Thada (THADA, armadillo repeat containing) - Rat Genome Database

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Gene: Thada (THADA, armadillo repeat containing) Rattus norvegicus
Analyze
Symbol: Thada
Name: THADA, armadillo repeat containing
RGD ID: 1560519
Description: Predicted to enable enzyme regulator activity. Predicted to be involved in negative regulation of endoplasmic reticulum calcium ion concentration and tRNA nucleoside ribose methylation. Predicted to be located in endoplasmic reticulum. Orthologous to human THADA (THADA armadillo repeat containing); INTERACTS WITH 3-chloropropane-1,2-diol; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC313865; RGD1560519; similar to thyroid adenoma associated; thyroid adenoma associated; tRNA (32-2'-O)-methyltransferase regulator THADA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8615,936,593 - 16,240,523 (+)NCBIGRCr8
mRatBN7.2610,183,942 - 10,488,007 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl610,183,982 - 10,487,159 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx610,479,367 - 10,777,126 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0610,788,749 - 11,086,523 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0610,304,180 - 10,603,553 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.067,423,555 - 7,741,431 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl67,423,520 - 7,741,414 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.067,364,117 - 7,679,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.467,537,861 - 7,832,899 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera69,905,532 - 10,196,286 (+)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:28399403  


Genomics

Comparative Map Data
Thada
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8615,936,593 - 16,240,523 (+)NCBIGRCr8
mRatBN7.2610,183,942 - 10,488,007 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl610,183,982 - 10,487,159 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx610,479,367 - 10,777,126 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0610,788,749 - 11,086,523 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0610,304,180 - 10,603,553 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.067,423,555 - 7,741,431 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl67,423,520 - 7,741,414 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.067,364,117 - 7,679,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.467,537,861 - 7,832,899 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera69,905,532 - 10,196,286 (+)NCBICelera
Cytogenetic Map6q12NCBI
THADA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38243,230,851 - 43,596,038 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl243,230,851 - 43,596,038 (-)EnsemblGRCh38hg38GRCh38
GRCh37243,457,990 - 43,823,177 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36243,311,479 - 43,676,689 (-)NCBINCBI36Build 36hg18NCBI36
Celera243,297,429 - 43,661,961 (-)NCBICelera
Cytogenetic Map2p21NCBI
HuRef243,193,304 - 43,559,131 (-)NCBIHuRef
CHM1_1243,387,316 - 43,752,783 (-)NCBICHM1_1
T2T-CHM13v2.0243,236,217 - 43,601,426 (-)NCBIT2T-CHM13v2.0
Thada
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391784,497,484 - 84,773,674 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1784,497,504 - 84,773,633 (-)EnsemblGRCm39 Ensembl
GRCm381784,190,056 - 84,466,246 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1784,190,076 - 84,466,205 (-)EnsemblGRCm38mm10GRCm38
MGSCv371784,589,396 - 84,865,548 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361784,098,382 - 84,374,634 (-)NCBIMGSCv36mm8
Celera1788,550,477 - 88,831,287 (-)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1755.02NCBI
Thada
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544110,470,533 - 10,774,601 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544110,471,555 - 10,792,881 (-)NCBIChiLan1.0ChiLan1.0
THADA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21282,825,321 - 83,187,911 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A82,829,304 - 83,191,881 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A43,320,165 - 43,682,764 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A44,166,091 - 44,529,671 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A44,166,091 - 44,529,599 (-)Ensemblpanpan1.1panPan2
THADA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11045,754,873 - 46,084,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1045,755,985 - 46,081,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1045,617,371 - 45,944,584 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01046,630,363 - 46,962,738 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1046,632,736 - 46,962,684 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11046,341,616 - 46,669,071 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01046,632,340 - 46,959,466 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01046,814,905 - 47,142,341 (-)NCBIUU_Cfam_GSD_1.0
Thada
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629236,869,605 - 37,184,817 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365088,297,612 - 8,614,842 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365088,298,239 - 8,612,909 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THADA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1396,872,178 - 97,197,051 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23103,176,163 - 103,255,697 (+)NCBISscrofa10.2Sscrofa10.2susScr3
THADA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11463,654,695 - 64,015,354 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1463,668,048 - 64,018,473 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604547,886,814 - 48,237,698 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thada
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473824,751,466 - 25,083,909 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473824,750,657 - 25,087,278 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Thada
2061 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:291
Count of miRNA genes:178
Interacting mature miRNAs:203
Transcripts:ENSRNOT00000038246
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat

Markers in Region
D6Pas1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.067,513,619 - 7,513,699NCBIRnor5.0
RGSC_v3.467,680,593 - 7,680,672UniSTSRGSC3.4
RGSC_v3.167,680,592 - 7,680,672RGD
Celera610,047,424 - 10,047,527UniSTS
Cytogenetic Map6q12UniSTS
D6Wox10  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.067,513,619 - 7,513,699NCBIRnor5.0
Rnor_5.067,513,618 - 7,513,699NCBIRnor5.0
RGSC_v3.467,680,592 - 7,680,672RGDRGSC3.4
RGSC_v3.467,680,593 - 7,680,672UniSTSRGSC3.4
RGSC_v3.167,680,592 - 7,680,672RGD
Celera610,047,424 - 10,047,527UniSTS
z3815  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,150,325 - 10,150,459 (-)MAPPERmRatBN7.2
Rnor_6.067,775,059 - 7,775,192NCBIRnor6.0
Rnor_5.067,712,851 - 7,712,984UniSTSRnor5.0
RGSC_v3.467,868,801 - 7,868,934UniSTSRGSC3.4
Celera69,870,173 - 9,870,306UniSTS
Cytogenetic Map6q12UniSTS
BF404107  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,104,101 - 10,104,278 (-)MAPPERmRatBN7.2
Rnor_6.067,821,732 - 7,821,908NCBIRnor6.0
Rnor_6.067,734,558 - 7,734,734NCBIRnor6.0
Rnor_5.067,673,754 - 7,673,930UniSTSRnor5.0
Rnor_5.067,759,524 - 7,759,700UniSTSRnor5.0
RGSC_v3.467,915,293 - 7,915,469UniSTSRGSC3.4
Celera69,824,294 - 9,824,470UniSTS
Cytogenetic Map6q12UniSTS
RH138853  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,185,325 - 10,185,483 (-)MAPPERmRatBN7.2
Rnor_6.067,739,897 - 7,740,054NCBIRnor6.0
Rnor_5.067,677,689 - 7,677,846UniSTSRnor5.0
RGSC_v3.467,833,415 - 7,833,572UniSTSRGSC3.4
Celera69,904,859 - 9,905,016UniSTS
Cytogenetic Map6q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 26 10 17 10 1 1 59 35 34 10 1
Low 3 35 31 31 2 31 7 10 15 7 1 7
Below cutoff

Sequence


Ensembl Acc Id: ENSRNOT00000038246   ⟹   ENSRNOP00000032728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl610,183,982 - 10,487,159 (+)Ensembl
Rnor_6.0 Ensembl67,423,520 - 7,741,414 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099338   ⟹   ENSRNOP00000081786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl610,183,982 - 10,487,159 (+)Ensembl
RefSeq Acc Id: NM_001191769   ⟹   NP_001178698
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,938,651 - 16,239,749 (+)NCBI
mRatBN7.2610,185,999 - 10,487,159 (+)NCBI
Rnor_6.067,424,329 - 7,739,381 (-)NCBI
Rnor_5.067,364,117 - 7,679,218 (-)NCBI
Celera69,905,532 - 10,196,286 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239705   ⟹   XP_006239767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,936,593 - 16,240,523 (+)NCBI
mRatBN7.2610,183,942 - 10,488,007 (+)NCBI
Rnor_6.067,423,555 - 7,741,431 (-)NCBI
Rnor_5.067,364,117 - 7,679,218 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239707   ⟹   XP_006239769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,936,593 - 16,240,523 (+)NCBI
mRatBN7.2610,183,942 - 10,488,007 (+)NCBI
Rnor_6.067,423,555 - 7,741,431 (-)NCBI
Rnor_5.067,364,117 - 7,679,218 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594120   ⟹   XP_017449609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,936,612 - 16,240,523 (+)NCBI
mRatBN7.2610,183,956 - 10,486,621 (+)NCBI
Rnor_6.067,423,555 - 7,741,431 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112156   ⟹   XP_038968084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,936,593 - 16,071,864 (+)NCBI
mRatBN7.2610,183,942 - 10,308,229 (+)NCBI
RefSeq Acc Id: XM_039112158   ⟹   XP_038968086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,936,593 - 16,092,890 (+)NCBI
mRatBN7.2610,183,942 - 10,340,292 (+)NCBI
RefSeq Acc Id: XM_039112159   ⟹   XP_038968087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,936,593 - 16,000,555 (+)NCBI
mRatBN7.2610,183,942 - 10,241,949 (+)NCBI
RefSeq Acc Id: XM_063261828   ⟹   XP_063117898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,936,771 - 16,240,523 (+)NCBI
RefSeq Acc Id: XM_063261829   ⟹   XP_063117899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,936,593 - 16,074,284 (+)NCBI
RefSeq Acc Id: XR_005505507
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,936,593 - 16,174,058 (+)NCBI
mRatBN7.2610,183,942 - 10,421,476 (+)NCBI
RefSeq Acc Id: XR_010052081
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,936,593 - 16,195,967 (+)NCBI
RefSeq Acc Id: NP_001178698   ⟸   NM_001191769
- UniProtKB: D3ZVT2 (UniProtKB/TrEMBL),   A0A8I5ZTM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239769   ⟸   XM_006239707
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZTM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239767   ⟸   XM_006239705
- Peptide Label: isoform X1
- UniProtKB: D3ZVT2 (UniProtKB/TrEMBL),   A0A8I5ZTM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449609   ⟸   XM_017594120
- Peptide Label: isoform X1
- UniProtKB: D3ZVT2 (UniProtKB/TrEMBL),   A0A8I5ZTM5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032728   ⟸   ENSRNOT00000038246
RefSeq Acc Id: XP_038968086   ⟸   XM_039112158
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038968084   ⟸   XM_039112156
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968087   ⟸   XM_039112159
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000081786   ⟸   ENSRNOT00000099338
RefSeq Acc Id: XP_063117899   ⟸   XM_063261829
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063117898   ⟸   XM_063261828
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTM5 (UniProtKB/TrEMBL),   D3ZVT2 (UniProtKB/TrEMBL)
Protein Domains
DUF2428

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVT2-F1-model_v2 AlphaFold D3ZVT2 1-1937 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694373
Promoter ID:EPDNEW_R4898
Type:initiation region
Name:Thada_1
Description:THADA, armadillo repeat containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.067,741,407 - 7,741,467EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560519 AgrOrtholog
BioCyc Gene G2FUF-38639 BioCyc
Ensembl Genes ENSRNOG00000025899 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038246.7 UniProtKB/TrEMBL
  ENSRNOT00000099338.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  DUF2428_death-receptor-like UniProtKB/TrEMBL
  tRNA_methyltransferase_THADA UniProtKB/TrEMBL
KEGG Report rno:313865 UniProtKB/TrEMBL
NCBI Gene 313865 ENTREZGENE
PANTHER THADA/DEATH RECEPTOR INTERACTING PROTEIN UniProtKB/TrEMBL
  THYROID ADENOMA-ASSOCIATED PROTEIN UniProtKB/TrEMBL
Pfam DUF2428 UniProtKB/TrEMBL
PhenoGen Thada PhenoGen
RatGTEx ENSRNOG00000025899 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I5ZTM5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVT2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-05 Thada  THADA, armadillo repeat containing  Thada  thyroid adenoma associated  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-28 Thada  thyroid adenoma associated  RGD1560519_predicted  similar to thyroid adenoma associated (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1560519_predicted  similar to thyroid adenoma associated (predicted)  LOC313865  similar to thyroid adenoma associated  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC313865  similar to thyroid adenoma associated      Symbol and Name status set to provisional 70820 PROVISIONAL