Rpl27al2 (ribosomal protein L27A like 2) - Rat Genome Database

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Gene: Rpl27al2 (ribosomal protein L27A like 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl27al2 (Ensembl: RGD1560633)
Name: ribosomal protein L27A like 2 (Ensembl:similar to ribosomal protein L27a)
RGD ID: 1560633
Description: INTERACTS WITH 17beta-estradiol; ammonium chloride; bisphenol A
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L27a-like; large ribosomal subunit protein uL15-like; LOC292474; RGD1560633; similar to ribosomal protein L27a
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815,990,702 - 5,995,116 (-)NCBIGRCr8
mRatBN7.214,170,994 - 4,174,755 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl189,563,034 - 89,563,740 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.013,848,591 - 3,849,086 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13,848,619 - 3,849,080 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015,521,652 - 5,522,115 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414,414,848 - 4,415,294 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera12,712,416 - 2,712,907 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl27al2
17 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 1 7 31 39 37 18 15 18 5 71 35 18 12 24 19

Sequence


Ensembl Acc Id: ENSRNOT00000045301   ⟹   ENSRNOP00000048422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl189,563,034 - 89,563,740 (+)Ensembl
Rnor_6.0 Ensembl13,848,619 - 3,849,080 (-)Ensembl
RefSeq Acc Id: XM_039095459   ⟹   XP_038951387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815,990,702 - 5,995,116 (-)NCBI
mRatBN7.214,170,994 - 4,174,755 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038951387 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000048422   ⟸   ENSRNOT00000045301
RefSeq Acc Id: XP_038951387   ⟸   XM_039095459

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689486
Promoter ID:EPDNEW_R10
Type:multiple initiation site
Name:RGD1560633_1
Description:similar to ribosomal protein L27a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.013,849,089 - 3,849,149EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560633 AgrOrtholog
BioCyc Gene G2FUF-62423 BioCyc
Ensembl Genes ENSRNOG00000031859 Ensembl
NCBI Gene 292474 ENTREZGENE
PhenoGen Rpl27al2 PhenoGen
RatGTEx ENSRNOG00000031859 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl27al2  ribosomal protein L27A like 2  RGD1560633  similar to ribosomal protein L27a  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1560633  similar to ribosomal protein L27a   RGD1560633_predicted  similar to ribosomal protein L27a (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560633_predicted  similar to ribosomal protein L27a (predicted)  LOC292474  similar to ribosomal protein L27a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC292474  similar to ribosomal protein L27a      Symbol and Name status set to provisional 70820 PROVISIONAL