CD164 (CD164 molecule) - Rat Genome Database
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Gene: CD164 (CD164 molecule) Homo sapiens
Analyze
Symbol: CD164
Name: CD164 molecule
RGD ID: 736961
HGNC Page HGNC
Description: Involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules. Localizes to endosome; lysosome; and plasma membrane. Implicated in autosomal dominant nonsyndromic deafness 66.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: cd164 antigen; CD164 antigen, sialomucin; CD164 molecule, sialomucin; CD164 variant C; deafness, autosomal dominant 66; DFNA66; endolyn; MGC-24; MGC-24v; MUC-24; multi-glycosylated core protein 24; sialomucin core protein 24
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6109,366,514 - 109,382,467 (-)EnsemblGRCh38hg38GRCh38
GRCh386109,366,514 - 109,382,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376109,687,717 - 109,703,762 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,794,414 - 109,810,340 (-)NCBINCBI36hg18NCBI36
Build 346109,794,415 - 109,810,340NCBI
Celera6110,434,305 - 110,450,350 (-)NCBI
Cytogenetic Map6q21NCBI
HuRef6107,253,904 - 107,269,946 (-)NCBIHuRef
CHM1_16109,950,828 - 109,966,874 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
1. GOA_HUMAN data from the GO Consortium
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1478919   PMID:8889548   PMID:9680353   PMID:9763543   PMID:10491205   PMID:10878358   PMID:11027692   PMID:11862985   PMID:12477932   PMID:14574404   PMID:15916720   PMID:16341674  
PMID:16859559   PMID:16924678   PMID:17077324   PMID:18029348   PMID:18391951   PMID:18624398   PMID:18854154   PMID:19322201   PMID:19862010   PMID:20139978   PMID:20872290   PMID:21873635  
PMID:21999799   PMID:22409183   PMID:23414517   PMID:23446634   PMID:23792457   PMID:24094005   PMID:24756834   PMID:25275127   PMID:25416956   PMID:25980612   PMID:26197441   PMID:26524186  
PMID:27376157   PMID:27766406   PMID:28259931   PMID:30022623   PMID:31160568   PMID:31815296   PMID:32296183   PMID:32726126  


Genomics

Comparative Map Data
CD164
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6109,366,514 - 109,382,467 (-)EnsemblGRCh38hg38GRCh38
GRCh386109,366,514 - 109,382,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376109,687,717 - 109,703,762 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,794,414 - 109,810,340 (-)NCBINCBI36hg18NCBI36
Build 346109,794,415 - 109,810,340NCBI
Celera6110,434,305 - 110,450,350 (-)NCBI
Cytogenetic Map6q21NCBI
HuRef6107,253,904 - 107,269,946 (-)NCBIHuRef
CHM1_16109,950,828 - 109,966,874 (-)NCBICHM1_1
Cd164
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391041,395,496 - 41,407,038 (+)NCBIGRCm39mm39
GRCm381041,519,500 - 41,531,042 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1041,519,414 - 41,531,048 (+)EnsemblGRCm38mm10GRCm38
MGSCv371041,239,306 - 41,250,848 (+)NCBIGRCm37mm9NCBIm37
MGSCv361041,207,915 - 41,219,457 (+)NCBImm8
Celera1042,405,747 - 42,417,290 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.46NCBI
Cd164
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02046,250,418 - 46,261,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,250,363 - 46,261,994 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02047,942,773 - 47,954,349 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42045,486,590 - 45,498,166 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12045,509,600 - 45,521,176 (+)NCBI
Celera2054,918,183 - 54,929,760 (-)NCBICelera
Cytogenetic Map20q12NCBI
Cd164
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541134,423,727 - 34,439,295 (-)NCBIChiLan1.0ChiLan1.0
CD164
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16111,218,303 - 111,234,595 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6111,218,303 - 111,234,203 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06107,169,540 - 107,185,815 (-)NCBIMhudiblu_PPA_v0panPan3
CD164
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1266,297,248 - 66,310,186 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11266,295,444 - 66,309,691 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cd164
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365645,510,718 - 5,522,637 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD164
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,441,568 - 75,458,145 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1175,441,568 - 75,458,140 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,719,539 - 84,735,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD164
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1364,481,790 - 64,499,135 (+)Ensembl
ChlSab1.11364,482,079 - 64,498,540 (+)NCBI
Cd164
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624916643,145 - 656,266 (-)NCBI

Position Markers
RH46836  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376109,687,826 - 109,687,966UniSTSGRCh37
Build 366109,794,519 - 109,794,659RGDNCBI36
Celera6110,434,414 - 110,434,554RGD
Cytogenetic Map6q21UniSTS
HuRef6107,254,013 - 107,254,153UniSTS
GeneMap99-GB4 RH Map6460.02UniSTS
CD164_1595  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376109,687,699 - 109,688,530UniSTSGRCh37
Build 366109,794,392 - 109,795,223RGDNCBI36
Celera6110,434,287 - 110,435,118RGD
HuRef6107,253,886 - 107,254,717UniSTS
STS-N27287  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376109,689,646 - 109,689,819UniSTSGRCh37
Build 366109,796,339 - 109,796,512RGDNCBI36
Celera6110,436,234 - 110,436,407RGD
Cytogenetic Map6q21UniSTS
HuRef6107,255,833 - 107,256,006UniSTS
GeneMap99-GB4 RH Map6459.92UniSTS
NCBI RH Map61404.5UniSTS
WI-18149  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376109,689,160 - 109,689,259UniSTSGRCh37
Build 366109,795,853 - 109,795,952RGDNCBI36
Celera6110,435,748 - 110,435,847RGD
Cytogenetic Map6q21UniSTS
HuRef6107,255,347 - 107,255,446UniSTS
GeneMap99-GB4 RH Map6461.68UniSTS
Whitehead-RH Map6686.6UniSTS
NCBI RH Map61401.4UniSTS
SHGC-12821  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376109,688,862 - 109,689,196UniSTSGRCh37
Build 366109,795,555 - 109,795,889RGDNCBI36
Celera6110,435,450 - 110,435,784RGD
Cytogenetic Map6q21UniSTS
HuRef6107,255,049 - 107,255,383UniSTS
GeneMap99-G3 RH Map61375.0UniSTS
RH17374  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376109,687,827 - 109,687,982UniSTSGRCh37
Build 366109,794,520 - 109,794,675RGDNCBI36
Celera6110,434,415 - 110,434,570RGD
Cytogenetic Map6q21UniSTS
HuRef6107,254,014 - 107,254,169UniSTS
GeneMap99-GB4 RH Map6466.61UniSTS
NCBI RH Map61401.4UniSTS
RH37462  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376109,699,716 - 109,699,877UniSTSGRCh37
Build 366109,806,409 - 109,806,570RGDNCBI36
Celera6110,446,304 - 110,446,465RGD
Cytogenetic Map6q21UniSTS
HuRef6107,265,901 - 107,266,062UniSTS
GeneMap99-GB4 RH Map6459.92UniSTS
NCBI RH Map61404.5UniSTS
WI-18736  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376109,688,157 - 109,688,289UniSTSGRCh37
Build 366109,794,850 - 109,794,982RGDNCBI36
Celera6110,434,745 - 110,434,877RGD
Cytogenetic Map6q21UniSTS
HuRef6107,254,344 - 107,254,476UniSTS
GeneMap99-GB4 RH Map6460.55UniSTS
Whitehead-RH Map6685.8UniSTS
NCBI RH Map61397.5UniSTS
GDB:335751  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map10q24.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map3q22.2UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8q22UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map3p21-p12UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map6p21.1-p12.2UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map13q12.13UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map6q22.1UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map10q24-q25UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map9q22.32UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4521
Count of miRNA genes:684
Interacting mature miRNAs:758
Transcripts:ENST00000275080, ENST00000310786, ENST00000324953, ENST00000368961, ENST00000413644, ENST00000415861, ENST00000499860, ENST00000504373, ENST00000506649, ENST00000512212, ENST00000512821
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 2
Medium 2439 2940 1726 624 1940 465 4356 2159 3676 418 1458 1613 175 1 1204 2788 6 2
Low 51 11 1 38 58 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_051926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001142401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001142402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001142403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001142404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF106518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF263279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF299340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF299341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF299342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF299343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK312357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL359711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM668503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM817924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM830140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D14043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC402684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC403839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EB388947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ200494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JC231890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000275080   ⟹   ENSP00000275080
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6109,366,518 - 109,382,444 (-)Ensembl
RefSeq Acc Id: ENST00000310786   ⟹   ENSP00000309376
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6109,366,514 - 109,382,467 (-)Ensembl
RefSeq Acc Id: ENST00000324953   ⟹   ENSP00000314177
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6109,366,518 - 109,382,444 (-)Ensembl
RefSeq Acc Id: ENST00000413644   ⟹   ENSP00000402237
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6109,366,514 - 109,382,457 (-)Ensembl
RefSeq Acc Id: ENST00000415861
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6109,366,514 - 109,372,869 (-)Ensembl
RefSeq Acc Id: ENST00000499860
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6109,367,279 - 109,380,516 (-)Ensembl
RefSeq Acc Id: ENST00000504373   ⟹   ENSP00000422999
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6109,366,514 - 109,381,739 (-)Ensembl
RefSeq Acc Id: ENST00000506649
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6109,368,684 - 109,381,901 (-)Ensembl
RefSeq Acc Id: ENST00000512212
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6109,375,887 - 109,382,411 (-)Ensembl
RefSeq Acc Id: ENST00000512821   ⟹   ENSP00000427546
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6109,367,821 - 109,382,410 (-)Ensembl
RefSeq Acc Id: NM_001142401   ⟹   NP_001135873
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386109,366,514 - 109,382,467 (-)NCBI
GRCh376109,687,717 - 109,703,762 (-)ENTREZGENE
HuRef6107,253,904 - 107,269,946 (-)ENTREZGENE
CHM1_16109,950,828 - 109,966,874 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001142402   ⟹   NP_001135874
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386109,366,514 - 109,382,467 (-)NCBI
GRCh376109,687,717 - 109,703,762 (-)ENTREZGENE
HuRef6107,253,904 - 107,269,946 (-)ENTREZGENE
CHM1_16109,950,828 - 109,966,874 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001142403   ⟹   NP_001135875
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386109,366,514 - 109,382,467 (-)NCBI
GRCh376109,687,717 - 109,703,762 (-)ENTREZGENE
HuRef6107,253,904 - 107,269,946 (-)ENTREZGENE
CHM1_16109,950,828 - 109,966,874 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001142404   ⟹   NP_001135876
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386109,366,514 - 109,382,467 (-)NCBI
GRCh376109,687,717 - 109,703,762 (-)ENTREZGENE
HuRef6107,253,904 - 107,269,946 (-)ENTREZGENE
CHM1_16109,950,828 - 109,966,874 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346500   ⟹   NP_001333429
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386109,366,514 - 109,381,739 (-)NCBI
Sequence:
RefSeq Acc Id: NM_006016   ⟹   NP_006007
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386109,366,514 - 109,382,467 (-)NCBI
GRCh376109,687,717 - 109,703,762 (-)ENTREZGENE
Build 366109,794,414 - 109,810,340 (-)NCBI Archive
HuRef6107,253,904 - 107,269,946 (-)ENTREZGENE
CHM1_16109,950,828 - 109,966,874 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001135873 (Get FASTA)   NCBI Sequence Viewer  
  NP_001135874 (Get FASTA)   NCBI Sequence Viewer  
  NP_001135875 (Get FASTA)   NCBI Sequence Viewer  
  NP_001135876 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333429 (Get FASTA)   NCBI Sequence Viewer  
  NP_006007 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC82473 (Get FASTA)   NCBI Sequence Viewer  
  AAF85965 (Get FASTA)   NCBI Sequence Viewer  
  AAG53903 (Get FASTA)   NCBI Sequence Viewer  
  AAG53904 (Get FASTA)   NCBI Sequence Viewer  
  AAG53905 (Get FASTA)   NCBI Sequence Viewer  
  AAG53906 (Get FASTA)   NCBI Sequence Viewer  
  AAG53907 (Get FASTA)   NCBI Sequence Viewer  
  AAG53908 (Get FASTA)   NCBI Sequence Viewer  
  AAH11522 (Get FASTA)   NCBI Sequence Viewer  
  ACO54891 (Get FASTA)   NCBI Sequence Viewer  
  BAA03130 (Get FASTA)   NCBI Sequence Viewer  
  BAG35275 (Get FASTA)   NCBI Sequence Viewer  
  BAG60847 (Get FASTA)   NCBI Sequence Viewer  
  BAG63164 (Get FASTA)   NCBI Sequence Viewer  
  BAG64553 (Get FASTA)   NCBI Sequence Viewer  
  BAH14279 (Get FASTA)   NCBI Sequence Viewer  
  CDM22287 (Get FASTA)   NCBI Sequence Viewer  
  EAW48348 (Get FASTA)   NCBI Sequence Viewer  
  EAW48349 (Get FASTA)   NCBI Sequence Viewer  
  EAW48350 (Get FASTA)   NCBI Sequence Viewer  
  EAW48351 (Get FASTA)   NCBI Sequence Viewer  
  EAW48352 (Get FASTA)   NCBI Sequence Viewer  
  EAW48353 (Get FASTA)   NCBI Sequence Viewer  
  EAW48354 (Get FASTA)   NCBI Sequence Viewer  
  EAW48355 (Get FASTA)   NCBI Sequence Viewer  
  Q04900 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001135873   ⟸   NM_001142401
- Peptide Label: isoform 2 precursor
- UniProtKB: Q04900 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001135874   ⟸   NM_001142402
- Peptide Label: isoform 3 precursor
- UniProtKB: Q04900 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001135876   ⟸   NM_001142404
- Peptide Label: isoform 5 precursor
- UniProtKB: Q04900 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001135875   ⟸   NM_001142403
- Peptide Label: isoform 4 precursor
- UniProtKB: Q04900 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_006007   ⟸   NM_006016
- Peptide Label: isoform 1 precursor
- UniProtKB: Q04900 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001333429   ⟸   NM_001346500
- Peptide Label: isoform 6
- UniProtKB: Q04900 (UniProtKB/Swiss-Prot),   D6R9B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000422999   ⟸   ENST00000504373
RefSeq Acc Id: ENSP00000402237   ⟸   ENST00000413644
RefSeq Acc Id: ENSP00000314177   ⟸   ENST00000324953
RefSeq Acc Id: ENSP00000309376   ⟸   ENST00000310786
RefSeq Acc Id: ENSP00000275080   ⟸   ENST00000275080
RefSeq Acc Id: ENSP00000427546   ⟸   ENST00000512821

Promoters
RGD ID:7208855
Promoter ID:EPDNEW_H10173
Type:initiation region
Name:CD164_1
Description:CD164 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh386109,382,411 - 109,382,471EPDNEW
RGD ID:6812925
Promoter ID:HG_ACW:69554
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:CD164.IAPR07,   CD164.JAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 366109,802,436 - 109,802,936 (-)MPROMDB
RGD ID:6812923
Promoter ID:HG_ACW:69555
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:CD164.EAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 366109,808,091 - 109,809,172 (-)MPROMDB
RGD ID:6803882
Promoter ID:HG_KWN:54599
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001142401,   NM_001142402,   NM_001142404,   NM_006016,   OTTHUMT00000041740,   OTTHUMT00000041741
Position:
Human AssemblyChrPosition (strand)Source
Build 366109,810,246 - 109,811,047 (-)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6q21-23.2(chr6:108944899-132067720)x1 copy number loss See cases [RCV000051196] Chr6:108944899..132067720 [GRCh38]
Chr6:109266102..132388860 [GRCh37]
Chr6:109372795..132430553 [NCBI36]
Chr6:6q21-23.2
pathogenic
GRCh38/hg38 6q16.3-21(chr6:102356502-111049879)x1 copy number loss See cases [RCV000134806] Chr6:102356502..111049879 [GRCh38]
Chr6:102804377..111371082 [GRCh37]
Chr6:102911070..111477775 [NCBI36]
Chr6:6q16.3-21
pathogenic
GRCh38/hg38 6q21-22.1(chr6:107370141-115827482)x1 copy number loss See cases [RCV000138006] Chr6:107370141..115827482 [GRCh38]
Chr6:107691345..116148646 [GRCh37]
Chr6:107798038..116255339 [NCBI36]
Chr6:6q21-22.1
pathogenic
GRCh38/hg38 6q13-24.1(chr6:74382807-142040500)x3 copy number gain See cases [RCV000139729] Chr6:74382807..142040500 [GRCh38]
Chr6:75092523..142361637 [GRCh37]
Chr6:75149243..142403330 [NCBI36]
Chr6:6q13-24.1
pathogenic
GRCh38/hg38 6q16.1-22.31(chr6:96609994-122161548)x1 copy number loss See cases [RCV000139465] Chr6:96609994..122161548 [GRCh38]
Chr6:97057870..122482694 [GRCh37]
Chr6:97164591..122524393 [NCBI36]
Chr6:6q16.1-22.31
pathogenic
GRCh38/hg38 6q21(chr6:107445281-110547907)x1 copy number loss See cases [RCV000141382] Chr6:107445281..110547907 [GRCh38]
Chr6:107766485..110869110 [GRCh37]
Chr6:107873178..110975803 [NCBI36]
Chr6:6q21
pathogenic
GRCh38/hg38 6q21-22.31(chr6:106503719-125781219)x1 copy number loss See cases [RCV000141587] Chr6:106503719..125781219 [GRCh38]
Chr6:106951594..126102365 [GRCh37]
Chr6:107058287..126144058 [NCBI36]
Chr6:6q21-22.31
pathogenic
GRCh38/hg38 6q16.3-21(chr6:103279465-113934239)x1 copy number loss See cases [RCV000142287] Chr6:103279465..113934239 [GRCh38]
Chr6:103727340..114255403 [GRCh37]
Chr6:103834033..114362096 [NCBI36]
Chr6:6q16.3-21
pathogenic
GRCh38/hg38 6q16.3-22.31(chr6:100054889-120488154)x1 copy number loss See cases [RCV000143227] Chr6:100054889..120488154 [GRCh38]
Chr6:100502765..120809300 [GRCh37]
Chr6:100609486..120850999 [NCBI36]
Chr6:6q16.3-22.31
pathogenic
NM_006016.6(CD164):c.574C>T (p.Arg192Ter) single nucleotide variant Deafness, autosomal dominant 66 [RCV000223938] Chr6:109368871 [GRCh38]
Chr6:109690074 [GRCh37]
Chr6:6q21
pathogenic
GRCh37/hg19 6q21(chr6:109564793-112223595)x1 copy number loss See cases [RCV000447293] Chr6:109564793..112223595 [GRCh37]
Chr6:6q21
uncertain significance
GRCh37/hg19 6q14.3-22.31(chr6:85988428-120548687)x1 copy number loss See cases [RCV000445666] Chr6:85988428..120548687 [GRCh37]
Chr6:6q14.3-22.31
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6q16.1-21(chr6:97384446-110247755)x1 copy number loss See cases [RCV000510703] Chr6:97384446..110247755 [GRCh37]
Chr6:6q16.1-21
pathogenic
NM_006016.6(CD164):c.-41C>G single nucleotide variant not specified [RCV000607386] Chr6:109382419 [GRCh38]
Chr6:109703622 [GRCh37]
Chr6:6q21
benign
NM_006016.6(CD164):c.194A>G (p.Asn65Ser) single nucleotide variant not specified [RCV000524061] Chr6:109379644 [GRCh38]
Chr6:109700847 [GRCh37]
Chr6:6q21
uncertain significance
NM_006016.6(CD164):c.37A>G (p.Thr13Ala) single nucleotide variant not specified [RCV000613017] Chr6:109382342 [GRCh38]
Chr6:109703545 [GRCh37]
Chr6:6q21
likely benign
NM_006016.6(CD164):c.575G>A (p.Arg192Gln) single nucleotide variant not specified [RCV000607519] Chr6:109368870 [GRCh38]
Chr6:109690073 [GRCh37]
Chr6:6q21
likely benign
NM_006016.6(CD164):c.402A>G (p.Thr134=) single nucleotide variant not provided [RCV000959619]|not specified [RCV000608249] Chr6:109370436 [GRCh38]
Chr6:109691639 [GRCh37]
Chr6:6q21
benign
NM_006016.6(CD164):c.209G>A (p.Cys70Tyr) single nucleotide variant not specified [RCV000599929] Chr6:109379629 [GRCh38]
Chr6:109700832 [GRCh37]
Chr6:6q21
likely benign
GRCh37/hg19 6q16.1-21(chr6:94202605-109878834)x1 copy number loss See cases [RCV000512470] Chr6:94202605..109878834 [GRCh37]
Chr6:6q16.1-21
pathogenic
GRCh37/hg19 6q16.1-22.1(chr6:95549951-116684929)x1 copy number loss not provided [RCV000682693] Chr6:95549951..116684929 [GRCh37]
Chr6:6q16.1-22.1
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
NM_006016.6(CD164):c.330C>T (p.Ser110=) single nucleotide variant not specified [RCV000825718] Chr6:109377901 [GRCh38]
Chr6:109699104 [GRCh37]
Chr6:6q21
likely benign
NM_006016.6(CD164):c.175+80C>T single nucleotide variant not provided [RCV000842856] Chr6:109382124 [GRCh38]
Chr6:109703327 [GRCh37]
Chr6:6q21
likely benign
NM_006016.6(CD164):c.427+58_427+59dup duplication not provided [RCV000842857] Chr6:109370351..109370352 [GRCh38]
Chr6:109691554..109691555 [GRCh37]
Chr6:6q21
likely benign
GRCh37/hg19 6q21(chr6:109564694-112232351)x1 copy number loss not provided [RCV001007557] Chr6:109564694..112232351 [GRCh37]
Chr6:6q21
uncertain significance
GRCh37/hg19 6q16.3-22.1(chr6:101296547-117004249)x3 copy number gain Microcephaly [RCV001251053] Chr6:101296547..117004249 [GRCh37]
Chr6:6q16.3-22.1
pathogenic
GRCh37/hg19 6q16.1-21(chr6:98949950-114533905)x1 copy number loss Deletion 6q16 q21 [RCV001263224] Chr6:98949950..114533905 [GRCh37]
Chr6:6q16.1-21
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1632 AgrOrtholog
COSMIC CD164 COSMIC
Ensembl Genes ENSG00000135535 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000275080 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000309376 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000314177 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000402237 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000422999 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000427546 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000275080 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000310786 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000324953 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000413644 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000504373 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000512821 ENTREZGENE, UniProtKB/Swiss-Prot
GTEx ENSG00000135535 GTEx
HGNC ID HGNC:1632 ENTREZGENE
Human Proteome Map CD164 Human Proteome Map
InterPro CD164_MGC24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:8763 UniProtKB/Swiss-Prot
NCBI Gene 8763 ENTREZGENE
OMIM 603356 OMIM
  616969 OMIM
PANTHER PTHR11337 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MGC-24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26191 PharmGKB
PRINTS CD164ANTIGEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Hs.520313 ENTREZGENE
UniProt D6R9B4 ENTREZGENE, UniProtKB/TrEMBL
  MUC24_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q5JSU3_HUMAN UniProtKB/TrEMBL
UniProt Secondary B4DQ85 UniProtKB/Swiss-Prot
  E1P5E7 UniProtKB/Swiss-Prot
  E1P5E8 UniProtKB/Swiss-Prot
  E1P5E9 UniProtKB/Swiss-Prot
  K9J966 UniProtKB/TrEMBL
  O95413 UniProtKB/Swiss-Prot
  Q5JSU6 UniProtKB/Swiss-Prot
  Q9BPV0 UniProtKB/Swiss-Prot
  Q9NR26 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-12 CD164  CD164 molecule  CD164  CD164 molecule, sialomucin  Symbol and/or name change 5135510 APPROVED