HRNR (hornerin) - Rat Genome Database

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Pathways
Gene: HRNR (hornerin) Sus scrofa
Analyze
Symbol: HRNR
Name: hornerin
RGD ID: 14156969
Description: INVOLVED IN cell envelope organization (ortholog); establishment of skin barrier (ortholog); hematopoietic progenitor cell differentiation (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); keratohyalin granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1496,983,596 - 96,992,606 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HRNR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1496,983,596 - 96,992,606 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HRNR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381152,212,076 - 152,224,193 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1152,212,076 - 152,224,193 (-)Ensemblhg38GRCh38
GRCh371152,184,552 - 152,196,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361150,451,182 - 150,463,293 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1125,299,240 - 125,308,530 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1123,561,504 - 123,570,799 (-)NCBIHuRef
CHM1_11153,579,878 - 153,592,041 (-)NCBICHM1_1
Hrnr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39393,227,056 - 93,240,879 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl393,227,056 - 93,240,877 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38393,319,749 - 93,333,572 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl393,319,749 - 93,333,570 (+)Ensemblmm10GRCm38
MGSCv37393,123,671 - 93,137,494 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36393,405,958 - 93,418,975 (+)NCBIMGSCv36mm8
Celera393,772,386 - 93,778,017 (-)NCBICelera
Celera395,066,507 - 95,070,752 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.39NCBI
Hrnr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82181,650,772 - 181,663,633 (+)NCBIGRCr8GRCr8GRCr8
Rnor_6.02193,626,283 - 193,639,848 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2193,627,243 - 193,634,181 (+)Ensemblrn6Rnor6.0
Rnor_5.02211,227,940 - 211,239,721 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42186,393,623 - 186,405,265 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2171,314,820 - 171,318,755 (-)NCBICelera
RGSC_v3.12186,342,966 - 186,355,371 (+)NCBI
Cytogenetic Map2q34NCBI
HRNR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2197,599,034 - 97,614,267 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,350,236 - 97,362,876 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01127,570,653 - 127,583,285 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LOC119863999
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.01762,211,458 - 62,220,185 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11761,039,431 - 61,048,151 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01761,126,410 - 61,133,175 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01761,854,570 - 61,863,299 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
HRNR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12011,439,492 - 11,442,174 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603810,984,280 - 10,996,449 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in HRNR
527 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021090820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021090820   ⟹   XP_020946479
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1496,983,596 - 96,992,606 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020946479 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020946479   ⟸   XM_021090820
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene HRNR ENTREZGENE