SLC22A11 (solute carrier family 22 member 11) - Rat Genome Database

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Gene: SLC22A11 (solute carrier family 22 member 11) Chlorocebus sabaeus
Analyze
Symbol: SLC22A11
Name: solute carrier family 22 member 11
RGD ID: 18642368
Description: ENCODES a protein that exhibits organic anion transmembrane transporter activity (inferred); prostaglandin transmembrane transporter activity (inferred); sodium-independent organic anion transmembrane transporter activity (inferred); INVOLVED IN inorganic anion transport (inferred); organic anion transport (inferred); prostaglandin transport (inferred); ASSOCIATED WITH high grade glioma (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN apical plasma membrane (inferred); external side of plasma membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,664,015 - 9,680,559 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,662,327 - 9,679,813 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,055,465 - 107,071,412 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC22A11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,664,015 - 9,680,559 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,662,327 - 9,679,813 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,055,465 - 107,071,412 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC22A11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,555,941 - 64,572,875 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,555,690 - 64,572,875 (+)EnsemblGRCh38hg38GRCh38
GRCh371164,323,413 - 64,340,347 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,079,674 - 64,095,575 (+)NCBINCBI36Build 36hg18NCBI36
Build 341164,079,673 - 64,095,574NCBI
Celera1161,649,063 - 61,664,964 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,650,623 - 60,666,535 (+)NCBIHuRef
CHM1_11164,206,245 - 64,222,147 (+)NCBICHM1_1
T2T-CHM13v2.01164,548,682 - 64,565,616 (+)NCBIT2T-CHM13v2.0
Slc22a11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,556,098 - 20,596,012 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,582,736 - 20,595,872 (-)NCBIChiLan1.0ChiLan1.0
SLC22A11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,780,073 - 65,797,005 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,825,467 - 66,842,389 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,909,374 - 59,925,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,254,038 - 63,271,283 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,254,038 - 63,271,283 (+)Ensemblpanpan1.1panPan2
SLC22A11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,567,074 - 52,583,574 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,568,396 - 52,583,844 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,174,371 - 51,190,608 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,612,674 - 53,628,901 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,613,994 - 53,720,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,703,116 - 52,719,308 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,289,380 - 52,305,619 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,073,474 - 53,089,705 (-)NCBIUU_Cfam_GSD_1.0
Slc22a11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,271,862 - 8,297,300 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365994,714,239 - 4,726,680 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,590,391 - 7,603,116 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,590,391 - 7,603,567 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,777,940 - 6,792,239 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Slc22a11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,797,766 - 21,811,215 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,797,264 - 21,810,904 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
9 7 17 20 20 6 4

Sequence


Ensembl Acc Id: ENSCSAT00000005274   ⟹   ENSCSAP00000003497
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl19,662,327 - 9,679,813 (-)Ensembl
RefSeq Acc Id: XM_007993799   ⟹   XP_007991990
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.119,664,015 - 9,680,559 (-)NCBI
Vero_WHO_p1.0NW_023666038107,055,465 - 107,071,412 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007991990 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003497
  ENSCSAP00000003497.1
RefSeq Acc Id: XP_007991990   ⟸   XM_007993799
- UniProtKB: A0A0D9R4F8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000003497   ⟸   ENSCSAT00000005274


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007227 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005274.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene SLC22A11 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 22 MEMBER 11 UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A0D9R4F8 ENTREZGENE, UniProtKB/TrEMBL