SLC22A11 (solute carrier family 22 member 11) - Rat Genome Database

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Gene: SLC22A11 (solute carrier family 22 member 11) Sus scrofa
Analyze
Symbol: SLC22A11
Name: solute carrier family 22 member 11
RGD ID: 14055770
Description: ENCODES a protein that exhibits prostaglandin transmembrane transporter activity (inferred); secondary active transmembrane transporter activity (inferred); solute:inorganic anion antiporter activity (inferred); INVOLVED IN organic anion transport (inferred); prostaglandin transport (inferred); transmembrane transport (inferred); FOUND IN apical plasma membrane (inferred); endomembrane system (inferred); external side of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,590,391 - 7,603,116 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.127,590,391 - 7,603,567 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,777,940 - 6,792,239 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC22A11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,590,391 - 7,603,116 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.127,590,391 - 7,603,567 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,777,940 - 6,792,239 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,555,941 - 64,572,875 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,555,690 - 64,572,875 (+)Ensemblhg38GRCh38
GRCh371164,323,413 - 64,340,347 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,079,674 - 64,095,575 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341164,079,673 - 64,095,574NCBI
Celera1161,649,063 - 61,664,964 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,650,623 - 60,666,535 (+)NCBIHuRef
CHM1_11164,206,245 - 64,222,147 (+)NCBICHM1_1
T2T-CHM13v2.01164,548,682 - 64,565,616 (+)NCBIT2T-CHM13v2.0
Slc22a11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,556,098 - 20,596,012 (-)Ensembl
ChiLan1.0NW_00495542220,582,736 - 20,595,872 (-)NCBIChiLan1.0ChiLan1.0
SLC22A11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,780,073 - 65,797,005 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,825,467 - 66,842,389 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,909,374 - 59,925,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,254,038 - 63,271,283 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,254,038 - 63,271,283 (+)EnsemblpanPan2panpan1.1
SLC22A11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,567,074 - 52,583,574 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,568,396 - 52,583,844 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1851,174,371 - 51,190,608 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01853,612,674 - 53,628,901 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,613,994 - 53,720,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,703,116 - 52,719,308 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,289,380 - 52,305,619 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,073,474 - 53,089,705 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc22a11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,271,862 - 8,297,300 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365994,714,239 - 4,726,680 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,664,015 - 9,680,559 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,662,327 - 9,679,813 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038107,055,465 - 107,071,412 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,797,766 - 21,811,215 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476721,797,264 - 21,810,904 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC22A11
819 total Variants

Expression

RNA-SEQ Expression

mesenchyme
renal system
2 2

Sequence


Ensembl Acc Id: ENSSSCT00000029221   ⟹   ENSSSCP00000024675
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,590,391 - 7,603,116 (-)Ensembl
RefSeq Acc Id: XM_021083780   ⟹   XP_020939439
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.127,590,391 - 7,603,567 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020939439 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000024675
  ENSSSCP00000024675.3
RefSeq Acc Id: XP_020939439   ⟸   XM_021083780
- UniProtKB: I3LKR0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000024675   ⟸   ENSSSCT00000029221


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000020831 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029221 ENTREZGENE
  ENSSSCT00000029221.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene SLC22A11 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt I3LKR0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92971 ENTREZGENE