,376 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110457   ⟹   XP_038966385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8517,071,629 - 17,141,508 (-)NCBI
mRatBN7.2512,284,711 - 12,354,497 (-)NCBI
RefSeq Acc Id: XM_039110458   ⟹   XP_038966386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8517,071,629 - 17,143,803 (-)NCBI
mRatBN7.2512,284,711 - 12,355,658 (-)NCBI
RefSeq Acc Id: XM_039110459   ⟹   XP_038966387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8517,071,629 - 17,143,803 (-)NCBI
mRatBN7.2512,284,711 - 12,355,660 (-)NCBI
RefSeq Acc Id: NP_001244274   ⟸   NM_001257345
- UniProtKB: D4A629 (UniProtKB/TrEMBL),   D3ZPI9 (UniProtKB/TrEMBL),   A6JFH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761737   ⟸   XM_008763515
- Peptide Label: isoform X2
- UniProtKB: A6JFH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449018   ⟸   XM_017593529
- Peptide Label: isoform X2
- UniProtKB: A6JFH5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007769   ⟸   ENSRNOT00000007769
Ensembl Acc Id: ENSRNOP00000058618   ⟸   ENSRNOT00000061903
RefSeq Acc Id: XP_038966387   ⟸   XM_039110459
- Peptide Label: isoform X2
- UniProtKB: A6JFH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966386   ⟸   XM_039110458
- Peptide Label: isoform X2
- UniProtKB: A6JFH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966385   ⟸   XM_039110457
- Peptide Label: isoform X1
- UniProtKB: D3ZPI9 (UniProtKB/TrEMBL),   D4A629 (UniProtKB/TrEMBL),   A6JFH4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000076886   ⟸   ENSRNOT00000104289

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A629-F1-model_v2 AlphaFold D4A629 1-357 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1586096 AgrOrtholog
BioCyc Gene G2FUF-42180 BioCyc
Ensembl Genes ENSRNOG00000005730 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061903.3 UniProtKB/TrEMBL
  ENSRNOT00000104289.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro PCMT UniProtKB/TrEMBL
  SAM-dependent_MTases-like UniProtKB/TrEMBL
KEGG Report rno:366300 UniProtKB/TrEMBL
NCBI Gene 366300 ENTREZGENE
PANTHER PCMT UniProtKB/TrEMBL
  PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam PCMT UniProtKB/TrEMBL
PhenoGen Pcmtd1 PhenoGen
RatGTEx ENSRNOG00000005730 RatGTEx
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A8I5YBY9_RAT UniProtKB/TrEMBL
  A6JFH4 ENTREZGENE, UniProtKB/TrEMBL
  A6JFH5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPI9 ENTREZGENE
  D4A629 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D3ZPI9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-18 Pcmtd1  protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1  LOC366300  hypothetical LOC366300  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-10-28 LOC366300  hypothetical LOC366300  RGD1307986  similar to RIKEN cDNA 5330414D10  Data merged from RGD:1307986 737654 APPROVED
2008-04-30 RGD1307986  similar to RIKEN cDNA 5330414D10   RGD1307986_predicted  similar to RIKEN cDNA 5330414D10 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC366300  hypothetical LOC366300      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1307986_predicted  similar to RIKEN cDNA 5330414D10 (predicted)  LOC312924_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC312924_predicted  similar to RIKEN cDNA 5330414D10 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL