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Gene: Eprs1 (glutamyl-prolyl-tRNA synthetase 1) Rattus norvegicus

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Symbol:

Eprs1

Name:

glutamyl-prolyl-tRNA synthetase 1

RGD ID:

1310952

Description:

Predicted to enable several functions, including aminoacyl-tRNA ligase activity; protein homodimerization activity; and zinc ion binding activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; cellular response to type II interferon; and tRNA aminoacylation for protein translation. Predicted to be located in plasma membrane. Predicted to be part of GAIT complex; aminoacyl-tRNA synthetase multienzyme complex; and ribonucleoprotein complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 15. Orthologous to human EPRS1 (glutamyl-prolyl-tRNA synthetase 1); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; INTERACTS WITH (S)-colchicine; 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bifunctional aminoacyl-tRNA synthetase; bifunctional glutamate/proline--tRNA ligase; Eprs; glutamyl-prolyl-tRNA synthetase; LOC108351325; LOC289352; proline--tRNA ligase-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EPRS1 (glutamyl-prolyl-tRNA synthetase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Eprs1 (glutamyl-prolyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Eprs1 (glutamyl-prolyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EPRS1 (glutamyl-prolyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EPRS1 (glutamyl-prolyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Eprs1 (glutamyl-prolyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EPRS1 (glutamyl-prolyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EPRS1 (glutamyl-prolyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Eprs1 (glutamyl-prolyl-tRNA synthetase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	EPRS1 (glutamyl-prolyl-tRNA synthetase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Eprs1 (glutamyl-prolyl-tRNA synthetase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	eprs (glutamyl-prolyl-tRNA synthetase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ears-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	GluProRS	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YHR020W	Alliance	DIOPT (OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	eprs1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	99,431,955 - 99,503,510 (+)	NCBI		GRCr8
mRatBN7.2	13	96,901,548 - 96,971,966 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	96,901,575 - 96,971,966 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	99,400,886 - 99,471,298 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	100,806,806 - 100,876,877 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	97,983,145 - 98,053,557 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	103,300,911 - 103,371,651 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	103,300,932 - 103,371,577 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	107,973,665 - 108,044,298 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	101,375,656 - 101,448,175 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	101,564,698 - 101,637,217 (+)	NCBI
Celera	13	96,415,061 - 96,484,921 (+)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental Disabilities (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

hypomyelinating leukodystrophy 15 (ISO)

intellectual disability (ISO)

Loeys-Dietz syndrome 4 (ISO)

Martsolf Syndrome (ISO)

parathyroid carcinoma (ISO)

Usher syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-amphetamine (ISO)

(S)-colchicine (EXP)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (EXP,ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-amino-2-deoxy-D-glucopyranose (ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

acetamide (EXP)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucosamine (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-D-glucosamine (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chloroacetaldehyde (ISO)

chloropicrin (ISO)

chloroprene (EXP)

chlorpyrifos (EXP,ISO)

chromium(6+) (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (EXP,ISO)

dioxygen (ISO)

diuron (EXP)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethanol (EXP)

fenofibrate (EXP,ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

geldanamycin (ISO)

gentamycin (EXP)

glafenine (EXP)

glyphosate (ISO)

hydralazine (ISO)

hydrogen peroxide (ISO)

hydrogen sulfide (ISO)

ibuprofen (ISO)

ivermectin (ISO)

L-ascorbic acid (ISO)

lead diacetate (EXP)

levonorgestrel (ISO)

menadione (ISO)

metformin (EXP)

methapyrilene (EXP)

methidathion (ISO)

methotrexate (ISO)

N-methyl-4-phenylpyridinium (EXP)

nefazodone (EXP)

nimesulide (EXP)

ochratoxin A (ISO)

oxaliplatin (EXP)

p-toluidine (EXP)

paraquat (EXP)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

T-2 toxin (ISO)

testosterone enanthate (ISO)

testosterone undecanoate (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (EXP)

triptonide (ISO)

trovafloxacin (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vincaleukoblastine (EXP)

vinclozolin (EXP)

vincristine (EXP)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to insulin stimulus (ISO)

cellular response to type II interferon (ISO)

glutamyl-tRNA aminoacylation (ISO)

negative regulation of translation (ISO)

prolyl-tRNA aminoacylation (IBA,ISO)

regulation of long-chain fatty acid import into cell (ISO)

Cellular Component

aminoacyl-tRNA synthetase multienzyme complex (IBA,ISO)

cytoplasm (ISO)

cytosol (ISO)

GAIT complex (ISO)

plasma membrane (ISO)

ribonucleoprotein complex (ISO)

Molecular Function

ATP binding (IEA)

glutamate-tRNA ligase activity (ISO)

GTPase binding (ISO)

identical protein binding (ISO)

proline-tRNA ligase activity (IBA,ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

RNA stem-loop binding (ISO)

zinc ion binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

AGAT deficiency pathway (ISO)

aminoacyl-tRNA biosynthetic pathway (IEA)

arginine and proline metabolic pathway (ISO)

guanidinoacetate methyltransferase deficiency pathway (ISO)

gyrate atrophy pathway (ISO)

hyperprolinemia type I pathway (ISO)

hyperprolinemia type II pathway (ISO)

ornithine translocase deficiency pathway (ISO)

porphyrin and chlorophyll metabolic pathway (IEA)

prolidase deficiency pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10791971	PMID:12060739	PMID:12477932	PMID:15479637	PMID:19131329	PMID:19289464	PMID:19946888	PMID:22082260	PMID:23071094	PMID:23263184	PMID:24100331	PMID:24337748
PMID:28178239

Genomics

Comparative Map Data

Eprs1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	99,431,955 - 99,503,510 (+)	NCBI		GRCr8
mRatBN7.2	13	96,901,548 - 96,971,966 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	96,901,575 - 96,971,966 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	99,400,886 - 99,471,298 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	100,806,806 - 100,876,877 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	97,983,145 - 98,053,557 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	103,300,911 - 103,371,651 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	103,300,932 - 103,371,577 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	107,973,665 - 108,044,298 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	101,375,656 - 101,448,175 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	101,564,698 - 101,637,217 (+)	NCBI
Celera	13	96,415,061 - 96,484,921 (+)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

EPRS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	219,968,600 - 220,046,505 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	219,968,600 - 220,046,530 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	220,141,942 - 220,219,847 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	218,208,565 - 218,286,623 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	216,530,337 - 216,596,723	NCBI
Celera	1	193,361,173 - 193,439,298 (-)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI
HuRef	1	190,816,669 - 190,894,723 (-)	NCBI		HuRef
CHM1_1	1	221,414,886 - 221,492,894 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	219,207,867 - 219,285,874 (-)	NCBI		T2T-CHM13v2.0

Eprs1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	185,093,614 - 185,160,557 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	185,095,241 - 185,160,557 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	185,361,417 - 185,428,360 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	185,363,044 - 185,428,360 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	187,186,974 - 187,252,234 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	187,063,883 - 187,129,143 (+)	NCBI		MGSCv36	mm8
MGSCv36	1	186,479,177 - 186,544,604 (+)	NCBI		MGSCv36	mm8
Celera	1	192,317,193 - 192,381,950 (+)	NCBI		Celera
Cytogenetic Map	1	H5	NCBI
cM Map	1	89.5	NCBI

Eprs1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955520	3,550,558 - 3,606,697 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955520	3,550,558 - 3,606,015 (+)	NCBI	ChiLan1.0	ChiLan1.0

EPRS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	29,367,592 - 29,448,533 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	29,329,946 - 29,411,197 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	195,537,319 - 195,618,257 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	200,575,257 - 200,655,958 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	200,575,259 - 200,656,197 (-)	Ensembl	panpan1.1		panPan2

EPRS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	14,754,628 - 14,823,626 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	14,754,632 - 14,823,621 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	14,797,419 - 14,866,312 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	14,791,854 - 14,860,285 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	14,791,858 - 14,856,528 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	14,800,874 - 14,869,666 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	15,145,457 - 15,214,419 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	15,435,096 - 15,504,056 (-)	NCBI		UU_Cfam_GSD_1.0

Eprs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	56,897,415 - 56,971,602 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936650	2,145,607 - 2,220,019 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936650	2,145,614 - 2,219,812 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EPRS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	9,579,304 - 9,648,414 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	9,579,301 - 9,648,416 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	11,663,038 - 11,730,358 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EPRS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	9,534,747 - 9,618,119 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	9,534,114 - 9,618,141 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	9,840,725 - 9,924,504 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Eprs1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624835	3,635,457 - 3,695,909 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624835	3,635,829 - 3,695,875 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Eprs1
212 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	83
Count of miRNA genes:	61
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000038264
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	66451204	106807694	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	65103704	106807694	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	56056920	101056920	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	80753256	106807694	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	74023918	97213863	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	52362171	97362171	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	65103704	106807694	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	61825626	106807694	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	74862117	101339893	Rat

Markers in Region

RH142520

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	96,953,292 - 96,953,555 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	103,352,979 - 103,353,241	NCBI	Rnor6.0
Rnor_5.0	13	108,025,626 - 108,025,888	UniSTS	Rnor5.0
RGSC_v3.4	13	101,429,697 - 101,429,959	UniSTS	RGSC3.4
Celera	13	96,466,443 - 96,466,705	UniSTS
RH 3.4 Map	13	656.8	UniSTS
Cytogenetic Map	13	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY383705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000038264 ⟹ ENSRNOP00000033323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	96,901,703 - 96,971,966 (+)	Ensembl
Rnor_6.0 Ensembl	13	103,301,074 - 103,371,457 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085214 ⟹ ENSRNOP00000071057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	96,901,575 - 96,971,966 (+)	Ensembl
Rnor_6.0 Ensembl	13	103,300,932 - 103,371,577 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101144 ⟹ ENSRNOP00000083045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	96,901,703 - 96,971,966 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105669 ⟹ ENSRNOP00000083815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	96,905,045 - 96,971,966 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116204 ⟹ ENSRNOP00000090936

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	96,901,575 - 96,971,966 (+)	Ensembl

RefSeq Acc Id:

NM_001024238 ⟹ NP_001019409

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	99,433,253 - 99,503,316 (+)	NCBI
mRatBN7.2	13	96,901,703 - 96,971,772 (+)	NCBI
Rnor_6.0	13	103,301,074 - 103,371,457 (+)	NCBI
Rnor_5.0	13	107,973,665 - 108,044,298 (+)	NCBI
RGSC_v3.4	13	101,375,656 - 101,448,175 (+)	RGD
Celera	13	96,415,061 - 96,484,921 (+)	RGD

Sequence:

show sequence

ATGGCGGCGCTGTGCCTTACGGTGAACGCCGGAAACCCTCCACTGGGTTGTCGAGTTAAAGTGA
ACAAGAGAAATAAATCCTTCATGTTGTCATTTTTAGAAGCTCTGCTGGCAGTGGAGCATGTGAA
AGGTGATGTCAGCATTTCTGTGGAAGAAGGGAAGGAGAATCTTCTTCGGGTTTCTGAGAGTGTG
GTGTTCACTGACACAAATTCAATCCTGCGCTACTTGGCTAGAGTTGCAGCTACATCTGGGCTGT
ACGGTTCTAACCTGATGGAGCACACGGAGATTGATCATTGGTTGGAGTTCAGCGCTACAAAGTT
GTCTTCGTGTGATGTGCTGACTTCGGCAATCAAGGAGCTTAACCATTGCCTGTCTCTGAGAACA
TACCTGGTTGGGAACTCTTTGACTTTAGCAGATTTATGTGTTTGGGCCACCCTAAAAGGAAATG
CTGCATGTCAGGAGCACTTGAGACAGAGCAAAACCCTAGTCCACGTTAACCGCTGGTATGGCTT
TCTTGAAGCCCAGCAGGCCTTCCGTTCAGTTGGTACCAAGTGGGATGCTTCAGCAAACAAAGCT
ACAGGGGCACCTGACAGAAAACAAGATATTGGGAAATTCGTCGAGCTTCCGGGTGCAGAGATGG
GAAAGGTGACAGTCAGATTCCCCCCAGAGGCTAGTGGTTACTTACACATTGGGCATGCAAAGGC
TGCTCTTCTGAACCAGCACTACCAGGTTAACTTTAAAGGCAAACTGATCATGAGATTTGATGAC
ACAAACCCAGAAAAGGAAAAGGAAGATTTTGAGAAGGTCATCTTGGAAGATGTTGCAATGCTGC
ACATTAAACCAGATCAGTTTACTTACACTTCAGATCATTTTGAAACTATAATGAAGTATGCAGA
GAAATTAATTGAAGAAGGGAAGGCCTATGTGGACGACACTCCCGCAGACGAGATGAAGGCGGAG
CCTGTTGAGAAGAATCTACAAATGTGGGAAGAAATGAAAAGAGGAAGCCAGTTTGGTCAGTCCT
GTTGCCTGCGAGCAAAAATTGACATGAGTAGTAACAATGGGTGTATGAGGGACCCAACCCTTTA
CCGCTGCAAAATCCAGCCCCACCCAAGAACTGGGAATAAATACAATGTTTACCCAACGTATGAC
TTTGCCTGTCCTATAGTGGACAGCATTGAAGGTGTTACTCATGCCTTGAGGACGACAGAGTACC
ACGACCGAGATGAGCAGTTTTACTGGATTATTGAAGCCTTAGGCATAAGGAAACCATACATCTG
GGAATACAGTCGCTTAAATCTCAACAACACAGTGCTGTCCAAGAGAAAGCTTACGTGGTTTGTC
AATGAAGGACTGGGCTCCTCAAGGTCTGTTGTAAACATGGAATGGGACAAAATCTGGGCGTTTA
ACAAAAAGGTTATTGACCCTGTGGCTCCAAGGTACGTTGCATTGCTGAAGAAGGAGGTGATCCC
AGTGAACATCCTGGACGCGCAGGAGGAGATGAAGGAAGTAGCCAGACATCCCAAGAATCCTGAT
GTTGGTTTGAAGCCTGTGTGGTATAGTCCCAAGGTTTTCATAGAAGGAGCTGATGCAGAGACTT
TCTCAGAGGGTGAAATGGTCACATTTATAAACTGGGGCAACATCAACATTACTAAAATACACAA
AAATCCAGATGGAAAAATTACATCTCTGGATGCAAAATTGAATTTGGAAAACAAAGACTACAAG
AAAACAACTAAGATCACTTGGCTTGCGGAGACCACACAGGCTCTCCCTGTCCCGGCAGTCTGTG
TCACTTATGAGCACTTGATTACAAAGCCAGTGCTAGGAAAAGACGAGGACTTCAAGCAGTACGT
CAACAAAGACAGTAAGCATGAAGAACTAATGCTAGGAGATCCCTGCCTTAAGGATTTGAAGAAA
GGAGACATCATACAATTGCAGAGGCGCGGATTCTTCATATGCGACCAGCCGTACGAACCTGTCA
GCCCATATAGTTGCAAAGAAGCCCCCTGCATCTTGATATATATACCCGATGGGCACACCAAGGA
GATGCCAACATCTGGATCAAAGGAAAAGACTAAAGTGGAAATCTCAAAAAAGGAGACCGGCTCT
GCTCCTAAGGAGAGACCCGCAGCTGCTGTGAGTGCTCCCTGTGCTGCAGCTGAGGACGCTGCCA
TCCTCTACAGCAGAGTGGCGGTCCAGGGTGATGCGGTTCGCGACCTGAAAGCGAAGAAAGCACC
AAAGGAGGATATTGACGCAGCTGTGAAACAGCTTTTGACTTTGAAGGCTGAGTATAAAGAGAAA
ACTGGGCAGGAGTATAGACCTGGGAACCCCCCTACTGCAGCAGTGCAGACTGTTTCTACAAAGT
CCCCATCCAACACCGGGGAATACACATCTTTATACAATAAAGTTGCTGCCCAAGGGGAGCTGGT
CCGGAAGCTGAAAGCTGAAAAGGCTCCTAAGGCTAAAATAAATGATGCTGTAGAATGCTTACTG
TCCCTGAAAGCTGAGTATAAAGAAAAAACTGGGAAGGAGTATGTACCTGGCCAACTCCCAGCAT
CTCAGAACTCACATTCAAGTCCTGTCAGCAATGCCAAGCCTGTTGGATCAGAGACACCGGAAGC
CAAACTGCTGTTTGACAGAGTGGCTTGTCAAGGAGAAGTAGTTCGGAAACTTAAAGCTGAGAAG
GCCTCTAAGGATCAAGTGGATTCAGCCGTACAAGAACTTCTTCAGCTGAAGGCACAGTACAAGT
CACTGACAGGAATTGAGTATAAGCCTGTGTCTGCTACTGGGGCAGAAGACAAAGATAAGAAGAA
GAAAGAAAAAGAAAATAAGTCTGAAAAGCAGAATAAGCCTCAGAAACAAAATGATGGCCAAGGG
AAAGACTCTTCTAAAAGCCAAGGCAGCGGGCTGTCGTCCGGTGGAGCAGGAGAAGGGCAAGGGC
CCAAGAAACAGACCAGATTGGGTCTTGAAGCAAAAAAAGAAGAAAATCTTGCCGAATGGTATTC
CCAAGTCATCACGAAGTCAGAGATGATCGAATACTACGATGTGAGTGGCTGCTATATTCTCCGA
CCCTGGTCGTACTCCATCTGGGAATCCATTAAGGACTTCTTTGACGCGGAGATCAAGAAGCTCG
GCGTTGAGAACTGCTACTTCCCCATATTCGTGTCCCAGGGCGCACTAGAGAAGGAGAAGAACCA
CATTGCTGACTTTGCTCCCGAGGTTGCTTGGGTGACAAGATCTGGAAAGACAGAGCTGGCAGAG
CCGATTGCCATCCGTCCTACTAGTGAAACAGTAATGTATCCTGCATATGCAAAATGGGTGCAGT
CCCACAGAGACCTGCCCATCAGGCTCAACCAGTGGTGCAACGTGGTGCGCTGGGAGTTCAAACA
CCCACAACCTTTCCTCCGCACTCGGGAGTTCCTATGGCAGGAGGGGCACAGCGCCTTTGCCACC
TTTGAGGAGGCAGCTGACGAGGTGTTACAGATCCTCGAGTTATATGCTCGAGTGTATGAGGAGC
TCTTGGCAATCCCCGTCGTGAGAGGAAGGAAGACTGAGAAGGAAAAGTTTGCAGGAGGAGACTA
TACAACCACACTAGAAGCCTTCATATCTGCCAGCGGACGCGCTATCCAGGGAGCAACATCACAC
CATTTAGGCCAGAATTTCTCCAAAATGTGTGAAATAGTTTTTGAAGATCCCAAGACACCAGGAG
AAAAGCAGTTTGCATACCAGTGCTCCTGGGGCCTGACAACTCGCACTATCGGTGTGATGATCAT
GGTCCATGGGGACAACATGGGCTTAGTGTTACCTCCCCGTGTAGCGTCTGTCCAGGTGGTAGTC
ATTCCCTGTGGAATCACGAATACCTTGTCTGAAGAAGACAGAGAGGCCCTGATGGCAAAATGCA
ATGAGTACAGGAGACGGCTGCTCGGCGCTGACATCCGAGCTCGAGTCGATCTACGAGACAACTA
CTCACCAGGCTGGAAGTTCAACCACTGGGAGCTCAAGGGTGTTCCAGTCAGACTTGAGGTGGGG
CCACGTGATATGAAGAGCTGTCAGTTTGTAGCAGTCAGACGAGATACTGGAGAGAAGCTGACAA
TTGCTGAAAAGGAGGCGGAGTCTAAACTGAAAGGGGTTTTGGAAGACATCCAGCTTAACCTTTT
CACAAGGGCTTCTGAAGACCTTAAATCTCACATGGTTGTATCGGATACACTGGAAGACTTTCAG
AAGGTGCTAGATTCTGGGAAGGTTGCACAGATTCCATTCTGTGGGGAAATTGACTGTGAGGACT
GGATCAAAAAGACAACGGCCAGGGATCAGGATGTGGAACCTGGTGCTCCATCCATGGGAGCCAA
AAGCCTTTGCATTCCTTTCAACCCTCTGTGTGAGCTGCAGCCAGGAGCCATGTGTGTCTGTGGC
AAGAATCCTGCCAAGTTCTACACCTTGTTTGGTCGGAGTTACTGA

hide sequence

RefSeq Acc Id:

XM_006250425 ⟹ XP_006250487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	99,431,955 - 99,503,510 (+)	NCBI
mRatBN7.2	13	96,901,548 - 96,971,966 (+)	NCBI
Rnor_6.0	13	103,300,911 - 103,371,651 (+)	NCBI
Rnor_5.0	13	107,973,665 - 108,044,298 (+)	NCBI

Sequence:

show sequence

CAGCGTGCGCAATGACACTAGCGGTCGCGGCCTGTGGGGTGGAGTCAAGGCTGCGGTGCCTTCG
GTCGCGCGTACACGTTGCATCTCCTAGCTTCCTCCTGAACCCCGTTTTACGTTCGCGGCGGGGA
AAACAGCCTGACGAGTAGACTGCAGCTCCTGGGAGATGGCGGCGCTGTGCCTTACGGTGAACGC
CGGAAACCCTCCACTGGAAGCTCTGCTGGCAGTGGAGCATGTGAAAGGTGATGTCAGCATTTCT
GTGGAAGAAGGGAAGGAGAATCTTCTTCGGGTTTCTGAGAGTGTGGTGTTCACTGACACAAATT
CAATCCTGCGCTACTTGGCTAGAGTTGCAGCTACATCTGGGCTGTACGGTTCTAACCTGATGGA
GCACACGGAGATTGATCATTGGTTGGAGTTCAGCGCTACAAAGTTGTCTTCGTGTGATGTGCTG
ACTTCGGCAATCAAGGAGCTTAACCATTGCCTGTCTCTGAGAACATACCTGGTTGGGAACTCTT
TGACTTTAGCAGATTTATGTGTTTGGGCCACCCTAAAAGGAAATGCTGCATGTCAGGAGCACTT
GAGACAGAGCAAAACCCTAGTCCACGTTAACCGCTGGTATGGCTTTCTTGAAGCCCAGCAGGCC
TTCCGTTCAGTTGGTACCAAGTGGGATGCTTCAGCAAACAAAGCTACAGGGGCACCTGACAGAA
AACAAGATATTGGGAAATTCGTCGAGCTTCCGGGTGCAGAGATGGGAAAGGTGACAGTCAGATT
CCCCCCAGAGGCTAGTGGTTACTTACACATTGGGCATGCAAAGGCTGCTCTTCTGAACCAGCAC
TACCAGGTTAACTTTAAAGGCAAACTGATCATGAGATTTGATGACACAAACCCAGAAAAGGAAA
AGGAAGATTTTGAGAAGGTCATCTTGGAAGATGTTGCAATGCTGCACATTAAACCAGATCAGTT
TACTTACACTTCAGATCATTTTGAAACTATAATGAAGTATGCAGAGAAATTAATTGAAGAAGGG
AAGGCCTATGTGGACGACACTCCCGCAGACGAGATGAAGGCGGAGCGTGAGCAGAGGATAGAGT
CCAGACACAGGAAGAACCCTGTTGAGAAGAATCTACAAATGTGGGAAGAAATGAAAAGAGGAAG
CCAGTTTGGTCAGTCCTGTTGCCTGCGAGCAAAAATTGACATGAGTAGTAACAATGGGTGTATG
AGGGACCCAACCCTTTACCGCTGCAAAATCCAGCCCCACCCAAGAACTGGGAATAAATACAATG
TTTACCCAACGTATGACTTTGCCTGTCCTATAGTGGACAGCATTGAAGGTGTTACTCATGCCTT
GAGGACGACAGAGTACCACGACCGAGATGAGCAGTTTTACTGGATTATTGAAGCCTTAGGCATA
AGGAAACCATACATCTGGGAATACAGTCGCTTAAATCTCAACAACACAGTGCTGTCCAAGAGAA
AGCTTACGTGGTTTGTCAATGAAGGACTGGTAGATGGATGGGATGACCCTCGGTTTCCTACAGT
TCGTGGAGTTCTGAGGAGAGGGATGACAGTTGAGGGACTGAAGCAGTTCATTGCTGCTCAGGGC
TCCTCAAGGTCTGTTGTAAACATGGAATGGGACAAAATCTGGGCGTTTAACAAAAAGCTGCGAG
CTCTCTGTAAGAAGGTTATTGACCCTGTGGCTCCAAGGTACGTTGCATTGCTGAAGAAGGAGGT
GATCCCAGTGAACATCCTGGACGCGCAGGAGGAGATGAAGGAAGTAGCCAGACATCCCAAGAAT
CCTGATGTTGGTTTGAAGCCTGTGTGGTATAGTCCCAAGGTTTTCATAGAAGGAGCTGATGCAG
AGACTTTCTCAGAGGGTGAAATGGTCACATTTATAAACTGGGGCAACATCAACATTACTAAAAT
ACACAAAAATCCAGATGGAAAAATTACATCTCTGGATGCAAAATTGAATTTGGAAAACAAAGAC
TACAAGAAAACAACTAAGATCACTTGGCTTGCGGAGACCACACAGGCTCTCCCTGTCCCGGCAG
TCTGTGTCACTTATGAGCACTTGATTACAAAGCCAGTGCTAGGAAAAGACGAGGACTTCAAGCA
GTACGTCAACAAAGACAGTAAGCATGAAGAACTAATGCTAGGAGATCCCTGCCTTAAGGATTTG
AAGAAAGGAGACATCATACAATTGCAGAGGCGCGGATTCTTCATATGCGACCAGCCGTACGAAC
CTGTCAGCCCATATAGTTGCAAAGAAGCCCCCTGCATCTTGATATATATACCCGATGGGCACAC
CAAGGAGATGCCAACATCTGGATCAAAGGAAAAGACTAAAGTGGAAATCTCAAAAAAGGAGACC
GGCTCTGCTCCTAAGGAGAGACCCGCAGCTGCTGTGAGTGCTCCCTGTGCTGCAGCTGAGGACG
CTGCCATCCTCTACAGCAGAGTGGCGGTCCAGGGTGATGCGGTTCGCGACCTGAAAGCGAAGAA
AGCACCAAAGGAGGATATTGACGCAGCTGTGAAACAGCTTTTGACTTTGAAGGCTGAGTATAAA
GAGAAAACTGGGCAGGAGTATAGACCTGGGAACCCCCCTACTGCAGCAGTGCAGACTGTTTCTA
CAAAGTCCCCATCCAACACCGGGGAATACACATCTTTATACAATAAAGTTGCTGCCCAAGGGGA
GCTGGTCCGGAAGCTGAAAGCTGAAAAGGCTCCTAAGGCTAAAATAAATGATGCTGTAGAATGC
TTACTGTCCCTGAAAGCTGAGTATAAAGAAAAAACTGGGAAGGAGTATGTACCTGGCCAACTCC
CAGCATCTCAGAACTCACATTCAAGTCCTGTCAGCAATGCCAAGCCTGTTGGATCAGAGACACC
GGAAGCCAAACTGCTGTTTGACAGAGTGGCTTGTCAAGGAGAAGTAGTTCGGAAACTTAAAGCT
GAGAAGGCCTCTAAGGATCAAGTGGATTCAGCCGTACAAGAACTTCTTCAGCTGAAGGCACAGT
ACAAGTCACTGACAGGAATTGAGTATAAGCCTGTGTCTGCTACTGGGGCAGAAGACAAAGATAA
GAAGAAGAAAGAAAAAGAAAATAAGTCTGAAAAGCAGAATAAGCCTCAGAAACAAAATGATGGC
CAAGGGAAAGACTCTTCTAAAAGCCAAGGCAGCGGGCTGTCGTCCGGTGGAGCAGGAGAAGGGC
AAGGGCCCAAGAAACAGACCAGATTGGGTCTTGAAGCAAAAAAAGAAGAAAATCTTGCCGAATG
GTATTCCCAAGTCATCACGAAGTCAGAGATGATCGAATACTACGATGTGAGTGGCTGCTATATT
CTCCGACCCTGGTCGTACTCCATCTGGGAATCCATTAAGGACTTCTTTGACGCGGAGATCAAGA
AGCTCGGCGTTGAGAACTGCTACTTCCCCATATTCGTGTCCCAGGGCGCACTAGAGAAGGAGAA
GAACCACATTGCTGACTTTGCTCCCGAGGTTGCTTGGGTGACAAGATCTGGAAAGACAGAGCTG
GCAGAGCCGATTGCCATCCGTCCTACTAGTGAAACAGTAATGTATCCTGCATATGCAAAATGGG
TGCAGTCCCACAGAGACCTGCCCATCAGGCTCAACCAGTGGTGCAACGTGGTGCGCTGGGAGTT
CAAACACCCACAACCTTTCCTCCGCACTCGGGAGTTCCTATGGCAGGAGGGGCACAGCGCCTTT
GCCACCTTTGAGGAGGCAGCTGACGAGGTGTTACAGATCCTCGAGTTATATGCTCGAGTGTATG
AGGAGCTCTTGGCAATCCCCGTCGTGAGAGGAAGGAAGACTGAGAAGGAAAAGTTTGCAGGAGG
AGACTATACAACCACACTAGAAGCCTTCATATCTGCCAGCGGACGCGCTATCCAGGGAGCAACA
TCACACCATTTAGGCCAGAATTTCTCCAAAATGTGTGAAATAGTTTTTGAAGATCCCAAGACAC
CAGGAGAAAAGCAGTTTGCATACCAGTGCTCCTGGGGCCTGACAACTCGCACTATCGGTGTGAT
GATCATGGTCCATGGGGACAACATGGGCTTAGTGTTACCTCCCCGTGTAGCGTCTGTCCAGGTG
GTAGTCATTCCCTGTGGAATCACGAATACCTTGTCTGAAGAAGACAGAGAGGCCCTGATGGCAA
AATGCAATGAGTACAGGAGACGGCTGCTCGGCGCTGACATCCGAGCTCGAGTCGATCTACGAGA
CAACTACTCACCAGGCTGGAAGTTCAACCACTGGGAGCTCAAGGGTGTTCCAGTCAGACTTGAG
GTGGGGCCACGTGATATGAAGAGCTGTCAGTTTGTAGCAGTCAGACGAGATACTGGAGAGAAGC
TGACAATTGCTGAAAAGGAGGCGGAGTCTAAACTGAAAGGGGTTTTGGAAGACATCCAGCTTAA
CCTTTTCACAAGGGCTTCTGAAGACCTTAAATCTCACATGGTTGTATCGGATACACTGGAAGAC
TTTCAGAAGGTGCTAGATTCTGGGAAGGTTGCACAGATTCCATTCTGTGGGGAAATTGACTGTG
AGGACTGGATCAAAAAGACAACGGCCAGGGATCAGGATGTGGAACCTGGTGCTCCATCCATGGG
AGCCAAAAGCCTTTGCATTCCTTTCAACCCTCTGTGTGAGCTGCAGCCAGGAGCCATGTGTGTC
TGTGGCAAGAATCCTGCCAAGTTCTACACCTTGTTTGGTCGGAGTTACTGATGGATGAAACAGA
AGCCTCTCCCGTCCTTTTTTTAAAACCAATGATACTAAGATCTCAGATACAGTTTTTCTTTTTC
ATTTTTTAAAACTTCTAAAAAGGTCACAAAATAAACAGCTATTCTTATGCCCAAATTAACAGTG
GAAAATACTTTTCTGTAAACAGCCAGGGTAATAAAAACCATGAACTAATTGTA

hide sequence

RefSeq Acc Id:

XM_006250426 ⟹ XP_006250488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	99,431,955 - 99,503,510 (+)	NCBI
mRatBN7.2	13	96,901,548 - 96,971,966 (+)	NCBI
Rnor_6.0	13	103,300,912 - 103,371,651 (+)	NCBI
Rnor_5.0	13	107,973,665 - 108,044,298 (+)	NCBI

Sequence:

show sequence

AGCGTGCGCAATGACACTAGCGGTCGCGGCCTGTGGGGTGGAGTCAAGGCTGCGGTGCCTTCGG
TCGCGCGTACACGTTGCATCTCCTAGCTTCCTCCTGAACCCCGTTTTACGTTCGCGGCGGGGAA
AACAGCCTGACGAGTAGACTGCAGCTCCTGGGAGATGGCGGCGCTGTGCCTTACGGTGAACGCC
GGAAACCCTCCACTGGAAGCTCTGCTGGCAGTGGAGCATGTGAAAGGTGATGTCAGCATTTCTG
TGGAAGAAGGGAAGGAGAATCTTCTTCGGGTTTCTGAGAGTGTGGTGTTCACTGACACAAATTC
AATCCTGCGCTACTTGGCTAGAGTTGCAGCTACATCTGGGCTGTACGGTTCTAACCTGATGGAG
CACACGGAGATTGATCATTGGTTGGAGTTCAGCGCTACAAAGTTGTCTTCGTGTGATGTGCTGA
CTTCGGCAATCAAGGAGCTTAACCATTGCCTGTCTCTGAGAACATACCTGGTTGGGAACTCTTT
GACTTTAGCAGATTTATGTGTTTGGGCCACCCTAAAAGGAAATGCTGCATGTCAGGAGCACTTG
AGACAGAGCAAAACCCTAGTCCACGTTAACCGCTGGTATGGCTTTCTTGAAGCCCAGCAGGCCT
TCCGTTCAGTTGGTACCAAGTGGGATGCTTCAGCAAACAAAGCTACAGGGGCACCTGACAGAAA
ACAAGATATTGGGAAATTCGTCGAGCTTCCGGGTGCAGAGATGGGAAAGGTGACAGTCAGATTC
CCCCCAGAGGCTAGTGGTTACTTACACATTGGGCATGCAAAGGCTGCTCTTCTGAACCAGCACT
ACCAGGTTAACTTTAAAGGCAAACTGATCATGAGATTTGATGACACAAACCCAGAAAAGGAAAA
GGAAGATTTTGAGAAGGTCATCTTGGAAGATGTTGCAATGCTGCACATTAAACCAGATCAGTTT
ACTTACACTTCAGATCATTTTGAAACTATAATGAAGTATGCAGAGAAATTAATTGAAGAAGGGA
AGGCCTATGTGGACGACACTCCCGCAGACGAGATGAAGGCGGAGCGTGAGCAGAGGATAGAGTC
CAGACACAGGAAGAACCCTGTTGAGAAGAATCTACAAATGTGGGAAGAAATGAAAAGAGGAAGC
CAGTTTGGTCAGTCCTGTTGCCTGCGAGCAAAAATTGACATGAGTAGTAACAATGGGTGTATGA
GGGACCCAACCCTTTACCGCTGCAAAATCCAGCCCCACCCAAGAACTGGGAATAAATACAATGT
TTACCCAACGTATGACTTTGCCTGTCCTATAGTGGACAGCATTGAAGGTGTTACTCATGCCTTG
AGGACGACAGAGTACCACGACCGAGATGAGCAGTTTTACTGGATTATTGAAGCCTTAGGCATAA
GGAAACCATACATCTGGGAATACAGTCGCTTAAATCTCAACAACACAGTGCTGTCCAAGAGAAA
GCTTACGTGGTTTGTCAATGAAGGACTGGTAGATGGATGGGATGACCCTCGGTTTCCTACAGTT
CGTGGAGTTCTGAGGAGAGGGATGACAGTTGAGGGACTGAAGCAGTTCATTGCTGCTCAGGGCT
CCTCAAGGTCTGTTGTAAACATGGAATGGGACAAAATCTGGGCGTTTAACAAAAAGGTTATTGA
CCCTGTGGCTCCAAGGTACGTTGCATTGCTGAAGAAGGAGGTGATCCCAGTGAACATCCTGGAC
GCGCAGGAGGAGATGAAGGAAGTAGCCAGACATCCCAAGAATCCTGATGTTGGTTTGAAGCCTG
TGTGGTATAGTCCCAAGGTTTTCATAGAAGGAGCTGATGCAGAGACTTTCTCAGAGGGTGAAAT
GGTCACATTTATAAACTGGGGCAACATCAACATTACTAAAATACACAAAAATCCAGATGGAAAA
ATTACATCTCTGGATGCAAAATTGAATTTGGAAAACAAAGACTACAAGAAAACAACTAAGATCA
CTTGGCTTGCGGAGACCACACAGGCTCTCCCTGTCCCGGCAGTCTGTGTCACTTATGAGCACTT
GATTACAAAGCCAGTGCTAGGAAAAGACGAGGACTTCAAGCAGTACGTCAACAAAGACAGTAAG
CATGAAGAACTAATGCTAGGAGATCCCTGCCTTAAGGATTTGAAGAAAGGAGACATCATACAAT
TGCAGAGGCGCGGATTCTTCATATGCGACCAGCCGTACGAACCTGTCAGCCCATATAGTTGCAA
AGAAGCCCCCTGCATCTTGATATATATACCCGATGGGCACACCAAGGAGATGCCAACATCTGGA
TCAAAGGAAAAGACTAAAGTGGAAATCTCAAAAAAGGAGACCGGCTCTGCTCCTAAGGAGAGAC
CCGCAGCTGCTGTGAGTGCTCCCTGTGCTGCAGCTGAGGACGCTGCCATCCTCTACAGCAGAGT
GGCGGTCCAGGGTGATGCGGTTCGCGACCTGAAAGCGAAGAAAGCACCAAAGGAGGATATTGAC
GCAGCTGTGAAACAGCTTTTGACTTTGAAGGCTGAGTATAAAGAGAAAACTGGGCAGGAGTATA
GACCTGGGAACCCCCCTACTGCAGCAGTGCAGACTGTTTCTACAAAGTCCCCATCCAACACCGG
GGAATACACATCTTTATACAATAAAGTTGCTGCCCAAGGGGAGCTGGTCCGGAAGCTGAAAGCT
GAAAAGGCTCCTAAGGCTAAAATAAATGATGCTGTAGAATGCTTACTGTCCCTGAAAGCTGAGT
ATAAAGAAAAAACTGGGAAGGAGTATGTACCTGGCCAACTCCCAGCATCTCAGAACTCACATTC
AAGTCCTGTCAGCAATGCCAAGCCTGTTGGATCAGAGACACCGGAAGCCAAACTGCTGTTTGAC
AGAGTGGCTTGTCAAGGAGAAGTAGTTCGGAAACTTAAAGCTGAGAAGGCCTCTAAGGATCAAG
TGGATTCAGCCGTACAAGAACTTCTTCAGCTGAAGGCACAGTACAAGTCACTGACAGGAATTGA
GTATAAGCCTGTGTCTGCTACTGGGGCAGAAGACAAAGATAAGAAGAAGAAAGAAAAAGAAAAT
AAGTCTGAAAAGCAGAATAAGCCTCAGAAACAAAATGATGGCCAAGGGAAAGACTCTTCTAAAA
GCCAAGGCAGCGGGCTGTCGTCCGGTGGAGCAGGAGAAGGGCAAGGGCCCAAGAAACAGACCAG
ATTGGGTCTTGAAGCAAAAAAAGAAGAAAATCTTGCCGAATGGTATTCCCAAGTCATCACGAAG
TCAGAGATGATCGAATACTACGATGTGAGTGGCTGCTATATTCTCCGACCCTGGTCGTACTCCA
TCTGGGAATCCATTAAGGACTTCTTTGACGCGGAGATCAAGAAGCTCGGCGTTGAGAACTGCTA
CTTCCCCATATTCGTGTCCCAGGGCGCACTAGAGAAGGAGAAGAACCACATTGCTGACTTTGCT
CCCGAGGTTGCTTGGGTGACAAGATCTGGAAAGACAGAGCTGGCAGAGCCGATTGCCATCCGTC
CTACTAGTGAAACAGTAATGTATCCTGCATATGCAAAATGGGTGCAGTCCCACAGAGACCTGCC
CATCAGGCTCAACCAGTGGTGCAACGTGGTGCGCTGGGAGTTCAAACACCCACAACCTTTCCTC
CGCACTCGGGAGTTCCTATGGCAGGAGGGGCACAGCGCCTTTGCCACCTTTGAGGAGGCAGCTG
ACGAGGTGTTACAGATCCTCGAGTTATATGCTCGAGTGTATGAGGAGCTCTTGGCAATCCCCGT
CGTGAGAGGAAGGAAGACTGAGAAGGAAAAGTTTGCAGGAGGAGACTATACAACCACACTAGAA
GCCTTCATATCTGCCAGCGGACGCGCTATCCAGGGAGCAACATCACACCATTTAGGCCAGAATT
TCTCCAAAATGTGTGAAATAGTTTTTGAAGATCCCAAGACACCAGGAGAAAAGCAGTTTGCATA
CCAGTGCTCCTGGGGCCTGACAACTCGCACTATCGGTGTGATGATCATGGTCCATGGGGACAAC
ATGGGCTTAGTGTTACCTCCCCGTGTAGCGTCTGTCCAGGTGGTAGTCATTCCCTGTGGAATCA
CGAATACCTTGTCTGAAGAAGACAGAGAGGCCCTGATGGCAAAATGCAATGAGTACAGGAGACG
GCTGCTCGGCGCTGACATCCGAGCTCGAGTCGATCTACGAGACAACTACTCACCAGGCTGGAAG
TTCAACCACTGGGAGCTCAAGGGTGTTCCAGTCAGACTTGAGGTGGGGCCACGTGATATGAAGA
GCTGTCAGTTTGTAGCAGTCAGACGAGATACTGGAGAGAAGCTGACAATTGCTGAAAAGGAGGC
GGAGTCTAAACTGAAAGGGGTTTTGGAAGACATCCAGCTTAACCTTTTCACAAGGGCTTCTGAA
GACCTTAAATCTCACATGGTTGTATCGGATACACTGGAAGACTTTCAGAAGGTGCTAGATTCTG
GGAAGGTTGCACAGATTCCATTCTGTGGGGAAATTGACTGTGAGGACTGGATCAAAAAGACAAC
GGCCAGGGATCAGGATGTGGAACCTGGTGCTCCATCCATGGGAGCCAAAAGCCTTTGCATTCCT
TTCAACCCTCTGTGTGAGCTGCAGCCAGGAGCCATGTGTGTCTGTGGCAAGAATCCTGCCAAGT
TCTACACCTTGTTTGGTCGGAGTTACTGATGGATGAAACAGAAGCCTCTCCCGTCCTTTTTTTA
AAACCAATGATACTAAGATCTCAGATACAGTTTTTCTTTTTCATTTTTTAAAACTTCTAAAAAG
GTCACAAAATAAACAGCTATTCTTATGCCCAAATTAACAGTGGAAAATACTTTTCTGTAAACAG
CCAGGGTAATAAAAACCATGAACTAATTGTA

hide sequence

RefSeq Acc Id:

XM_063272181 ⟹ XP_063128251

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	99,449,848 - 99,503,510 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001019409	(Get FASTA)	NCBI Sequence Viewer
	NP_001416494	(Get FASTA)	NCBI Sequence Viewer
	NP_001416495	(Get FASTA)	NCBI Sequence Viewer
	XP_006250487	(Get FASTA)	NCBI Sequence Viewer
	XP_006250488	(Get FASTA)	NCBI Sequence Viewer
	XP_063128251	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88324	(Get FASTA)	NCBI Sequence Viewer
	AAQ96263	(Get FASTA)	NCBI Sequence Viewer
	EDL94920	(Get FASTA)	NCBI Sequence Viewer
	EDL94921	(Get FASTA)	NCBI Sequence Viewer
	EDL94922	(Get FASTA)	NCBI Sequence Viewer
	EDL94923	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033323.4
	ENSRNOP00000071057.2
	ENSRNOP00000083045.1
	ENSRNOP00000083815.1
	ENSRNOP00000090936.1

RefSeq Acc Id:

NP_001019409 ⟸ NM_001024238

- UniProtKB:

Q6TXE9 (UniProtKB/TrEMBL), A0A8I5ZY25 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAALCLTVNAGNPPLGCRVKVNKRNKSFMLSFLEALLAVEHVKGDVSISVEEGKENLLRVSESV
VFTDTNSILRYLARVAATSGLYGSNLMEHTEIDHWLEFSATKLSSCDVLTSAIKELNHCLSLRT
YLVGNSLTLADLCVWATLKGNAACQEHLRQSKTLVHVNRWYGFLEAQQAFRSVGTKWDASANKA
TGAPDRKQDIGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDD
TNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIEEGKAYVDDTPADEMKAE
PVEKNLQMWEEMKRGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYD
FACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFV
NEGLGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPVNILDAQEEMKEVARHPKNPD
VGLKPVWYSPKVFIEGADAETFSEGEMVTFINWGNINITKIHKNPDGKITSLDAKLNLENKDYK
KTTKITWLAETTQALPVPAVCVTYEHLITKPVLGKDEDFKQYVNKDSKHEELMLGDPCLKDLKK
GDIIQLQRRGFFICDQPYEPVSPYSCKEAPCILIYIPDGHTKEMPTSGSKEKTKVEISKKETGS
APKERPAAAVSAPCAAAEDAAILYSRVAVQGDAVRDLKAKKAPKEDIDAAVKQLLTLKAEYKEK
TGQEYRPGNPPTAAVQTVSTKSPSNTGEYTSLYNKVAAQGELVRKLKAEKAPKAKINDAVECLL
SLKAEYKEKTGKEYVPGQLPASQNSHSSPVSNAKPVGSETPEAKLLFDRVACQGEVVRKLKAEK
ASKDQVDSAVQELLQLKAQYKSLTGIEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQG
KDSSKSQGSGLSSGGAGEGQGPKKQTRLGLEAKKEENLAEWYSQVITKSEMIEYYDVSGCYILR
PWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQGALEKEKNHIADFAPEVAWVTRSGKTELAE
PIAIRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT
FEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTLEAFISASGRAIQGATSH
HLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMIMVHGDNMGLVLPPRVASVQVVV
IPCGITNTLSEEDREALMAKCNEYRRRLLGADIRARVDLRDNYSPGWKFNHWELKGVPVRLEVG
PRDMKSCQFVAVRRDTGEKLTIAEKEAESKLKGVLEDIQLNLFTRASEDLKSHMVVSDTLEDFQ
KVLDSGKVAQIPFCGEIDCEDWIKKTTARDQDVEPGAPSMGAKSLCIPFNPLCELQPGAMCVCG
KNPAKFYTLFGRSY

hide sequence

RefSeq Acc Id:

XP_006250487 ⟸ XM_006250425

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAALCLTVNAGNPPLEALLAVEHVKGDVSISVEEGKENLLRVSESVVFTDTNSILRYLARVAAT
SGLYGSNLMEHTEIDHWLEFSATKLSSCDVLTSAIKELNHCLSLRTYLVGNSLTLADLCVWATL
KGNAACQEHLRQSKTLVHVNRWYGFLEAQQAFRSVGTKWDASANKATGAPDRKQDIGKFVELPG
AEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDV
AMLHIKPDQFTYTSDHFETIMKYAEKLIEEGKAYVDDTPADEMKAEREQRIESRHRKNPVEKNL
QMWEEMKRGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIV
DSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVD
GWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKLRALCKKVIDPVAP
RYVALLKKEVIPVNILDAQEEMKEVARHPKNPDVGLKPVWYSPKVFIEGADAETFSEGEMVTFI
NWGNINITKIHKNPDGKITSLDAKLNLENKDYKKTTKITWLAETTQALPVPAVCVTYEHLITKP
VLGKDEDFKQYVNKDSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPC
ILIYIPDGHTKEMPTSGSKEKTKVEISKKETGSAPKERPAAAVSAPCAAAEDAAILYSRVAVQG
DAVRDLKAKKAPKEDIDAAVKQLLTLKAEYKEKTGQEYRPGNPPTAAVQTVSTKSPSNTGEYTS
LYNKVAAQGELVRKLKAEKAPKAKINDAVECLLSLKAEYKEKTGKEYVPGQLPASQNSHSSPVS
NAKPVGSETPEAKLLFDRVACQGEVVRKLKAEKASKDQVDSAVQELLQLKAQYKSLTGIEYKPV
SATGAEDKDKKKKEKENKSEKQNKPQKQNDGQGKDSSKSQGSGLSSGGAGEGQGPKKQTRLGLE
AKKEENLAEWYSQVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIF
VSQGALEKEKNHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIRLN
QWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAADEVLQILELYARVYEELLAIPVVRGR
KTEKEKFAGGDYTTTLEAFISASGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSW
GLTTRTIGVMIMVHGDNMGLVLPPRVASVQVVVIPCGITNTLSEEDREALMAKCNEYRRRLLGA
DIRARVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTIAEKEAESKL
KGVLEDIQLNLFTRASEDLKSHMVVSDTLEDFQKVLDSGKVAQIPFCGEIDCEDWIKKTTARDQ
DVEPGAPSMGAKSLCIPFNPLCELQPGAMCVCGKNPAKFYTLFGRSY

hide sequence

RefSeq Acc Id:

XP_006250488 ⟸ XM_006250426

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAALCLTVNAGNPPLEALLAVEHVKGDVSISVEEGKENLLRVSESVVFTDTNSILRYLARVAAT
SGLYGSNLMEHTEIDHWLEFSATKLSSCDVLTSAIKELNHCLSLRTYLVGNSLTLADLCVWATL
KGNAACQEHLRQSKTLVHVNRWYGFLEAQQAFRSVGTKWDASANKATGAPDRKQDIGKFVELPG
AEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDV
AMLHIKPDQFTYTSDHFETIMKYAEKLIEEGKAYVDDTPADEMKAEREQRIESRHRKNPVEKNL
QMWEEMKRGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIV
DSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVD
GWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLK
KEVIPVNILDAQEEMKEVARHPKNPDVGLKPVWYSPKVFIEGADAETFSEGEMVTFINWGNINI
TKIHKNPDGKITSLDAKLNLENKDYKKTTKITWLAETTQALPVPAVCVTYEHLITKPVLGKDED
FKQYVNKDSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPCILIYIPD
GHTKEMPTSGSKEKTKVEISKKETGSAPKERPAAAVSAPCAAAEDAAILYSRVAVQGDAVRDLK
AKKAPKEDIDAAVKQLLTLKAEYKEKTGQEYRPGNPPTAAVQTVSTKSPSNTGEYTSLYNKVAA
QGELVRKLKAEKAPKAKINDAVECLLSLKAEYKEKTGKEYVPGQLPASQNSHSSPVSNAKPVGS
ETPEAKLLFDRVACQGEVVRKLKAEKASKDQVDSAVQELLQLKAQYKSLTGIEYKPVSATGAED
KDKKKKEKENKSEKQNKPQKQNDGQGKDSSKSQGSGLSSGGAGEGQGPKKQTRLGLEAKKEENL
AEWYSQVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQGALE
KEKNHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVR
WEFKHPQPFLRTREFLWQEGHSAFATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKF
AGGDYTTTLEAFISASGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTI
GVMIMVHGDNMGLVLPPRVASVQVVVIPCGITNTLSEEDREALMAKCNEYRRRLLGADIRARVD
LRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTIAEKEAESKLKGVLEDI
QLNLFTRASEDLKSHMVVSDTLEDFQKVLDSGKVAQIPFCGEIDCEDWIKKTTARDQDVEPGAP
SMGAKSLCIPFNPLCELQPGAMCVCGKNPAKFYTLFGRSY

hide sequence

Ensembl Acc Id:

ENSRNOP00000071057 ⟸ ENSRNOT00000085214

Ensembl Acc Id:

ENSRNOP00000033323 ⟸ ENSRNOT00000038264

Ensembl Acc Id:

ENSRNOP00000083815 ⟸ ENSRNOT00000105669

Ensembl Acc Id:

ENSRNOP00000090936 ⟸ ENSRNOT00000116204

Ensembl Acc Id:

ENSRNOP00000083045 ⟸ ENSRNOT00000101144

RefSeq Acc Id:	XP_063128251 ⟸ XM_063272181
- Peptide Label:	isoform X3

Protein Domains

Aminoacyl-transfer RNA synthetases class-II family WHEP-TRS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JZI2-F1-model_v2	AlphaFold	A0A0G2JZI2	1-1512	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699099

Promoter ID:

EPDNEW_R9617

Type:

initiation region

Name:

Eprs_1

Description:

glutamyl-prolyl-tRNA synthetase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	103,300,951 - 103,301,011	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310952	AgrOrtholog
BioCyc Gene	G2FUF-16979	BioCyc
BioCyc Pathway	TRNA-CHARGING-PWY [tRNA charging]	BioCyc
BioCyc Pathway Image	TRNA-CHARGING-PWY	BioCyc
Ensembl Genes	ENSRNOG00000002393	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000038264.5	UniProtKB/TrEMBL
	ENSRNOT00000085214.2	UniProtKB/TrEMBL
	ENSRNOT00000101144.1	UniProtKB/TrEMBL
	ENSRNOT00000105669.1	UniProtKB/TrEMBL
	ENSRNOT00000116204.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1050.130	UniProtKB/TrEMBL
	3.30.110.30	UniProtKB/TrEMBL
	3.40.50.620	UniProtKB/TrEMBL
	3.40.50.800	UniProtKB/TrEMBL
	S15/NS1, RNA-binding	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7364865	IMAGE-MGC_LOAD
InterPro	aa-tRNA-synt_IIb_cons-dom	UniProtKB/TrEMBL
	aa-tRNA-synth_I_CS	UniProtKB/TrEMBL
	aa-tRNA-synth_II/BPL/LPL	UniProtKB/TrEMBL
	Aminoacyl-tRNA-synth_II	UniProtKB/TrEMBL
	Anticodon-bd	UniProtKB/TrEMBL
	Anticodon-bd_dom_sf	UniProtKB/TrEMBL
	Glu-tRNA-synth_arc/euk	UniProtKB/TrEMBL
	Glu/Gln-tRNA-synth_Ib_cat-dom	UniProtKB/TrEMBL
	Glu/Gln-tRNA-synth_Ib_codon-bd	UniProtKB/TrEMBL
	Glu/Gln-tRNA-synth_Ic	UniProtKB/TrEMBL
	Glu_tRNA_lig_a-bdl	UniProtKB/TrEMBL
	Glutathione-S-Trfase_C_sf	UniProtKB/TrEMBL
	Pro-tRNA-synth_IIa_arc-type	UniProtKB/TrEMBL
	Pro-tRNA_synth_II	UniProtKB/TrEMBL
	Pro-tRNA_synth_II_C	UniProtKB/TrEMBL
	ProRS_core_arch_euk	UniProtKB/TrEMBL
	Rbsml_L25/Gln-tRNA_synth_b-brl	UniProtKB/TrEMBL
	Ribosomal_L25/Gln-tRNA_synth	UniProtKB/TrEMBL
	Rossmann-like_a/b/a_fold	UniProtKB/TrEMBL
	S15_NS1_RNA-bd	UniProtKB/TrEMBL
	tRNA-synt_1c_C2	UniProtKB/TrEMBL
	WHEP-TRS	UniProtKB/TrEMBL
KEGG Report	rno:289352	UniProtKB/TrEMBL
MGC_CLONE	MGC:109566	IMAGE-MGC_LOAD
NCBI Gene	289352	ENTREZGENE
PANTHER	BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE	UniProtKB/TrEMBL
	PTHR43382	UniProtKB/TrEMBL
Pfam	HGTP_anticodon	UniProtKB/TrEMBL
	ProRS-C_1	UniProtKB/TrEMBL
	tRNA-synt_1c	UniProtKB/TrEMBL
	tRNA-synt_1c_C	UniProtKB/TrEMBL
	tRNA-synt_1c_C2	UniProtKB/TrEMBL
	tRNA-synt_2b	UniProtKB/TrEMBL
	WHEP-TRS	UniProtKB/TrEMBL
PhenoGen	Eprs1	PhenoGen
PRINTS	TRNASYNTHGLU	UniProtKB/TrEMBL
PROSITE	AA_TRNA_LIGASE_I	UniProtKB/TrEMBL
	AA_TRNA_LIGASE_II	UniProtKB/TrEMBL
	WHEP_TRS_1	UniProtKB/TrEMBL
	WHEP_TRS_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002393	RatGTEx
SMART	ProRS-C_1	UniProtKB/TrEMBL
	WHEP-TRS	UniProtKB/TrEMBL
Superfamily-SCOP	Class II aaRS ABD-related	UniProtKB/TrEMBL
	GST_C_like	UniProtKB/TrEMBL
	Nucleotidylyl transferase	UniProtKB/TrEMBL
	Pro-tRNA_synth_II_C	UniProtKB/TrEMBL
	Ribosomal_L25rel	UniProtKB/TrEMBL
	S15/NS1_bind	UniProtKB/TrEMBL
	SSF55681	UniProtKB/TrEMBL
UniProt	A0A0G2JZI2_RAT	UniProtKB/TrEMBL
	A0A8I5ZY25	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G8C4_RAT	UniProtKB/TrEMBL
	A0A8I6GJ92	ENTREZGENE, UniProtKB/TrEMBL
	Q6TXE9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-10-13	Eprs1	glutamyl-prolyl-tRNA synthetase 1	Eprs	glutamyl-prolyl-tRNA synthetase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2021-03-09	Eprs	glutamyl-prolyl-tRNA synthetase	LOC108351325	proline--tRNA ligase-like	Data merged from RGD:11449343	737654	PROVISIONAL
2016-08-02	LOC108351325	proline--tRNA ligase-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-12-06	Eprs	glutamyl-prolyl-tRNA synthetase	Eprs_predicted	glutamyl-prolyl-tRNA synthetase (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Eprs_predicted	glutamyl-prolyl-tRNA synthetase (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways