SLC22A11 (solute carrier family 22 member 11) - Rat Genome Database

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Gene: SLC22A11 (solute carrier family 22 member 11) Canis lupus familiaris
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Symbol: SLC22A11
Name: solute carrier family 22 member 11
RGD ID: 12372959
Description: ENCODES a protein that exhibits organic anion transmembrane transporter activity (inferred); prostaglandin transmembrane transporter activity (inferred); sodium-independent organic anion transmembrane transporter activity (inferred); INVOLVED IN inorganic anion transport (inferred); organic anion transport (inferred); prostaglandin transport (inferred); ASSOCIATED WITH genetic disease (ortholog); high grade glioma (ortholog); intellectual disability (ortholog); FOUND IN apical plasma membrane (inferred); external side of plasma membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 22 (organic anion/cation transporter), member 11
RGD Orthologs
Human
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,567,074 - 52,583,574 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,568,396 - 52,583,844 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,174,371 - 51,190,608 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,612,674 - 53,628,901 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,613,994 - 53,720,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,703,116 - 52,719,308 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,289,380 - 52,305,619 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,073,474 - 53,089,705 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC22A11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,567,074 - 52,583,574 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,568,396 - 52,583,844 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,174,371 - 51,190,608 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,612,674 - 53,628,901 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,613,994 - 53,720,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,703,116 - 52,719,308 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,289,380 - 52,305,619 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,073,474 - 53,089,705 (-)NCBIUU_Cfam_GSD_1.0
SLC22A11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,555,941 - 64,572,875 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,555,690 - 64,572,875 (+)EnsemblGRCh38hg38GRCh38
GRCh371164,323,413 - 64,340,347 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,079,674 - 64,095,575 (+)NCBINCBI36Build 36hg18NCBI36
Build 341164,079,673 - 64,095,574NCBI
Celera1161,649,063 - 61,664,964 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,650,623 - 60,666,535 (+)NCBIHuRef
CHM1_11164,206,245 - 64,222,147 (+)NCBICHM1_1
T2T-CHM13v2.01164,548,682 - 64,565,616 (+)NCBIT2T-CHM13v2.0
Slc22a11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,556,098 - 20,596,012 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,582,736 - 20,595,872 (-)NCBIChiLan1.0ChiLan1.0
SLC22A11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,780,073 - 65,797,005 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,825,467 - 66,842,389 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,909,374 - 59,925,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,254,038 - 63,271,283 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,254,038 - 63,271,283 (+)Ensemblpanpan1.1panPan2
Slc22a11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,271,862 - 8,297,300 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365994,714,239 - 4,726,680 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,590,391 - 7,603,116 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,590,391 - 7,603,567 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,777,940 - 6,792,239 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,664,015 - 9,680,559 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,662,327 - 9,679,813 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,055,465 - 107,071,412 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,797,766 - 21,811,215 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,797,264 - 21,810,904 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC22A11
306 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 7 5 5 2 1
Below cutoff 5 9 1 6 1 6 1 10 3 5 4

Sequence


RefSeq Acc Id: ENSCAFT00000022845   ⟹   ENSCAFP00000021220
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1852,568,396 - 52,583,844 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000077660   ⟹   ENSCAFP00000058240
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1852,568,937 - 52,583,844 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000091527   ⟹   ENSCAFP00000050678
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1852,568,396 - 52,583,844 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053850   ⟹   ENSCAFP00845042323
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1853,613,994 - 53,720,726 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053865   ⟹   ENSCAFP00845042330
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1853,613,994 - 53,720,726 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053892   ⟹   ENSCAFP00845042352
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1853,613,994 - 53,629,170 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053913   ⟹   ENSCAFP00845042367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1853,613,994 - 53,629,170 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053920   ⟹   ENSCAFP00845042371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1853,614,535 - 53,629,170 (-)Ensembl
RefSeq Acc Id: XM_038425151   ⟹   XP_038281079
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01853,612,674 - 53,628,900 (-)NCBI
RefSeq Acc Id: XM_038425152   ⟹   XP_038281080
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01853,614,462 - 53,628,901 (-)NCBI
RefSeq Acc Id: XM_038454392   ⟹   XP_038310320
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1851,176,161 - 51,190,608 (-)NCBI
RefSeq Acc Id: XM_038501412   ⟹   XP_038357340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11852,703,116 - 52,719,308 (-)NCBI
RefSeq Acc Id: XM_038564097   ⟹   XP_038420025
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01853,073,474 - 53,089,704 (-)NCBI
RefSeq Acc Id: XM_038564098   ⟹   XP_038420026
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01853,075,260 - 53,089,705 (-)NCBI
RefSeq Acc Id: XM_038628240   ⟹   XP_038484168
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01852,289,380 - 52,305,618 (-)NCBI
RefSeq Acc Id: XM_038628241   ⟹   XP_038484169
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01852,291,166 - 52,305,619 (-)NCBI
RefSeq Acc Id: XM_849831   ⟹   XP_854924
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11852,567,074 - 52,583,574 (-)NCBI
Dog10K_Boxer_Tasha1851,174,371 - 51,190,607 (-)NCBI
Sequence:
RefSeq Acc Id: XP_854924   ⟸   XM_849831
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MA74 (UniProtKB/TrEMBL),   A0A8I3Q9C7 (UniProtKB/TrEMBL),   A0A8C0TJN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000058240   ⟸   ENSCAFT00000077660
RefSeq Acc Id: ENSCAFP00000050678   ⟸   ENSCAFT00000091527
RefSeq Acc Id: ENSCAFP00000021220   ⟸   ENSCAFT00000022845
RefSeq Acc Id: XP_038357340   ⟸   XM_038501412
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038484168   ⟸   XM_038628240
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038484169   ⟸   XM_038628241
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038281079   ⟸   XM_038425151
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MA74 (UniProtKB/TrEMBL),   A0A8I3Q9C7 (UniProtKB/TrEMBL),   A0A8C0TJN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281080   ⟸   XM_038425152
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MFU2 (UniProtKB/TrEMBL),   A0A8I3Q494 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038310320   ⟸   XM_038454392
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MFU2 (UniProtKB/TrEMBL),   A0A8I3Q494 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420025   ⟸   XM_038564097
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MA74 (UniProtKB/TrEMBL),   A0A8C0TJN2 (UniProtKB/TrEMBL),   A0A8I3Q9C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420026   ⟸   XM_038564098
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MFU2 (UniProtKB/TrEMBL),   A0A8I3Q494 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845042367   ⟸   ENSCAFT00845053913
RefSeq Acc Id: ENSCAFP00845042352   ⟸   ENSCAFT00845053892
RefSeq Acc Id: ENSCAFP00845042330   ⟸   ENSCAFT00845053865
RefSeq Acc Id: ENSCAFP00845042371   ⟸   ENSCAFT00845053920
RefSeq Acc Id: ENSCAFP00845042323   ⟸   ENSCAFT00845053850

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025146 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030003839 UniProtKB/TrEMBL
  ENSCAFG00040023462 UniProtKB/TrEMBL
  ENSCAFG00845030346 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000022845.5 UniProtKB/TrEMBL
  ENSCAFT00000077660.2 UniProtKB/TrEMBL
  ENSCAFT00000091527.2 UniProtKB/TrEMBL
  ENSCAFT00000101007.1 UniProtKB/TrEMBL
  ENSCAFT00000103714.1 UniProtKB/TrEMBL
  ENSCAFT00030007291.1 UniProtKB/TrEMBL
  ENSCAFT00030007352.1 UniProtKB/TrEMBL
  ENSCAFT00030007389.1 UniProtKB/TrEMBL
  ENSCAFT00040043867.1 UniProtKB/TrEMBL
  ENSCAFT00845053850.1 UniProtKB/TrEMBL
  ENSCAFT00845053865.1 UniProtKB/TrEMBL
  ENSCAFT00845053892 ENTREZGENE
  ENSCAFT00845053892.1 UniProtKB/TrEMBL
  ENSCAFT00845053913.1 UniProtKB/TrEMBL
  ENSCAFT00845053920 ENTREZGENE
  ENSCAFT00845053920.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene SLC22A11 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 22 MEMBER 11 UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A8C0M9Y0_CANLF UniProtKB/TrEMBL
  A0A8C0MA74 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MFU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TJN2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q397_CANLF UniProtKB/TrEMBL
  A0A8I3Q3C7_CANLF UniProtKB/TrEMBL
  A0A8I3Q494 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q9C7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QA87_CANLF UniProtKB/TrEMBL
  A0A8P0TTX5_CANLF UniProtKB/TrEMBL
  A0A8P0TU26_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:46272 ENTREZGENE