Dzip3 (DAZ interacting zinc finger protein 3) - Rat Genome Database

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Gene: Dzip3 (DAZ interacting zinc finger protein 3) Rattus norvegicus
Analyze
Symbol: Dzip3
Name: DAZ interacting zinc finger protein 3
RGD ID: 1563278
Description: Predicted to enable several functions, including phosphatase binding activity; polyubiquitin modification-dependent protein binding activity; and ubiquitin-protein transferase activity. Predicted to be involved in protein polyubiquitination. Predicted to be active in cytoplasm. Orthologous to human DZIP3 (DAZ interacting zinc finger protein 3); INTERACTS WITH 1,2-dimethylhydrazine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DAZ interacting protein 3, zinc finger; E3 ubiquitin-protein ligase DZIP3; LOC303963; RGD1563278; similar to Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,286,190 - 65,356,314 (+)NCBIGRCr8
mRatBN7.21151,823,235 - 51,893,353 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,823,231 - 51,893,353 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01154,404,777 - 54,475,361 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,404,446 - 54,472,447 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01157,566,079 - 57,637,010 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,065,385 - 53,134,110 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1151,430,027 - 51,500,199 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12538761   PMID:19389623   PMID:22658674  


Genomics

Comparative Map Data
Dzip3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,286,190 - 65,356,314 (+)NCBIGRCr8
mRatBN7.21151,823,235 - 51,893,353 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,823,231 - 51,893,353 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01154,404,777 - 54,475,361 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,404,446 - 54,472,447 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01157,566,079 - 57,637,010 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,065,385 - 53,134,110 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1151,430,027 - 51,500,199 (+)NCBICelera
Cytogenetic Map11q21NCBI
DZIP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383108,589,510 - 108,694,840 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3108,589,705 - 108,694,840 (+)EnsemblGRCh38hg38GRCh38
GRCh373108,308,569 - 108,413,687 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363109,791,274 - 109,896,383 (+)NCBINCBI36Build 36hg18NCBI36
Celera3106,705,261 - 106,810,678 (+)NCBICelera
Cytogenetic Map3q13.13NCBI
HuRef3105,681,863 - 105,787,249 (+)NCBIHuRef
CHM1_13108,272,449 - 108,377,817 (+)NCBICHM1_1
T2T-CHM13v2.03111,309,763 - 111,415,213 (+)NCBIT2T-CHM13v2.0
2310047C04Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391648,744,591 - 48,814,505 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1648,744,595 - 48,814,528 (-)EnsemblGRCm39 Ensembl
GRCm381648,924,228 - 48,994,142 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1648,924,232 - 48,994,165 (-)EnsemblGRCm38mm10GRCm38
MGSCv371648,924,341 - 48,994,225 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361648,925,992 - 48,994,054 (-)NCBIMGSCv36mm8
Celera1649,275,703 - 49,344,494 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1630.75NCBI
Dzip3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554279,496,411 - 9,569,872 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554279,481,196 - 9,571,483 (+)NCBIChiLan1.0ChiLan1.0
DZIP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22106,564,835 - 106,669,889 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13106,569,614 - 106,675,480 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03105,714,315 - 105,819,594 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13112,646,100 - 112,751,305 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3112,646,133 - 112,751,299 (+)Ensemblpanpan1.1panPan2
DZIP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13313,843,426 - 13,928,749 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3313,843,767 - 13,927,189 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3313,949,060 - 14,034,221 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03314,008,926 - 14,094,226 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3314,009,171 - 14,093,803 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13313,878,203 - 13,963,538 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03313,944,619 - 14,029,920 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03314,357,053 - 14,442,414 (+)NCBIUU_Cfam_GSD_1.0
Dzip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602140,485,265 - 140,583,670 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366452,274,792 - 2,358,748 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366452,261,977 - 2,360,354 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DZIP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13150,796,681 - 150,933,797 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113150,796,658 - 150,934,045 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213159,925,933 - 160,016,939 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DZIP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12272,095,723 - 72,193,006 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2272,096,323 - 72,178,913 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604194,281,894 - 94,378,834 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dzip3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473140,434,899 - 40,505,649 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473140,434,405 - 40,541,802 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dzip3
391 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:97
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000002678, ENSRNOT00000059944
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat

Markers in Region
AA799636  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21151,892,966 - 51,893,091 (+)MAPPERmRatBN7.2
Rnor_6.01154,474,975 - 54,475,099NCBIRnor6.0
Rnor_5.01157,636,624 - 57,636,748UniSTSRnor5.0
RGSC_v3.41153,135,493 - 53,135,617UniSTSRGSC3.4
Celera1151,499,813 - 51,499,937UniSTS
Cytogenetic Map11q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 23 14 4 15 4 1 1 74 23 35 8 1
Low 3 20 43 37 4 37 7 9 12 6 3 7
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000002678   ⟹   ENSRNOP00000002678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1151,823,231 - 51,893,353 (+)Ensembl
Rnor_6.0 Ensembl1154,404,446 - 54,472,447 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094530   ⟹   ENSRNOP00000089421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1151,836,937 - 51,893,353 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099511   ⟹   ENSRNOP00000089459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1151,823,231 - 51,893,353 (+)Ensembl
RefSeq Acc Id: NM_001427083   ⟹   NP_001414012
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,286,190 - 65,356,314 (+)NCBI
RefSeq Acc Id: XM_006248289   ⟹   XP_006248351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,286,216 - 65,356,314 (+)NCBI
mRatBN7.21151,823,237 - 51,891,584 (+)NCBI
Rnor_6.01154,404,777 - 54,475,361 (+)NCBI
Rnor_5.01157,566,079 - 57,637,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598152   ⟹   XP_017453641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,286,214 - 65,356,314 (+)NCBI
mRatBN7.21151,823,237 - 51,891,584 (+)NCBI
Rnor_6.01154,404,777 - 54,475,361 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598153   ⟹   XP_017453642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,286,214 - 65,356,314 (+)NCBI
mRatBN7.21151,823,235 - 51,893,353 (+)NCBI
Rnor_6.01154,404,778 - 54,475,361 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598154   ⟹   XP_017453643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,305,155 - 65,356,314 (+)NCBI
mRatBN7.21151,842,198 - 51,893,353 (+)NCBI
Rnor_6.01154,423,942 - 54,475,361 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598155   ⟹   XP_017453644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,286,214 - 65,356,314 (+)NCBI
mRatBN7.21151,823,235 - 51,893,353 (+)NCBI
Rnor_6.01154,404,779 - 54,475,361 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088872   ⟹   XP_038944800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,315,566 - 65,356,314 (+)NCBI
mRatBN7.21151,852,604 - 51,893,353 (+)NCBI
RefSeq Acc Id: XM_039088873   ⟹   XP_038944801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,286,214 - 65,336,087 (+)NCBI
mRatBN7.21151,823,235 - 51,873,114 (+)NCBI
RefSeq Acc Id: XM_039088874   ⟹   XP_038944802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,315,566 - 65,356,314 (+)NCBI
mRatBN7.21151,852,604 - 51,893,353 (+)NCBI
RefSeq Acc Id: XM_063270531   ⟹   XP_063126601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,286,213 - 65,356,314 (+)NCBI
RefSeq Acc Id: XM_063270532   ⟹   XP_063126602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,286,214 - 65,356,314 (+)NCBI
RefSeq Acc Id: XM_063270533   ⟹   XP_063126603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,286,214 - 65,334,483 (+)NCBI
RefSeq Acc Id: XP_006248351   ⟸   XM_006248289
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ABW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453641   ⟸   XM_017598152
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ABW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453642   ⟸   XM_017598153
- Peptide Label: isoform X2
- UniProtKB: D4A1V8 (UniProtKB/TrEMBL),   A0A8I6ABW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453644   ⟸   XM_017598155
- Peptide Label: isoform X4
- UniProtKB: A6IQV3 (UniProtKB/TrEMBL),   A0A8I6ABW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453643   ⟸   XM_017598154
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ABW2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002678   ⟸   ENSRNOT00000002678
RefSeq Acc Id: XP_038944801   ⟸   XM_039088873
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038944800   ⟸   XM_039088872
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038944802   ⟸   XM_039088874
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000089421   ⟸   ENSRNOT00000094530
Ensembl Acc Id: ENSRNOP00000089459   ⟸   ENSRNOT00000099511
RefSeq Acc Id: NP_001414012   ⟸   NM_001427083
- UniProtKB: A0A8I6ABW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126601   ⟸   XM_063270531
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ABW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126602   ⟸   XM_063270532
- Peptide Label: isoform X5
- UniProtKB: A0A8I6ABW2 (UniProtKB/TrEMBL),   A0A8I6ABS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126603   ⟸   XM_063270533
- Peptide Label: isoform X7
Protein Domains
DZIP3-like HEPN   E3 ubiquitin-protein ligase TTC3/DZIP3   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A1V8-F1-model_v2 AlphaFold D4A1V8 1-1174 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698128
Promoter ID:EPDNEW_R8650
Type:multiple initiation site
Name:Dzip3_1
Description:DAZ interacting zinc finger protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01154,404,944 - 54,405,004EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563278 AgrOrtholog
BioCyc Gene G2FUF-21424 BioCyc
Ensembl Genes ENSRNOG00000001956 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002678.9 UniProtKB/TrEMBL
  ENSRNOT00000094530.1 UniProtKB/TrEMBL
  ENSRNOT00000099511.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro DZIP3_RING-H2_finger UniProtKB/TrEMBL
  HEPN_DZIP3 UniProtKB/TrEMBL
  TTC3/DZIP3_dom UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene 303963 ENTREZGENE
PANTHER PTHR15727:SF4 UniProtKB/TrEMBL
  RING FINGER PROTEIN 214 UniProtKB/TrEMBL
Pfam DUF5861 UniProtKB/TrEMBL
  HEPN_DZIP3 UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/TrEMBL
PhenoGen Dzip3 PhenoGen
PROSITE ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001956 RatGTEx
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8I6ABS6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABW2 ENTREZGENE, UniProtKB/TrEMBL
  A6IQV3 ENTREZGENE, UniProtKB/TrEMBL
  D4A1V8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-06-05 Dzip3  DAZ interacting zinc finger protein 3  Dzip3  DAZ interacting protein 3, zinc finger  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 Dzip3  DAZ interacting protein 3, zinc finger  RGD1563278  similar to Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563278  similar to Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog)   RGD1563278_predicted  similar to Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563278_predicted  similar to Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog) (predicted)  LOC303963  similar to Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC303963  similar to Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog)      Symbol and Name status set to provisional 70820 PROVISIONAL