SNX29 (sorting nexin 29) - Rat Genome Database

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Pathways
Gene: SNX29 (sorting nexin 29) Sus scrofa
Analyze
Symbol: SNX29
Name: sorting nexin 29
RGD ID: 14103666
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin-29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl330,584,951 - 31,133,317 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1330,584,707 - 31,133,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2331,471,464 - 31,614,167 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SNX29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl330,584,951 - 31,133,317 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1330,584,707 - 31,133,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2331,471,464 - 31,614,167 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381611,976,734 - 12,574,287 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1611,976,734 - 12,574,287 (+)Ensemblhg38GRCh38
GRCh371612,070,591 - 12,668,144 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361612,053,556 - 12,575,647 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341611,978,102 - 12,054,642NCBI
Celera1612,320,697 - 12,843,213 (+)NCBICelera
Cytogenetic Map16p13.13-p13.12NCBI
HuRef1611,986,415 - 12,585,152 (+)NCBIHuRef
CHM1_11612,070,651 - 12,668,086 (+)NCBICHM1_1
T2T-CHM13v2.01612,012,847 - 12,611,331 (+)NCBIT2T-CHM13v2.0
Snx29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391611,140,719 - 11,576,959 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1611,140,772 - 11,573,336 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381611,322,861 - 11,759,095 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1611,322,908 - 11,755,472 (+)Ensemblmm10GRCm38
MGSCv371611,405,741 - 11,755,565 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361611,319,226 - 11,669,050 (+)NCBIMGSCv36mm8
Celera1612,036,249 - 12,386,189 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map166.46NCBI
Snx29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8104,391,866 - 4,805,682 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl104,394,544 - 4,813,772 (-)EnsemblGRCr8
mRatBN7.2103,884,880 - 4,298,699 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl103,888,301 - 4,298,655 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx108,584,989 - 8,995,316 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0108,407,069 - 8,516,409 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0103,747,428 - 4,154,657 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0103,838,444 - 4,249,741 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl103,840,622 - 4,249,739 (-)Ensemblrn6Rnor6.0
Rnor_5.0102,706,984 - 3,115,798 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4103,765,525 - 4,114,661 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera102,920,618 - 3,322,387 (-)NCBICelera
Cytogenetic Map10q11NCBI
Snx29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554426,099,356 - 6,607,285 (-)Ensembl
ChiLan1.0NW_0049554426,082,362 - 6,607,440 (-)NCBIChiLan1.0ChiLan1.0
SNX29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21812,522,863 - 13,116,752 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11616,293,348 - 16,887,544 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01610,914,851 - 11,508,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11612,406,883 - 12,936,191 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1612,366,908 - 12,930,480 (+)EnsemblpanPan2panpan1.1
SNX29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1630,314,165 - 30,822,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl630,318,366 - 30,822,230 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha631,683,735 - 32,218,323 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0630,486,660 - 31,015,641 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl630,489,648 - 31,015,633 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1630,301,320 - 30,829,702 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0630,176,220 - 30,704,361 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0630,598,943 - 31,127,625 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Snx29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,835,111 - 113,190,458 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501933,066 - 1,285,235 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936501933,000 - 1,288,318 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1511,448,178 - 12,078,346 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl511,448,195 - 12,031,613 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606818,033,408 - 18,685,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247825,787,419 - 6,326,363 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247825,788,325 - 6,326,476 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Snx29
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1910,554,704 - 10,959,769 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in SNX29
18726 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000044277   ⟹   ENSSSCP00000032751
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl330,584,912 - 31,133,303 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000053359   ⟹   ENSSSCP00000033665
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl330,584,951 - 31,133,317 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000055203   ⟹   ENSSSCP00000052355
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl330,584,951 - 31,133,317 (-)Ensembl
RefSeq Acc Id: XM_021088055   ⟹   XP_020943714
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1330,584,891 - 31,133,392 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021088056   ⟹   XP_020943715
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1330,584,995 - 31,133,349 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021088057   ⟹   XP_020943716
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1330,584,995 - 31,113,087 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021088058   ⟹   XP_020943717
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1330,584,707 - 31,072,525 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021088059   ⟹   XP_020943718
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1330,584,707 - 31,057,536 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021088060   ⟹   XP_020943719
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1330,584,707 - 31,133,361 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020943719   ⟸   XM_021088060
- Peptide Label: isoform X3
- UniProtKB: A0A8D1QP73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943717   ⟸   XM_021088058
- Peptide Label: isoform X3
- UniProtKB: A0A8D1QP73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943718   ⟸   XM_021088059
- Peptide Label: isoform X4
- UniProtKB: A0A8D1QP73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943714   ⟸   XM_021088055
- Peptide Label: isoform X1
- UniProtKB: A0A287B757 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943715   ⟸   XM_021088056
- Peptide Label: isoform X2
- UniProtKB: A0A4X1VQY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943716   ⟸   XM_021088057
- Peptide Label: isoform X2
- UniProtKB: A0A4X1VQY9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000032751   ⟸   ENSSSCT00000044277
Ensembl Acc Id: ENSSSCP00000052355   ⟸   ENSSSCT00000055203
Ensembl Acc Id: ENSSSCP00000033665   ⟸   ENSSSCT00000053359
Protein Domains
PX   RUN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037232 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025019817 UniProtKB/TrEMBL
  ENSSSCG00030034499 UniProtKB/TrEMBL
  ENSSSCG00035046336 UniProtKB/TrEMBL
  ENSSSCG00040014504 UniProtKB/TrEMBL
  ENSSSCG00045009701 UniProtKB/TrEMBL
  ENSSSCG00050077910 UniProtKB/TrEMBL
  ENSSSCG00055014419 UniProtKB/TrEMBL
  ENSSSCG00065074204 UniProtKB/TrEMBL
  ENSSSCG00070025738 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000055203 ENTREZGENE
  ENSSSCT00000055203.2 UniProtKB/TrEMBL
  ENSSSCT00025026881.1 UniProtKB/TrEMBL
  ENSSSCT00025026910.1 UniProtKB/TrEMBL
  ENSSSCT00030047746.1 UniProtKB/TrEMBL
  ENSSSCT00030047776.1 UniProtKB/TrEMBL
  ENSSSCT00035061626.1 UniProtKB/TrEMBL
  ENSSSCT00035061634.1 UniProtKB/TrEMBL
  ENSSSCT00040019416.1 UniProtKB/TrEMBL
  ENSSSCT00040019434.1 UniProtKB/TrEMBL
  ENSSSCT00045016448.1 UniProtKB/TrEMBL
  ENSSSCT00045016523.1 UniProtKB/TrEMBL
  ENSSSCT00050107238.1 UniProtKB/TrEMBL
  ENSSSCT00050107251.1 UniProtKB/TrEMBL
  ENSSSCT00055028439.1 UniProtKB/TrEMBL
  ENSSSCT00055028541.1 UniProtKB/TrEMBL
  ENSSSCT00065102199.1 UniProtKB/TrEMBL
  ENSSSCT00065102206.1 UniProtKB/TrEMBL
  ENSSSCT00070051454.1 UniProtKB/TrEMBL
  ENSSSCT00070051457.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.900 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro Phox UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  Run_dom UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/TrEMBL
  RUN_SNX29 UniProtKB/TrEMBL
  SNX29_PX UniProtKB/TrEMBL
NCBI Gene SNX29 ENTREZGENE
PANTHER SORTING NEXIN-29 UniProtKB/TrEMBL
  SORTING NEXIN-29-RELATED UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
SMART RUN UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF140741 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A287B757 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VJ68_PIG UniProtKB/TrEMBL
  A0A4X1VQY9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R6A0_PIG UniProtKB/TrEMBL
  A0A8D0REM1_PIG UniProtKB/TrEMBL
  A0A8D0WI23_PIG UniProtKB/TrEMBL
  A0A8D1A0T0_PIG UniProtKB/TrEMBL
  A0A8D1C6I8_PIG UniProtKB/TrEMBL
  A0A8D1DK76_PIG UniProtKB/TrEMBL
  A0A8D1KTA3_PIG UniProtKB/TrEMBL
  A0A8D1KTX3_PIG UniProtKB/TrEMBL
  A0A8D1P475_PIG UniProtKB/TrEMBL
  A0A8D1P6D0_PIG UniProtKB/TrEMBL
  A0A8D1QP73 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2A923_PIG UniProtKB/TrEMBL
  A0A8D2CHM4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98331 ENTREZGENE