Or6c203l1 (olfactory receptor family 6 subfamily C member 203 like 1) - Rat Genome Database

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Gene: Or6c203l1 (olfactory receptor family 6 subfamily C member 203 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or6c203l1
Name: olfactory receptor family 6 subfamily C member 203 like 1
RGD ID: 1332891
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell.
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: LOC288803; olfactory receptor 6C2; olfactory receptor 883; olfactory receptor 883-like; olfactory receptor 910; olfactory receptor gene Olr883; olfactory receptor gene Olr910; olfactory receptor Olr883; olfactory receptor Olr883-like; olfactory receptor Olr910; Olr883; Olr910
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr873,312,697 - 3,315,043 (-)NCBIGRCr8
mRatBN7.272,655,236 - 2,657,582 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl72,655,236 - 2,656,168 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.073,874,135 - 3,875,068 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl73,874,135 - 3,875,067 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.075,767,581 - 5,770,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.472,642,386 - 2,643,321 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.172,642,385 - 2,643,321 (-)NCBI
Celera72,006,791 - 2,007,726 (+)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Or6c203l1
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:16
Count of miRNA genes:15
Interacting mature miRNAs:16
Transcripts:ENSRNOT00000072301
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat

Markers in Region
AU047659  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.271,724,251 - 1,724,366 (-)MAPPERmRatBN7.2
Rnor_6.075,655,051 - 5,655,167NCBIRnor6.0
Rnor_6.073,875,543 - 3,875,653NCBIRnor6.0
Rnor_5.073,864,451 - 3,864,561UniSTSRnor5.0
Rnor_5.075,766,993 - 5,767,109UniSTSRnor5.0
RGSC_v3.473,733,513 - 3,733,629UniSTSRGSC3.4
RGSC_v3.472,643,799 - 2,643,915UniSTSRGSC3.4
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression

ectoderm
endocrine system
mesenchyme
mesoderm
2 2 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000072301   ⟹   ENSRNOP00000067782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl73,874,135 - 3,875,067 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl72,655,236 - 2,656,168 (-)Ensembl
RefSeq Acc Id: XM_056984462   ⟹   XP_056840442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr873,312,697 - 3,315,043 (-)NCBI
mRatBN7.272,655,236 - 2,657,582 (-)NCBI
Protein Sequences
Protein RefSeqs XP_056840442 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000067782   ⟸   ENSRNOT00000072301
RefSeq Acc Id: XP_056840442   ⟸   XM_056984462

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1332891 AgrOrtholog
BioCyc Gene G2FUF-35274 BioCyc
Ensembl Genes ENSRNOG00000047155 Ensembl
  ENSRNOG00000063627 Ensembl
NCBI Gene 288803 ENTREZGENE
PhenoGen Or6c203l1 PhenoGen
RatGTEx ENSRNOG00000047155 RatGTEx
  ENSRNOG00000063627 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Or6c203l1  olfactory receptor family 6 subfamily C member 203 like 1  LOC288803  olfactory receptor 883-like  Symbol and Name Changed 1299863 APPROVED
2021-07-20 LOC288803  olfactory receptor 883-like  Olr883  olfactory receptor 883  Name and Symbol changed 629549 APPROVED
2020-08-21 Olr883  olfactory receptor 883  Olr910  olfactory receptor 910  Data merged from RGD:1333705 737654 PROVISIONAL
2008-04-30 Olr883  olfactory receptor 883   Olr883_predicted  olfactory receptor 883 (predicted)  'predicted' is removed 2292626 APPROVED
2008-04-30 Olr910  olfactory receptor 910   Olr910_predicted  olfactory receptor 910 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr910_predicted  olfactory receptor 910 (predicted)      Symbol and Name status set to approved 70820 APPROVED
2005-02-04 Olr883_predicted  olfactory receptor 883 (predicted)      Symbol and Name status set to approved 70820 APPROVED