CD164 (CD164 molecule) - Rat Genome Database

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Gene: CD164 (CD164 molecule) Canis lupus familiaris
Analyze
Symbol: CD164
Name: CD164 molecule
RGD ID: 12140597
Description: INVOLVED IN cell adhesion (ortholog); heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 66 (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); genetic disease (ortholog); FOUND IN endosome (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sialomucin core protein 24
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11266,295,444 - 66,309,691 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1266,297,248 - 66,310,186 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1266,115,241 - 66,129,486 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01267,178,245 - 67,192,476 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1267,175,654 - 67,192,972 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11266,528,513 - 66,542,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01266,377,373 - 66,391,557 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01266,649,181 - 66,663,417 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endosome  (IEA,ISO)
lysosome  (IEA)
membrane  (IEA)
plasma membrane  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22855528   PMID:30032202  


Genomics

Comparative Map Data
CD164
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11266,295,444 - 66,309,691 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1266,297,248 - 66,310,186 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1266,115,241 - 66,129,486 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01267,178,245 - 67,192,476 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1267,175,654 - 67,192,972 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11266,528,513 - 66,542,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01266,377,373 - 66,391,557 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01266,649,181 - 66,663,417 (-)NCBIUU_Cfam_GSD_1.0
CD164
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386109,366,514 - 109,382,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6109,366,514 - 109,382,467 (-)EnsemblGRCh38hg38GRCh38
GRCh376109,687,717 - 109,703,670 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,794,414 - 109,810,340 (-)NCBINCBI36Build 36hg18NCBI36
Build 346109,794,415 - 109,810,340NCBI
Celera6110,434,305 - 110,450,350 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6107,253,904 - 107,269,946 (-)NCBIHuRef
CHM1_16109,950,828 - 109,966,874 (-)NCBICHM1_1
T2T-CHM13v2.06110,544,551 - 110,560,504 (-)NCBIT2T-CHM13v2.0
Cd164
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391041,395,496 - 41,407,038 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1041,395,410 - 41,407,044 (+)EnsemblGRCm39 Ensembl
GRCm381041,519,500 - 41,531,042 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1041,519,414 - 41,531,048 (+)EnsemblGRCm38mm10GRCm38
MGSCv371041,239,306 - 41,250,848 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361041,207,915 - 41,219,457 (+)NCBIMGSCv36mm8
Celera1042,405,747 - 42,417,290 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.46NCBI
Cd164
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,606,439 - 46,618,015 (+)NCBIGRCr8
mRatBN7.22045,024,051 - 45,035,628 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2045,023,973 - 45,035,634 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2046,741,543 - 46,753,119 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02046,391,718 - 46,403,294 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02047,098,205 - 47,109,771 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02046,250,418 - 46,261,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,250,363 - 46,261,994 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02047,942,773 - 47,954,349 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42045,486,590 - 45,498,166 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12045,509,600 - 45,521,176 (+)NCBI
Celera2054,918,183 - 54,929,760 (-)NCBICelera
Cytogenetic Map20q12NCBI
Cd164
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541134,423,727 - 34,439,295 (-)NCBIChiLan1.0ChiLan1.0
CD164
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25129,375,156 - 129,394,682 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16127,266,493 - 127,284,189 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06107,169,540 - 107,185,815 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16111,218,303 - 111,234,595 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6111,218,303 - 111,234,203 (-)Ensemblpanpan1.1panPan2
Cd164
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946101,235,851 - 101,250,004 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365645,510,718 - 5,522,637 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD164
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,441,575 - 75,458,145 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1175,441,568 - 75,458,140 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,719,539 - 84,735,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD164
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11364,482,079 - 64,498,540 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1364,481,790 - 64,499,135 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604036,773,505 - 36,790,192 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd164
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624916643,145 - 656,266 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD164
163 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038492581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038554894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038618770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038684331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_532256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001317415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001317416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005334413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005334414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005368119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005368120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005402459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005402460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005435888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005435889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000043772   ⟹   ENSCAFP00000036753
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1266,297,789 - 66,309,649 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000063161   ⟹   ENSCAFP00000053920
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1266,297,789 - 66,310,186 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000065796   ⟹   ENSCAFP00000044441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1266,297,868 - 66,309,682 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000089592   ⟹   ENSCAFP00000064653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1266,297,248 - 66,309,682 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019127   ⟹   ENSCAFP00845014941
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1267,175,654 - 67,192,972 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019148   ⟹   ENSCAFP00845014958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1267,175,654 - 67,192,972 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019181   ⟹   ENSCAFP00845014983
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1267,180,049 - 67,192,468 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019207   ⟹   ENSCAFP00845015005
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1267,180,669 - 67,192,468 (-)Ensembl
RefSeq Acc Id: XM_038492581   ⟹   XP_038348509
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11266,528,513 - 66,542,710 (-)NCBI
RefSeq Acc Id: XM_038554894   ⟹   XP_038410822
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01266,649,181 - 66,663,417 (-)NCBI
RefSeq Acc Id: XM_038618770   ⟹   XP_038474698
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01266,377,373 - 66,391,557 (-)NCBI
RefSeq Acc Id: XM_038684331   ⟹   XP_038540259
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01267,178,245 - 67,192,476 (-)NCBI
RefSeq Acc Id: XM_532256   ⟹   XP_532256
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11266,295,444 - 66,309,691 (-)NCBI
Dog10K_Boxer_Tasha1266,115,241 - 66,129,486 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001317415
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11266,297,840 - 66,309,055 (-)NCBI
Dog10K_Boxer_Tasha1266,117,636 - 66,128,852 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001317416
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11266,297,664 - 66,309,099 (-)NCBI
Dog10K_Boxer_Tasha1266,117,460 - 66,128,896 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005334413
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11266,530,904 - 66,542,075 (-)NCBI
RefSeq Acc Id: XR_005334414
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11266,528,513 - 66,542,119 (-)NCBI
RefSeq Acc Id: XR_005368119
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01266,651,576 - 66,662,785 (-)NCBI
RefSeq Acc Id: XR_005368120
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01266,651,400 - 66,662,829 (-)NCBI
RefSeq Acc Id: XR_005402459
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01266,379,763 - 66,390,922 (-)NCBI
RefSeq Acc Id: XR_005402460
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01266,379,587 - 66,390,966 (-)NCBI
RefSeq Acc Id: XR_005435888
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01267,180,641 - 67,191,844 (-)NCBI
RefSeq Acc Id: XR_005435889
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01267,180,465 - 67,191,888 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_532256   ⟸   XM_532256
- UniProtKB: A0A8C0MRV2 (UniProtKB/TrEMBL),   A0A8C0MST9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000036753   ⟸   ENSCAFT00000043772
RefSeq Acc Id: ENSCAFP00000053920   ⟸   ENSCAFT00000063161
RefSeq Acc Id: ENSCAFP00000064653   ⟸   ENSCAFT00000089592
RefSeq Acc Id: ENSCAFP00000044441   ⟸   ENSCAFT00000065796
RefSeq Acc Id: XP_038348509   ⟸   XM_038492581
RefSeq Acc Id: XP_038474698   ⟸   XM_038618770
RefSeq Acc Id: XP_038540259   ⟸   XM_038684331
- UniProtKB: A0A8C0MRV2 (UniProtKB/TrEMBL),   A0A8C0MST9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038410822   ⟸   XM_038554894
- UniProtKB: A0A8C0MRV2 (UniProtKB/TrEMBL),   A0A8C0MST9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845014941   ⟸   ENSCAFT00845019127
RefSeq Acc Id: ENSCAFP00845014983   ⟸   ENSCAFT00845019181
RefSeq Acc Id: ENSCAFP00845015005   ⟸   ENSCAFT00845019207
RefSeq Acc Id: ENSCAFP00845014958   ⟸   ENSCAFT00845019148

Promoters
RGD ID:13685529
Promoter ID:EPDNEW_C3596
Type:initiation region
Name:CD164_1
Description:CD164 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11266,309,681 - 66,309,741EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029011 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030008625 UniProtKB/TrEMBL
  ENSCAFG00845010838 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000063161.2 UniProtKB/TrEMBL
  ENSCAFT00000065796.2 UniProtKB/TrEMBL
  ENSCAFT00000089592.2 UniProtKB/TrEMBL
  ENSCAFT00000107110.1 UniProtKB/TrEMBL
  ENSCAFT00030015856.1 UniProtKB/TrEMBL
  ENSCAFT00030015888.1 UniProtKB/TrEMBL
  ENSCAFT00030015944.1 UniProtKB/TrEMBL
  ENSCAFT00030015997.1 UniProtKB/TrEMBL
  ENSCAFT00845019127.1 UniProtKB/TrEMBL
  ENSCAFT00845019148.1 UniProtKB/TrEMBL
  ENSCAFT00845019181.1 UniProtKB/TrEMBL
  ENSCAFT00845019207 ENTREZGENE
  ENSCAFT00845019207.1 UniProtKB/TrEMBL
InterPro CD164_MGC24 UniProtKB/TrEMBL
KEGG Report cfa:475020 UniProtKB/TrEMBL
NCBI Gene CD164 ENTREZGENE
PANTHER PTHR11337 UniProtKB/TrEMBL
  SIALOMUCIN CORE PROTEIN 24 UniProtKB/TrEMBL
Pfam MGC-24 UniProtKB/TrEMBL
PRINTS CD164ANTIGEN UniProtKB/TrEMBL
UniProt A0A8C0MM38_CANLF UniProtKB/TrEMBL
  A0A8C0MRQ1_CANLF UniProtKB/TrEMBL
  A0A8C0MRV2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MST9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N5Z2_CANLF UniProtKB/TrEMBL
  A0A8I3NHA5_CANLF UniProtKB/TrEMBL
  A0A8I3NIK8_CANLF UniProtKB/TrEMBL
  A0A8I3RW38_CANLF UniProtKB/TrEMBL
  A0A8P0PIJ6_CANLF UniProtKB/TrEMBL
  A0A8P0T6B9_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38932 ENTREZGENE