Pcmtd1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1) - Rat Genome Database

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Gene: Pcmtd1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1) Mus musculus
Analyze
Symbol: Pcmtd1
Name: protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
RGD ID: 1317493
MGI Page MGI
Description: Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity and ubiquitin ligase-substrate adaptor activity. Predicted to be involved in protein ubiquitination. Predicted to be located in membrane. Predicted to be part of Cul5-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Is expressed in several structures, including foregut; nervous system; neural retina; submandibular gland primordium; and tooth. Orthologous to human PCMTD1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 8430411F12Rik; A030012M09Rik; MGC117877; protein-L-isoaspartate O-methyltransferase domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15403   Gm6031  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3917,157,301 - 7,243,852 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl17,159,144 - 7,243,852 (+)EnsemblGRCm39 Ensembl
GRCm3817,087,077 - 7,173,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl17,088,920 - 7,173,628 (+)EnsemblGRCm38mm10GRCm38
MGSCv3717,079,001 - 7,163,709 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3617,110,132 - 7,162,676 (+)NCBIMGSCv36mm8
Celera17,069,105 - 7,153,740 (+)NCBICelera
Cytogenetic Map1A1NCBI
cM Map12.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
clorgyline  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (EXP,ISO)
cyproconazole  (EXP)
D-glucose  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
erythromycin estolate  (ISO)
ethyl methanesulfonate  (ISO)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glucose  (EXP)
L-methionine  (EXP)
methidathion  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
poly(I:C)  (ISO)
propiconazole  (EXP)
SB 431542  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
succimer  (EXP)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8288233   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16919269   PMID:18799693   PMID:21267068   PMID:21565611   PMID:21873635   PMID:28190767   PMID:28378742   PMID:29459677   PMID:34157123  


Genomics

Comparative Map Data
Pcmtd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3917,157,301 - 7,243,852 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl17,159,144 - 7,243,852 (+)EnsemblGRCm39 Ensembl
GRCm3817,087,077 - 7,173,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl17,088,920 - 7,173,628 (+)EnsemblGRCm38mm10GRCm38
MGSCv3717,079,001 - 7,163,709 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3617,110,132 - 7,162,676 (+)NCBIMGSCv36mm8
Celera17,069,105 - 7,153,740 (+)NCBICelera
Cytogenetic Map1A1NCBI
cM Map12.08NCBI
PCMTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38851,817,575 - 51,899,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl851,817,575 - 51,899,186 (-)EnsemblGRCh38hg38GRCh38
GRCh37852,730,135 - 52,811,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36852,892,700 - 52,936,350 (-)NCBINCBI36Build 36hg18NCBI36
Celera848,720,804 - 48,802,274 (-)NCBICelera
Cytogenetic Map8q11.23NCBI
HuRef848,198,632 - 48,279,855 (-)NCBIHuRef
CHM1_1852,782,589 - 52,863,825 (-)NCBICHM1_1
T2T-CHM13v2.0852,193,558 - 52,274,823 (-)NCBIT2T-CHM13v2.0
Pcmtd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8517,071,629 - 17,143,803 (-)NCBIGRCr8
mRatBN7.2512,284,711 - 12,355,680 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl512,284,711 - 12,354,899 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx514,452,490 - 14,492,191 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0516,095,455 - 16,135,072 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0515,787,182 - 15,826,884 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0512,132,657 - 12,204,376 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl512,132,657 - 12,199,283 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0516,912,203 - 16,951,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4512,362,759 - 12,401,359 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1512,362,881 - 12,428,586 (-)NCBI
Celera511,707,012 - 11,748,355 (-)NCBICelera
Cytogenetic Map5q11NCBI
Pcmtd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545411,445,182 - 11,481,893 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545411,445,684 - 11,481,076 (-)NCBIChiLan1.0ChiLan1.0
PCMTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2767,449,110 - 67,530,059 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1843,174,316 - 43,255,094 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0848,236,596 - 48,318,715 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1845,621,138 - 45,702,089 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl845,621,138 - 45,702,014 (-)Ensemblpanpan1.1panPan2
PCMTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1293,711,216 - 3,778,654 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl293,713,822 - 3,778,762 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha294,153,541 - 4,221,760 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0293,781,141 - 3,848,610 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl293,781,144 - 3,849,086 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1293,710,245 - 3,778,422 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0293,934,922 - 4,003,187 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0294,009,932 - 4,078,216 (-)NCBIUU_Cfam_GSD_1.0
Pcmtd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530375,788,295 - 75,863,063 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936590978,048 - 1,053,165 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936590978,094 - 1,052,858 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCMTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl478,098,999 - 78,162,963 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1478,099,021 - 78,162,975 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2485,367,431 - 85,391,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCMTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1847,928,290 - 48,009,078 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl847,928,113 - 47,970,860 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603994,025,992 - 94,106,795 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcmtd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247353,582,935 - 3,679,424 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247353,582,967 - 3,679,437 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcmtd1
3141 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1591
Count of miRNA genes:665
Interacting mature miRNAs:896
Transcripts:ENSMUST00000061280, ENSMUST00000182114, ENSMUST00000182306, ENSMUST00000182388, ENSMUST00000182675, ENSMUST00000182823, ENSMUST00000182892, ENSMUST00000183204
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_183028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_373188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC171270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC171328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI462192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY282003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000061280   ⟹   ENSMUSP00000059261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl17,159,144 - 7,243,852 (+)Ensembl
GRCm38.p6 Ensembl17,088,920 - 7,173,628 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182114   ⟹   ENSMUSP00000138680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl17,159,154 - 7,239,822 (+)Ensembl
GRCm38.p6 Ensembl17,088,930 - 7,169,598 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl17,159,328 - 7,231,126 (+)Ensembl
GRCm38.p6 Ensembl17,089,104 - 7,160,902 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182388
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl17,225,091 - 7,233,595 (+)Ensembl
GRCm38.p6 Ensembl17,154,867 - 7,163,371 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182675   ⟹   ENSMUSP00000138149
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl17,217,861 - 7,240,300 (+)Ensembl
GRCm38.p6 Ensembl17,147,637 - 7,170,076 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl17,159,390 - 7,242,346 (+)Ensembl
GRCm38.p6 Ensembl17,089,166 - 7,172,122 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl17,230,309 - 7,242,842 (+)Ensembl
GRCm38.p6 Ensembl17,160,085 - 7,172,618 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl17,230,781 - 7,242,883 (+)Ensembl
GRCm38.p6 Ensembl17,160,557 - 7,172,659 (+)Ensembl
RefSeq Acc Id: NM_183028   ⟹   NP_898849
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3917,159,144 - 7,243,852 (+)NCBI
GRCm3817,088,920 - 7,173,628 (+)NCBI
MGSCv3717,079,001 - 7,163,709 (+)RGD
Celera17,069,105 - 7,153,740 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006495535   ⟹   XP_006495598
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3917,157,301 - 7,243,852 (+)NCBI
GRCm3817,087,077 - 7,173,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006495536   ⟹   XP_006495599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3917,157,301 - 7,243,852 (+)NCBI
GRCm3817,087,077 - 7,173,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165672   ⟹   XP_036021565
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3917,190,418 - 7,243,852 (+)NCBI
Sequence:
RefSeq Acc Id: XR_373188
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3917,157,301 - 7,243,852 (+)NCBI
GRCm3817,087,077 - 7,173,628 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_898849   ⟸   NM_183028
- UniProtKB: P59913 (UniProtKB/Swiss-Prot),   Q3TGS5 (UniProtKB/TrEMBL),   Q6P1Z6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495599   ⟸   XM_006495536
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006495598   ⟸   XM_006495535
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000138149   ⟸   ENSMUST00000182675
RefSeq Acc Id: ENSMUSP00000059261   ⟸   ENSMUST00000061280
RefSeq Acc Id: ENSMUSP00000138680   ⟸   ENSMUST00000182114
RefSeq Acc Id: XP_036021565   ⟸   XM_036165672
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59913-F1-model_v2 AlphaFold P59913 1-357 view protein structure

Promoters
RGD ID:6818220
Promoter ID:MM_KWN:55
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_183028,   UC007AGC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3617,078,716 - 7,079,372 (+)MPROMDB
RGD ID:6873134
Promoter ID:EPDNEW_M18
Type:initiation region
Name:Pcmtd1_1
Description:Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferasedomain containing 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3817,088,984 - 7,089,044EPDNEW
RGD ID:6873136
Promoter ID:EPDNEW_M19
Type:initiation region
Name:Pcmtd1_2
Description:Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferasedomain containing 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3817,089,169 - 7,089,229EPDNEW
RGD ID:6818219
Promoter ID:MM_KWN:56
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:UC007AGD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3617,149,261 - 7,149,761 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2441773 AgrOrtholog
Ensembl Genes ENSMUSG00000051285 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000061280 ENTREZGENE
  ENSMUST00000061280.17 UniProtKB/Swiss-Prot
  ENSMUST00000182114.8 UniProtKB/TrEMBL
  ENSMUST00000182675.8 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PCMT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:319263 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2441773 ENTREZGENE
NCBI Gene 319263 ENTREZGENE
PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11579 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PCMT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pcmtd1 PhenoGen
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P59913 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3TGS5 ENTREZGENE, UniProtKB/TrEMBL
  Q3TM36_MOUSE UniProtKB/TrEMBL
  Q3TSP0_MOUSE UniProtKB/TrEMBL
  Q3UVZ6_MOUSE UniProtKB/TrEMBL
  Q6P1Z6 ENTREZGENE, UniProtKB/TrEMBL
  S4R1A9_MOUSE UniProtKB/TrEMBL
  S4R2K3_MOUSE UniProtKB/TrEMBL