Gxylt1 (glucoside xylosyltransferase 1) - Rat Genome Database

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Gene: Gxylt1 (glucoside xylosyltransferase 1) Rattus norvegicus
Analyze
Symbol: Gxylt1
Name: glucoside xylosyltransferase 1
RGD ID: 1563062
Description: Predicted to enable UDP-xylosyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to be located in membrane. Orthologous to human GXYLT1 (glucoside xylosyltransferase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cefaloridine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Glt8d3; glycosyltransferase 8 domain containing 3; glycosyltransferase 8 domain-containing protein 3; LOC300173; S33-D; similar to CG9996-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87126,280,349 - 126,320,803 (-)NCBIGRCr8
mRatBN7.27124,400,896 - 124,434,682 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7124,400,896 - 124,434,699 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7126,175,473 - 126,208,851 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07128,401,325 - 128,434,702 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07128,322,920 - 128,356,490 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07134,447,578 - 134,495,858 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7134,447,578 - 134,495,835 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07134,118,984 - 134,166,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47131,726,969 - 131,761,134 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7120,799,137 - 120,832,731 (-)NCBICelera
Cytogenetic Map7q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
amenorrhea  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
O-glycan processing  (IBA,ISO,ISS)

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16288221   PMID:19940119   PMID:30169771  


Genomics

Comparative Map Data
Gxylt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87126,280,349 - 126,320,803 (-)NCBIGRCr8
mRatBN7.27124,400,896 - 124,434,682 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7124,400,896 - 124,434,699 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7126,175,473 - 126,208,851 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07128,401,325 - 128,434,702 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07128,322,920 - 128,356,490 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07134,447,578 - 134,495,858 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7134,447,578 - 134,495,835 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07134,118,984 - 134,166,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47131,726,969 - 131,761,134 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7120,799,137 - 120,832,731 (-)NCBICelera
Cytogenetic Map7q35NCBI
GXYLT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381242,081,845 - 42,144,874 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1242,081,845 - 42,144,874 (-)EnsemblGRCh38hg38GRCh38
GRCh371242,475,647 - 42,538,676 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361240,761,914 - 40,824,940 (-)NCBINCBI36Build 36hg18NCBI36
Celera1241,277,461 - 41,340,510 (-)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1239,502,946 - 39,566,034 (-)NCBIHuRef
CHM1_11242,441,063 - 42,504,087 (-)NCBICHM1_1
T2T-CHM13v2.01242,039,739 - 42,102,776 (-)NCBIT2T-CHM13v2.0
Gxylt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391593,137,611 - 93,173,060 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1593,137,623 - 93,173,060 (-)EnsemblGRCm39 Ensembl
GRCm381593,239,730 - 93,275,336 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1593,239,742 - 93,275,179 (-)EnsemblGRCm38mm10GRCm38
MGSCv371593,070,173 - 93,105,515 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361593,067,922 - 93,103,264 (-)NCBIMGSCv36mm8
Celera1595,381,488 - 95,418,772 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1547.34NCBI
Gxylt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555001,479,159 - 1,511,731 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555001,479,159 - 1,511,385 (-)NCBIChiLan1.0ChiLan1.0
GXYLT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21051,998,816 - 52,075,968 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11251,995,551 - 52,072,729 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01246,570,205 - 46,631,899 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11247,445,059 - 47,496,939 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1247,448,871 - 47,491,021 (+)Ensemblpanpan1.1panPan2
GXYLT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12711,754,609 - 11,810,245 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2711,765,072 - 11,807,787 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2734,493,350 - 34,548,355 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02711,951,517 - 12,006,551 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2711,951,375 - 12,089,405 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12711,769,474 - 11,824,431 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02711,800,377 - 11,855,383 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02734,743,882 - 34,794,670 (-)NCBIUU_Cfam_GSD_1.0
Gxylt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494572,256,180 - 72,289,848 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936512880,999 - 908,683 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936512880,458 - 929,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GXYLT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl573,358,769 - 73,408,365 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1573,274,165 - 73,408,359 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GXYLT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11138,320,163 - 38,377,157 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1138,321,991 - 38,377,166 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037208,196,085 - 208,257,506 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gxylt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249171,909,156 - 1,968,608 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249171,904,987 - 1,968,657 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gxylt1
285 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:907
Count of miRNA genes:328
Interacting mature miRNAs:455
Transcripts:ENSRNOT00000058349
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)7116677189127103496Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat

Markers in Region
D7Got125  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27124,429,308 - 124,429,503 (+)MAPPERmRatBN7.2
Rnor_6.07134,490,327 - 134,490,521NCBIRnor6.0
Rnor_5.07134,160,537 - 134,160,731UniSTSRnor5.0
RGSC_v3.47131,755,807 - 131,756,002RGDRGSC3.4
RGSC_v3.47131,755,808 - 131,756,002UniSTSRGSC3.4
RGSC_v3.17131,832,245 - 131,832,439RGD
Celera7120,827,406 - 120,827,600UniSTS
RH 3.4 Map71021.8UniSTS
RH 3.4 Map71021.8RGD
RH 2.0 Map7742.5RGD
Cytogenetic Map7q35UniSTS
BF389068  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27124,402,248 - 124,402,401 (+)MAPPERmRatBN7.2
Rnor_6.07134,448,931 - 134,449,083NCBIRnor6.0
Rnor_5.07134,120,337 - 134,120,489UniSTSRnor5.0
RGSC_v3.47131,728,322 - 131,728,474UniSTSRGSC3.4
Celera7120,800,494 - 120,800,646UniSTS
RH 3.4 Map71021.4UniSTS
Cytogenetic Map7q35UniSTS
RH131635  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27124,400,952 - 124,401,164 (+)MAPPERmRatBN7.2
Rnor_6.07134,447,635 - 134,447,846NCBIRnor6.0
Rnor_5.07134,119,041 - 134,119,252UniSTSRnor5.0
RGSC_v3.47131,727,026 - 131,727,237UniSTSRGSC3.4
Celera7120,799,194 - 120,799,405UniSTS
RH 3.4 Map71021.1UniSTS
Cytogenetic Map7q35UniSTS
RH138193  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27124,410,980 - 124,411,106 (+)MAPPERmRatBN7.2
Rnor_6.07134,471,848 - 134,471,973NCBIRnor6.0
Rnor_5.07134,142,058 - 134,142,183UniSTSRnor5.0
RGSC_v3.47131,737,482 - 131,737,607UniSTSRGSC3.4
Celera7120,809,216 - 120,809,341UniSTS
RH 3.4 Map71021.1UniSTS
Cytogenetic Map7q35UniSTS
AI231622  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27124,403,024 - 124,403,174 (+)MAPPERmRatBN7.2
Rnor_6.07134,449,707 - 134,449,856NCBIRnor6.0
Rnor_5.07134,121,113 - 134,121,262UniSTSRnor5.0
RGSC_v3.47131,729,098 - 131,729,247UniSTSRGSC3.4
Celera7120,801,270 - 120,801,419UniSTS
RH 3.4 Map71018.9UniSTS
Cytogenetic Map7q35UniSTS
AI412638  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27124,436,930 - 124,437,132 (+)MAPPERmRatBN7.2
Rnor_6.07134,498,131 - 134,498,332NCBIRnor6.0
Rnor_5.07134,168,341 - 134,168,542UniSTSRnor5.0
RGSC_v3.47131,763,430 - 131,763,631UniSTSRGSC3.4
Celera7120,835,027 - 120,835,228UniSTS
RH 3.4 Map71017.7UniSTS
Cytogenetic Map7q35UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 7 6 12 6 66 24 38 11
Low 17 50 35 7 35 8 11 8 11 3 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000058349   ⟹   ENSRNOP00000055150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7124,400,896 - 124,434,636 (-)Ensembl
Rnor_6.0 Ensembl7134,447,578 - 134,495,835 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081104   ⟹   ENSRNOP00000073028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7124,405,776 - 124,421,589 (-)Ensembl
Rnor_6.0 Ensembl7134,452,458 - 134,482,607 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099240   ⟹   ENSRNOP00000091433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7124,405,775 - 124,434,699 (-)Ensembl
RefSeq Acc Id: NM_001100887   ⟹   NP_001094357
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87126,280,349 - 126,314,087 (-)NCBI
mRatBN7.27124,400,896 - 124,434,636 (-)NCBI
Rnor_6.07134,447,578 - 134,495,835 (-)NCBI
Rnor_5.07134,118,984 - 134,166,045 (-)NCBI
RGSC_v3.47131,726,969 - 131,761,134 (-)RGD
Celera7120,799,137 - 120,832,731 (-)RGD
Sequence:
RefSeq Acc Id: XM_006242192   ⟹   XP_006242254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87126,280,349 - 126,320,803 (-)NCBI
mRatBN7.27124,400,896 - 124,434,674 (-)NCBI
Rnor_6.07134,447,578 - 134,495,858 (-)NCBI
Rnor_5.07134,118,984 - 134,166,045 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078904   ⟹   XP_038934832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87126,280,349 - 126,305,304 (-)NCBI
mRatBN7.27124,400,896 - 124,434,399 (-)NCBI
RefSeq Acc Id: XM_039078905   ⟹   XP_038934833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87126,289,726 - 126,314,125 (-)NCBI
mRatBN7.27124,410,735 - 124,434,682 (-)NCBI
RefSeq Acc Id: XM_039078906   ⟹   XP_038934834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87126,289,726 - 126,314,125 (-)NCBI
mRatBN7.27124,410,735 - 124,434,680 (-)NCBI
RefSeq Acc Id: XM_039078907   ⟹   XP_038934835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87126,280,349 - 126,298,532 (-)NCBI
mRatBN7.27124,405,667 - 124,419,083 (-)NCBI
RefSeq Acc Id: NP_001094357   ⟸   NM_001100887
- UniProtKB: Q6GX83 (UniProtKB/Swiss-Prot),   A6K7S6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242254   ⟸   XM_006242192
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AFF2 (UniProtKB/TrEMBL),   A6K7S5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000055150   ⟸   ENSRNOT00000058349
RefSeq Acc Id: ENSRNOP00000073028   ⟸   ENSRNOT00000081104
RefSeq Acc Id: XP_038934832   ⟸   XM_039078904
- Peptide Label: isoform X2
- UniProtKB: B2RZ91 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934835   ⟸   XM_039078907
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038934833   ⟸   XM_039078905
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934834   ⟸   XM_039078906
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000091433   ⟸   ENSRNOT00000099240

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6GX83-F1-model_v2 AlphaFold Q6GX83 1-435 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695600
Promoter ID:EPDNEW_R6125
Type:multiple initiation site
Name:Gxylt1_1
Description:glucoside xylosyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07134,495,859 - 134,495,919EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563062 AgrOrtholog
BioCyc Gene G2FUF-32340 BioCyc
Ensembl Genes ENSRNOG00000005234 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055011748 UniProtKB/Swiss-Prot
  ENSRNOG00060006500 UniProtKB/Swiss-Prot
  ENSRNOG00065016694 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000058349 ENTREZGENE
  ENSRNOT00000058349.4 UniProtKB/Swiss-Prot
  ENSRNOT00000081104.2 UniProtKB/TrEMBL
  ENSRNOT00000099240.1 UniProtKB/TrEMBL
  ENSRNOT00055019968 UniProtKB/Swiss-Prot
  ENSRNOT00060010653 UniProtKB/Swiss-Prot
  ENSRNOT00065027844 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:8363586 IMAGE-MGC_LOAD
InterPro Glyco_trans_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:300173 UniProtKB/Swiss-Prot
MGC_CLONE MGC:189392 IMAGE-MGC_LOAD
NCBI Gene 300173 ENTREZGENE
PANTHER GLUCOSIDE XYLOSYLTRANSFERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IP22168P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_transf_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gxylt1 PhenoGen
RatGTEx ENSRNOG00000005234 RatGTEx
  ENSRNOG00055011748 RatGTEx
  ENSRNOG00060006500 RatGTEx
  ENSRNOG00065016694 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AFF2 ENTREZGENE, UniProtKB/TrEMBL
  A6K7S5 ENTREZGENE, UniProtKB/TrEMBL
  A6K7S6 ENTREZGENE, UniProtKB/TrEMBL
  B2RZ91 ENTREZGENE, UniProtKB/TrEMBL
  GXLT1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Gxylt1  glucoside xylosyltransferase 1  Glt8d3  glycosyltransferase 8 domain containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Glt8d3  glycosyltransferase 8 domain containing 3  LOC300173  similar to CG9996-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC300173  similar to CG9996-PA      Symbol and Name status set to provisional 70820 PROVISIONAL