CD164 (CD164 molecule) - Rat Genome Database

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Gene: CD164 (CD164 molecule) Sus scrofa
Analyze
Symbol: CD164
Name: CD164 molecule
RGD ID: 14274729
Description: INVOLVED IN cell adhesion (ortholog); heterophilic cell-cell adhesion (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 66 (ortholog); lung cancer (ortholog); Spontaneous Abortions (ortholog); FOUND IN endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sialomucin core protein 24
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,441,575 - 75,458,145 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1175,441,568 - 75,458,140 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,719,539 - 84,735,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endosome  (IBA,IEA,ISO)
lysosome  (IBA,IEA)
membrane  (IEA)
plasma membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
CD164
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,441,575 - 75,458,145 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1175,441,568 - 75,458,140 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,719,539 - 84,735,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD164
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386109,366,514 - 109,382,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6109,366,514 - 109,382,469 (-)Ensemblhg38GRCh38
GRCh376109,687,717 - 109,703,670 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,794,414 - 109,810,340 (-)NCBIBuild 36Build 36hg18NCBI36
Build 346109,794,415 - 109,810,340NCBI
Celera6110,434,305 - 110,450,350 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6107,253,904 - 107,269,946 (-)NCBIHuRef
CHM1_16109,950,828 - 109,966,874 (-)NCBICHM1_1
T2T-CHM13v2.06110,544,551 - 110,560,504 (-)NCBIT2T-CHM13v2.0
Cd164
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391041,395,496 - 41,407,038 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1041,395,410 - 41,407,044 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381041,519,500 - 41,531,042 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1041,519,414 - 41,531,048 (+)Ensemblmm10GRCm38
MGSCv371041,239,306 - 41,250,848 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361041,207,915 - 41,219,457 (+)NCBIMGSCv36mm8
Celera1042,405,747 - 42,417,290 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.46NCBI
Cd164
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,606,439 - 46,618,015 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2046,606,107 - 46,638,649 (+)EnsemblGRCr8
mRatBN7.22045,024,051 - 45,035,628 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2045,023,973 - 45,035,634 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2046,741,543 - 46,753,119 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02046,391,718 - 46,403,294 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02047,098,205 - 47,109,771 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd2046,623,890 - 46,635,466 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive2047,691,593 - 47,703,169 (+)NCBILyon_Normotensive
Lyon_Hypertensive2047,753,289 - 47,764,865 (+)NCBILyon_Hypertensive
F344_StmMcwi2046,574,739 - 46,586,315 (+)NCBIF344_StmMcwi
Rnor_6.02046,250,418 - 46,261,994 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,250,363 - 46,261,994 (+)Ensemblrn6Rnor6.0
Rnor_5.02047,942,773 - 47,954,349 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42045,486,590 - 45,498,166 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2054,918,183 - 54,929,760 (-)NCBICelera
RGSC_v3.12045,509,600 - 45,521,176 (+)NCBI
Cytogenetic Map20q12NCBI
Cd164
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541134,423,727 - 34,439,295 (-)NCBIChiLan1.0ChiLan1.0
CD164
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25129,375,156 - 129,394,682 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16127,266,493 - 127,284,189 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06107,169,540 - 107,185,815 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16111,218,303 - 111,234,595 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6111,218,303 - 111,234,203 (-)EnsemblpanPan2panpan1.1
CD164
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11266,295,444 - 66,309,691 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1266,297,248 - 66,310,186 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1266,115,241 - 66,129,486 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01267,178,245 - 67,192,476 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1267,175,654 - 67,192,972 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11266,528,513 - 66,542,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01266,377,373 - 66,391,557 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01266,649,181 - 66,663,417 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cd164
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946101,235,851 - 101,250,004 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365645,510,718 - 5,522,637 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD164
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11364,482,079 - 64,498,540 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1364,481,790 - 64,499,135 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604036,773,505 - 36,790,192 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd164
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624916643,145 - 656,266 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cd164
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11841,219,164 - 41,230,835 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in CD164
220 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000004877   ⟹   ENSSSCP00000004762
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl175,441,575 - 75,457,888 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000033167   ⟹   ENSSSCP00000030415
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl175,441,575 - 75,457,898 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000074745   ⟹   ENSSSCP00000065863
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl175,443,300 - 75,458,145 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000082397   ⟹   ENSSSCP00000061923
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl175,441,575 - 75,458,145 (-)Ensembl
RefSeq Acc Id: XM_001924626   ⟹   XP_001924661
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1175,441,568 - 75,458,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090988   ⟹   XP_020946647
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1175,441,568 - 75,457,911 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001924661   ⟸   XM_001924626
- Peptide Label: isoform X1
- UniProtKB: F1RZP7 (UniProtKB/TrEMBL),   A0A4X1VE80 (UniProtKB/TrEMBL),   K9IVV8 (UniProtKB/TrEMBL),   A0A4X1VCI3 (UniProtKB/TrEMBL),   A0A8D0IAJ2 (UniProtKB/TrEMBL),   A0A8D1SLJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946647   ⟸   XM_021090988
- Peptide Label: isoform X2
- UniProtKB: A0A4X1VE84 (UniProtKB/TrEMBL),   K7GR89 (UniProtKB/TrEMBL),   A0A4X1VCI3 (UniProtKB/TrEMBL),   F1RZP7 (UniProtKB/TrEMBL),   A0A8D0IAJ2 (UniProtKB/TrEMBL),   A0A8D0IAS9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000065863   ⟸   ENSSSCT00000074745
Ensembl Acc Id: ENSSSCP00000004762   ⟸   ENSSSCT00000004877
Ensembl Acc Id: ENSSSCP00000030415   ⟸   ENSSSCT00000033167
Ensembl Acc Id: ENSSSCP00000061923   ⟸   ENSSSCT00000082397


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004414 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015003068 UniProtKB/TrEMBL
  ENSSSCG00025053680 UniProtKB/TrEMBL
  ENSSSCG00030060196 UniProtKB/TrEMBL
  ENSSSCG00035068946 UniProtKB/TrEMBL
  ENSSSCG00040049409 UniProtKB/TrEMBL
  ENSSSCG00045027648 UniProtKB/TrEMBL
  ENSSSCG00050016233 UniProtKB/TrEMBL
  ENSSSCG00055016091 UniProtKB/TrEMBL
  ENSSSCG00060006930 UniProtKB/TrEMBL
  ENSSSCG00065051848 UniProtKB/TrEMBL
  ENSSSCG00070023213 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004877.5 UniProtKB/TrEMBL
  ENSSSCT00000033167 ENTREZGENE
  ENSSSCT00000033167.4 UniProtKB/TrEMBL
  ENSSSCT00000074745.2 UniProtKB/TrEMBL
  ENSSSCT00000082397 ENTREZGENE
  ENSSSCT00000082397.2 UniProtKB/TrEMBL
  ENSSSCT00015003908.1 UniProtKB/TrEMBL
  ENSSSCT00015003922.1 UniProtKB/TrEMBL
  ENSSSCT00015003936.1 UniProtKB/TrEMBL
  ENSSSCT00015003949.1 UniProtKB/TrEMBL
  ENSSSCT00025073408.1 UniProtKB/TrEMBL
  ENSSSCT00025073583.1 UniProtKB/TrEMBL
  ENSSSCT00025073705.1 UniProtKB/TrEMBL
  ENSSSCT00025073788.1 UniProtKB/TrEMBL
  ENSSSCT00030084082.1 UniProtKB/TrEMBL
  ENSSSCT00030084106.1 UniProtKB/TrEMBL
  ENSSSCT00030084127.1 UniProtKB/TrEMBL
  ENSSSCT00030084154.1 UniProtKB/TrEMBL
  ENSSSCT00035093132.1 UniProtKB/TrEMBL
  ENSSSCT00035093167.1 UniProtKB/TrEMBL
  ENSSSCT00035093206.1 UniProtKB/TrEMBL
  ENSSSCT00035093240.1 UniProtKB/TrEMBL
  ENSSSCT00040066620.1 UniProtKB/TrEMBL
  ENSSSCT00040066697.1 UniProtKB/TrEMBL
  ENSSSCT00040066784.1 UniProtKB/TrEMBL
  ENSSSCT00040066855.1 UniProtKB/TrEMBL
  ENSSSCT00045047100.1 UniProtKB/TrEMBL
  ENSSSCT00045047276.1 UniProtKB/TrEMBL
  ENSSSCT00045047367.1 UniProtKB/TrEMBL
  ENSSSCT00045047471.1 UniProtKB/TrEMBL
  ENSSSCT00050022103.1 UniProtKB/TrEMBL
  ENSSSCT00050022112.1 UniProtKB/TrEMBL
  ENSSSCT00050022125.1 UniProtKB/TrEMBL
  ENSSSCT00050022144.1 UniProtKB/TrEMBL
  ENSSSCT00055031713.1 UniProtKB/TrEMBL
  ENSSSCT00055031812.1 UniProtKB/TrEMBL
  ENSSSCT00055031871.1 UniProtKB/TrEMBL
  ENSSSCT00055031917.1 UniProtKB/TrEMBL
  ENSSSCT00060008847.1 UniProtKB/TrEMBL
  ENSSSCT00060008858.1 UniProtKB/TrEMBL
  ENSSSCT00060008863.1 UniProtKB/TrEMBL
  ENSSSCT00060008866.1 UniProtKB/TrEMBL
  ENSSSCT00065070991.1 UniProtKB/TrEMBL
  ENSSSCT00065071003.1 UniProtKB/TrEMBL
  ENSSSCT00065071006.1 UniProtKB/TrEMBL
  ENSSSCT00065071015.1 UniProtKB/TrEMBL
  ENSSSCT00070046275.1 UniProtKB/TrEMBL
  ENSSSCT00070046280.1 UniProtKB/TrEMBL
  ENSSSCT00070046284.1 UniProtKB/TrEMBL
  ENSSSCT00070046288.1 UniProtKB/TrEMBL
InterPro CD164_MGC24 UniProtKB/TrEMBL
KEGG Report ssc:100152548 UniProtKB/TrEMBL
NCBI Gene CD164 ENTREZGENE
PANTHER PTHR11337 UniProtKB/TrEMBL
  SIALOMUCIN CORE PROTEIN 24 UniProtKB/TrEMBL
Pfam MGC-24 UniProtKB/TrEMBL
PRINTS CD164ANTIGEN UniProtKB/TrEMBL
UniProt A0A4X1VBK4_PIG UniProtKB/TrEMBL
  A0A4X1VCI3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VE80 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VE84 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QV80_PIG UniProtKB/TrEMBL
  A0A8D0IAJ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IAS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SLJ5 ENTREZGENE, UniProtKB/TrEMBL
  F1RZP7 ENTREZGENE
  K7GR89 ENTREZGENE
  K9IVV8 ENTREZGENE
UniProt Secondary F1RZP7 UniProtKB/TrEMBL
  K7GR89 UniProtKB/TrEMBL
  K9IVV8 UniProtKB/TrEMBL
VGNC ID VGNC:109374 ENTREZGENE