CST11 (cystatin 11) - Rat Genome Database

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Gene: CST11 (cystatin 11) Sus scrofa
Analyze
Symbol: CST11
Name: cystatin 11
RGD ID: 14236768
Description: ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (inferred); peptidase inhibitor activity (inferred); INVOLVED IN defense response to Gram-negative bacterium (inferred); killing of cells of another organism (inferred); FOUND IN cytoplasm (inferred); extracellular region (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cystatin-11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,414,051 - 30,417,127 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11730,415,161 - 30,416,984 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,503,160 - 34,505,987 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
extracellular region  (IEA)
nucleus  (IBA,IEA)
sperm flagellum  (IBA,IEA)
sperm head  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:19664223   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CST11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,414,051 - 30,417,127 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11730,415,161 - 30,416,984 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,503,160 - 34,505,987 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CST11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382023,450,412 - 23,452,876 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2023,450,403 - 23,453,210 (-)Ensemblhg38GRCh38
GRCh372023,431,049 - 23,433,513 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362023,379,041 - 23,381,482 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342023,379,040 - 23,381,482NCBI
Celera2023,504,421 - 23,506,862 (-)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2023,392,703 - 23,395,144 (-)NCBIHuRef
CHM1_12023,431,037 - 23,433,478 (-)NCBICHM1_1
T2T-CHM13v2.02023,509,944 - 23,512,411 (-)NCBIT2T-CHM13v2.0
Cst11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392148,610,538 - 148,613,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2148,610,529 - 148,613,417 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382148,768,618 - 148,771,497 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2148,768,609 - 148,771,497 (-)Ensemblmm10GRCm38
MGSCv372148,594,354 - 148,597,233 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362148,460,059 - 148,462,938 (-)NCBIMGSCv36mm8
Celera2150,030,906 - 150,034,699 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.54NCBI
Cst11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83156,664,551 - 156,667,275 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3156,664,551 - 156,667,275 (-)EnsemblGRCr8
mRatBN7.23136,211,414 - 136,214,138 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3136,211,414 - 136,214,138 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3140,163,405 - 140,165,998 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03148,747,551 - 148,750,144 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03146,437,032 - 146,439,756 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd3154,770,708 - 154,773,301 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive3161,727,721 - 161,730,445 (-)NCBILyon_Normotensive
Lyon_Hypertensive3153,587,731 - 153,590,455 (-)NCBILyon_Hypertensive
F344_StmMcwi3134,904,841 - 134,907,434 (-)NCBIF344_StmMcwi
Rnor_6.03143,096,056 - 143,098,780 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3143,096,056 - 143,098,780 (-)Ensemblrn6Rnor6.0
Rnor_5.03149,504,896 - 149,507,620 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43137,524,412 - 137,527,136 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3135,052,841 - 135,055,541 (-)NCBICelera
RGSC_v3.13137,429,984 - 137,432,709 (-)NCBI
Cytogenetic Map3q41NCBI
Cst11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541530,445,556 - 30,453,439 (-)NCBIChiLan1.0ChiLan1.0
CST11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22124,317,163 - 24,319,887 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12024,313,996 - 24,316,720 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02023,385,639 - 23,388,363 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12023,736,631 - 23,739,084 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2023,736,631 - 23,739,084 (-)EnsemblpanPan2panpan1.1
CST11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.124181,410 - 184,213 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl24180,692 - 184,323 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha24203,332 - 205,991 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.024573,867 - 576,594 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl24573,905 - 576,594 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.124176,259 - 178,909 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.024275,596 - 278,262 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024559,406 - 562,092 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cst11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640148,695,442 - 148,699,181 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366202,115,924 - 2,119,639 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366202,115,927 - 2,119,683 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC119622293
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660787,271,760 - 7,274,744 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cst11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474123,104,474 - 23,106,333 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cst11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15128,298,073 - 128,300,741 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in CST11
53 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSSCT00000007794   ⟹   ENSSSCP00000007585
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1730,414,051 - 30,417,127 (-)Ensembl
RefSeq Acc Id: XM_021077681   ⟹   XP_020933340
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11730,415,161 - 30,416,984 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020933340   ⟸   XM_021077681
- UniProtKB: A0A4X1V440 (UniProtKB/TrEMBL),   F1SAT2 (UniProtKB/TrEMBL),   A0A8D1M2A6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000007585   ⟸   ENSSSCT00000007794
Protein Domains
Cystatin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007122 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00015024339 UniProtKB/TrEMBL
  ENSSSCG00025059228 UniProtKB/TrEMBL
  ENSSSCG00030045690 UniProtKB/TrEMBL
  ENSSSCG00035050646 UniProtKB/TrEMBL
  ENSSSCG00040059783 UniProtKB/TrEMBL
  ENSSSCG00050030215 UniProtKB/TrEMBL
  ENSSSCG00055013343 UniProtKB/TrEMBL
  ENSSSCG00060057331 UniProtKB/TrEMBL
  ENSSSCG00065046584 UniProtKB/TrEMBL
  ENSSSCG00070021740 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007794.4 UniProtKB/TrEMBL
  ENSSSCT00015032269.1 UniProtKB/TrEMBL
  ENSSSCT00025081082.1 UniProtKB/TrEMBL
  ENSSSCT00030063743.1 UniProtKB/TrEMBL
  ENSSSCT00035067477.1 UniProtKB/TrEMBL
  ENSSSCT00040081266.1 UniProtKB/TrEMBL
  ENSSSCT00050040607.1 UniProtKB/TrEMBL
  ENSSSCT00055026276.1 UniProtKB/TrEMBL
  ENSSSCT00060078111.1 UniProtKB/TrEMBL
  ENSSSCT00065063743.1 UniProtKB/TrEMBL
  ENSSSCT00070043200.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
InterPro CST11 UniProtKB/TrEMBL
  Cystatin_dom UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
NCBI Gene CST11 ENTREZGENE
PANTHER CYSTATIN-11 UniProtKB/TrEMBL
  PTHR47886 UniProtKB/TrEMBL
Pfam Cystatin UniProtKB/TrEMBL
SMART SM00043 UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt A0A4X1V440 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1M2A6 ENTREZGENE, UniProtKB/TrEMBL
  C7C1I5_PIG UniProtKB/TrEMBL
  F1SAT2 ENTREZGENE
UniProt Secondary F1SAT2 UniProtKB/TrEMBL