Capza1-ps1 (capping actin protein of muscle Z-line subunit alpha 1, pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Capza1-ps1 (capping actin protein of muscle Z-line subunit alpha 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Capza1-ps1
Name: capping actin protein of muscle Z-line subunit alpha 1, pseudogene 1
RGD ID: 1563947
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: hypothetical protein LOC302630; LOC302630; RGD1563947; similar to RIKEN cDNA 4933400A11; uncharacterized protein LOC302630
Related Functional Gene: Capza1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X27,954,257 - 27,955,120 (+)NCBIGRCr8
mRatBN7.2X24,392,698 - 24,393,561 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_UtxX25,387,661 - 25,388,524 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X28,808,713 - 28,809,576 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X25,040,559 - 25,041,422 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X25,737,281 - 25,738,144 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X26,149,215 - 26,150,078 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X45,030,012 - 45,031,136 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX24,818,011 - 24,818,874 (+)NCBICelera
Cytogenetic MapXq13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Capza1-ps1
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:52
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000004893
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: NM_001106959   ⟹   NP_001100429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0X26,149,171 - 26,150,295 (+)NCBI
RGSC_v3.4X45,030,012 - 45,031,136 (+)RGD
CeleraX24,817,967 - 24,819,091 (+)RGD
Protein Sequences
GenBank Protein EDL90591 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001100429   ⟸   NM_001106959
- Sequence:


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2680 BioCyc
NCBI Gene 302630 ENTREZGENE
PhenoGen Capza1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Capza1-ps1  capping actin protein of muscle Z-line subunit alpha 1, pseudogene 1  RGD1563947  similar to RIKEN cDNA 4933400A11  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1563947  similar to RIKEN cDNA 4933400A11   RGD1563947_predicted  similar to RIKEN cDNA 4933400A11 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563947_predicted  similar to RIKEN cDNA 4933400A11 (predicted)  LOC302630  similar to RIKEN cDNA 4933400A11  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302630  similar to RIKEN cDNA 4933400A11      Symbol and Name status set to provisional 70820 PROVISIONAL