Arl14ep (ARF like GTPase 14 effector protein)

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Gene: Arl14ep (ARF like GTPase 14 effector protein) Rattus norvegicus

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Symbol:

Arl14ep

Name:

ARF like GTPase 14 effector protein (Ensembl:ADP-ribosylation factor like GTPase 14 effector protein)

RGD ID:

1311463

Description:

Predicted to be located in several cellular components, including cytosol; focal adhesion; and nuclear lumen. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human ARL14EP (ADP ribosylation factor like GTPase 14 effector protein); INTERACTS WITH bisphenol A; gentamycin; methamphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ADP-ribosylation factor like GTPase 14 effector protein; ADP-ribosylation factor-like 14 effector protein; ARF7 effector protein; ARF7EP; ARL14 effector protein; hypothetical protein LOC311279; LOC311279; MGC109199; RGD1311463; similar to RIKEN cDNA 2700007P21; uncharacterized protein C11orf46 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	113,896,731 - 113,908,994 (-)	NCBI		GRCr8
mRatBN7.2	3	93,441,952 - 93,454,282 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	93,443,183 - 93,454,155 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	96,955,937 - 96,965,169 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	105,554,858 - 105,564,090 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	103,366,882 - 103,376,884 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	97,981,506 - 97,993,684 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	97,983,686 - 97,993,684 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	104,595,054 - 104,607,073 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	92,462,491 - 92,472,493 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	92,358,919 - 92,368,921 (-)	NCBI
Celera	3	92,491,168 - 92,501,152 (-)	NCBI		Celera
Cytogenetic Map	3	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental Disabilities (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

copper(II) sulfate (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diethylstilbestrol (ISO)

folic acid (ISO)

gentamycin (EXP)

methamphetamine (EXP)

N(4)-hydroxycytidine (ISO)

N-methyl-4-phenylpyridinium (EXP)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (IEA,ISO)

focal adhesion (IEA,ISO)

intracellular membrane-bounded organelle (IBA,ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

plasma membrane (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334

Genomics

Comparative Map Data

Arl14ep
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	113,896,731 - 113,908,994 (-)	NCBI		GRCr8
mRatBN7.2	3	93,441,952 - 93,454,282 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	93,443,183 - 93,454,155 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	96,955,937 - 96,965,169 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	105,554,858 - 105,564,090 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	103,366,882 - 103,376,884 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	97,981,506 - 97,993,684 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	97,983,686 - 97,993,684 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	104,595,054 - 104,607,073 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	92,462,491 - 92,472,493 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	92,358,919 - 92,368,921 (-)	NCBI
Celera	3	92,491,168 - 92,501,152 (-)	NCBI		Celera
Cytogenetic Map	3	q33	NCBI

ARL14EP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	30,323,104 - 30,338,223 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	30,323,104 - 30,338,458 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	30,344,651 - 30,359,770 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	30,301,225 - 30,315,741 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	30,491,042 - 30,505,559 (+)	NCBI		Celera
Cytogenetic Map	11	p14.1	NCBI
HuRef	11	30,037,207 - 30,051,724 (+)	NCBI		HuRef
CHM1_1	11	30,343,723 - 30,358,213 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	30,457,405 - 30,472,507 (+)	NCBI		T2T-CHM13v2.0

Arl14ep
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	106,792,874 - 106,804,742 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	106,792,872 - 106,804,769 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	106,962,529 - 106,974,397 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	106,962,527 - 106,974,424 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	106,802,686 - 106,814,554 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	106,763,368 - 106,775,236 (-)	NCBI		MGSCv36	mm8
Celera	2	108,184,238 - 108,196,106 (-)	NCBI		Celera
Cytogenetic Map	2	E3	NCBI
cM Map	2	55.97	NCBI

Arl14ep
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955476	8,865,025 - 8,868,935 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955476	8,858,387 - 8,868,504 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARL14EP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	32,542,891 - 32,558,291 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	32,547,529 - 32,566,210 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	30,296,433 - 30,311,798 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	30,188,013 - 30,203,170 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	30,188,013 - 30,203,170 (+)	Ensembl	panpan1.1		panPan2

ARL14EP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	36,961,451 - 36,980,631 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	36,963,979 - 36,980,539 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	36,609,368 - 36,628,568 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	37,599,748 - 37,618,984 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	37,599,451 - 37,618,916 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	37,189,561 - 37,208,767 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	36,765,399 - 36,784,617 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	37,395,365 - 37,414,589 (-)	NCBI		UU_Cfam_GSD_1.0

Arl14ep
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	34,196,728 - 34,203,726 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	7,318,599 - 7,328,508 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	7,322,297 - 7,328,478 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARL14EP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	30,296,444 - 30,311,521 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	30,293,400 - 30,311,583 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ARL14EP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	34,834,951 - 34,848,618 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	34,833,165 - 34,848,597 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	132,011,951 - 132,027,280 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arl14ep
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	19,396,744 - 19,407,038 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624766	19,394,384 - 19,405,418 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arl14ep
61 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	45
Count of miRNA genes:	42
Interacting mature miRNAs:	45
Transcripts:	ENSRNOT00000006481
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat

Markers in Region

BF397937

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	93,451,982 - 93,452,185 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	97,991,551 - 97,991,753	NCBI	Rnor6.0
Rnor_5.0	3	104,604,837 - 104,605,039	UniSTS	Rnor5.0
RGSC_v3.4	3	92,470,360 - 92,470,562	UniSTS	RGSC3.4
Celera	3	92,499,019 - 92,499,221	UniSTS
RH 3.4 Map	3	783.7	UniSTS
Cytogenetic Map	3	q33	UniSTS

RH134156

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	93,444,196 - 93,444,386 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	97,983,765 - 97,983,954	NCBI	Rnor6.0
Rnor_5.0	3	104,597,313 - 104,597,502	UniSTS	Rnor5.0
RGSC_v3.4	3	92,462,574 - 92,462,763	UniSTS	RGSC3.4
Celera	3	92,491,251 - 92,491,440	UniSTS
RH 3.4 Map	3	782.7	UniSTS
Cytogenetic Map	3	q33	UniSTS

RH137854

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RH 3.4 Map	3	781.0	UniSTS
Cytogenetic Map	3	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC113706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006481 ⟹ ENSRNOP00000006481

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	93,443,183 - 93,454,155 (-)	Ensembl
Rnor_6.0 Ensembl	3	97,983,686 - 97,993,684 (-)	Ensembl

RefSeq Acc Id:

NM_001014045 ⟹ NP_001014067

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	113,898,831 - 113,908,833 (-)	NCBI
mRatBN7.2	3	93,444,114 - 93,454,116 (-)	NCBI
Rnor_6.0	3	97,983,682 - 97,993,684 (-)	NCBI
Rnor_5.0	3	104,595,054 - 104,607,073 (-)	NCBI
RGSC_v3.4	3	92,462,491 - 92,472,493 (-)	RGD
Celera	3	92,491,168 - 92,501,152 (-)	RGD

Sequence:

show sequence

ACCGTAGCAGCTCAGGTGGACCGGGCTGCACGGCTGTTGACCTACCAAAGAGATTTCTAGACAA
AATAAAAGAGGGGAAACGTGGTAGATTCAAGGGTGATGGATCCGTGCTCGGTCGGAGTCCAGCT
TCGCACCACACATGACTGCCATAAAACCTTCTACACTCGGCACACGGGCTTCAAGACATTGAAA
GAATTGTCATCAAATGACATGCTTTTACTTCAGCTTAGAACTGGAATGACACTTTCTGGGAATA
ATACGATTTGTCTCCATCATGTAAAAATTTATATTGAAAGATTTGAAGAGTTACAGAAGTCATG
TTGTGACCCATTTAACATACACAAAAAGCTAGCCAAAAAGAATCTACATGTAATTGACTTAGAT
GATGCCACTTTTCTGAGTGCAAAGTTTGGAAGGCAGCTCGTACCTGGTTGGAAGCTTTGCCCAA
AATGTACCCAGATCATCAATGGAAGCGTGGATGTTGATTCAGATGACCGCCAGAGACGGAAACC
CGAGTCAGATGGAAGGACTGCTAAAGCTCTGAGGTCACTACAGTTTACAAACCCAGGAAAGCAA
ACTGAATTTGCTCCAGAAAGTGGTAAAAGGGAGAAAAGGAAGCTCACCAAAAATGCAAGCGCTA
GTTCTGACAGACAAATTATTCCAGCAAAGAGTAAGGTGTATGACAGCCAGGGCCTGCTGATATT
CAGCGGCATGGACCTCTGCGACTGCCTGGACGAGGACTGCTTGGGATGCTTCTACGCCTGCCCC
ACCTGTGGCTCCACCAAATGTGGGGCGGAGTGCCGCTGCGACCGCAAGTGGCTGTATGAGCAGA
TAGAGATTGAAGGAGGCGAGATAATCCATAATAAACACGCTGGCAAAGCATATGGTCTGTTATC
TCCCTGTCACCCATATGATATTTTACAAAAGTGATCGCCAAATATTGATCAGCAAAGATGAAAA
CGCGGCAAAGACACGAACAATGACCTTTCTGGAAGTGAAATTTGGATCAGTCATAAATGGAATT
GTGGATGCCACCGCTGGTCATGGGAGTGTTGATTACCGCTGCTGTCGTTGAGACGTGTGCATCA
GAGGAACCTGGTGAGGGAACTGACACACATTGCCGAGAGAAGCAGCTGGGATGAGCAAGAAGAC
TGTCCCAGACAAAGTTACGGTAAAAACTTAACATAAAGGCTGTTTACTGTAAATAGATTCGTCA
CAGCATTGAAACGGTCAGAAAGGTTCCTGTCACTGTTACTAACACACCAGTCAGAGGCTATTCA
GACGACTTTAGGCAATACAATAAAACTCTTAATTCTCAATAAAAAAAAAAAAAAAAAAAAAAAA
AAA

hide sequence

RefSeq Acc Id:

XM_039104930 ⟹ XP_038960858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	113,896,731 - 113,908,994 (-)	NCBI
mRatBN7.2	3	93,441,952 - 93,454,279 (-)	NCBI

RefSeq Acc Id:

XM_039104931 ⟹ XP_038960859

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	113,896,731 - 113,908,714 (-)	NCBI
mRatBN7.2	3	93,441,952 - 93,452,108 (-)	NCBI

RefSeq Acc Id:

XM_063283707 ⟹ XP_063139777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	113,896,731 - 113,908,709 (-)	NCBI

RefSeq Acc Id:

XR_005501868

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	113,899,846 - 113,908,994 (-)	NCBI
mRatBN7.2	3	93,445,129 - 93,454,278 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014067	(Get FASTA)	NCBI Sequence Viewer
	XP_038960858	(Get FASTA)	NCBI Sequence Viewer
	XP_038960859	(Get FASTA)	NCBI Sequence Viewer
	XP_063139777	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89920	(Get FASTA)	NCBI Sequence Viewer
	EDL79744	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006481.4
GenBank Protein	Q5FVK8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014067 ⟸ NM_001014045

- UniProtKB:

Q5FVK8 (UniProtKB/Swiss-Prot), A6HNZ2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDPCSVGVQLRTTHDCHKTFYTRHTGFKTLKELSSNDMLLLQLRTGMTLSGNNTICLHHVKIYI
ERFEELQKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCTQIINGSVDV
DSDDRQRRKPESDGRTAKALRSLQFTNPGKQTEFAPESGKREKRKLTKNASASSDRQIIPAKSK
VYDSQGLLIFSGMDLCDCLDEDCLGCFYACPTCGSTKCGAECRCDRKWLYEQIEIEGGEIIHNK
HAGKAYGLLSPCHPYDILQK

hide sequence

Ensembl Acc Id:

ENSRNOP00000006481 ⟸ ENSRNOT00000006481

RefSeq Acc Id:	XP_038960858 ⟸ XM_039104930
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038960859 ⟸ XM_039104931
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063139777 ⟸ XM_063283707
- Peptide Label:	isoform X2
- UniProtKB:	Q5FVK8 (UniProtKB/Swiss-Prot), A6HNZ2 (UniProtKB/TrEMBL)

Protein Domains

ARF7 effector protein C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5FVK8-F1-model_v2	AlphaFold	Q5FVK8	1-276	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692275

Promoter ID:

EPDNEW_R2800

Type:

initiation region

Name:

Arl14ep_1

Description:

ADP-ribosylation factor like GTPase 14 effector protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	97,993,742 - 97,993,802	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311463	AgrOrtholog
BioCyc Gene	G2FUF-48503	BioCyc
Ensembl Genes	ENSRNOG00000004891	Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000006481.5	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7306710	IMAGE-MGC_LOAD
InterPro	ARF7EP_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ARL14EP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:311279	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:109199	IMAGE-MGC_LOAD
NCBI Gene	311279	ENTREZGENE
PANTHER	ARL14 EFFECTOR PROTEIN	UniProtKB/Swiss-Prot
	ARL14 EFFECTOR PROTEIN	UniProtKB/TrEMBL
	ARL14 EFFECTOR PROTEIN	UniProtKB/TrEMBL
	PTHR46536	UniProtKB/Swiss-Prot
Pfam	ARF7EP_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Arl14ep	PhenoGen
RatGTEx	ENSRNOG00000004891	RatGTEx
UniProt	A6HNZ2	ENTREZGENE, UniProtKB/TrEMBL
	AL14E_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-11-07	Arl14ep	ARF like GTPase 14 effector protein	Arl14ep	ADP-ribosylation factor like GTPase 14 effector protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-09	Arl14ep	ADP-ribosylation factor like GTPase 14 effector protein	Arl14ep	ADP-ribosylation factor-like 14 effector protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-10	Arl14ep	ADP-ribosylation factor-like 14 effector protein	RGD1311463	similar to RIKEN cDNA 2700007P21	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1311463	similar to RIKEN cDNA 2700007P21	RGD1311463_predicted	similar to RIKEN cDNA 2700007P21 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1311463_predicted	similar to RIKEN cDNA 2700007P21 (predicted)	LOC311279_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC311279_predicted	similar to RIKEN cDNA 2700007P21 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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