Nudt12 (nudix hydrolase 12) - Rat Genome Database

Name: Nudt12
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Nudt12 (nudix hydrolase 12) Rattus norvegicus

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Symbol:

Nudt12

Name:

nudix hydrolase 12

RGD ID:

1310902

Description:

Predicted to enable metal ion binding activity; phosphodiesterase decapping endonuclease activity; and pyrophosphatase activity. Predicted to be involved in RNA decapping; nicotinamide nucleotide metabolic process; and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Predicted to be active in peroxisome. Orthologous to human NUDT12 (nudix hydrolase 12); PARTICIPATES IN niacin metabolic pathway; monoterpenoid biosynthetic pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC367323; NAD-capped RNA hydrolase NUDT12; nudix (nucleoside diphosphate linked moiety X)-type motif 12; nudix-type motif 12; peroxisomal NADH pyrophosphatase NUDT12

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NUDT12 (nudix hydrolase 12)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Nudt12 (nudix hydrolase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nudt12 (nudix hydrolase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NUDT12 (nudix hydrolase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NUDT12 (nudix hydrolase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nudt12 (nudix hydrolase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NUDT12 (nudix hydrolase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NUDT12 (nudix hydrolase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nudt12 (nudix hydrolase 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NUDT12 (nudix hydrolase 12)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nudt12 (nudix hydrolase 12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nudt12 (nudix (nucleoside diphosphate linked moiety X)-type motif 12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NPY1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ndx-9	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	nudt12	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	106,188,930 - 106,202,340 (-)	NCBI		GRCr8
mRatBN7.2	9	98,741,627 - 98,755,039 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	98,742,360 - 98,755,039 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	107,157,934 - 107,170,738 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	112,285,705 - 112,298,509 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	110,629,306 - 110,642,104 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	105,680,603 - 105,693,374 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	105,680,670 - 105,693,357 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	105,282,066 - 105,294,901 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	97,551,943 - 97,565,919 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	97,763,808 - 97,773,230 (-)	NCBI
Celera	9	96,183,688 - 96,196,456 (-)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

clotrimazole (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dibenzofurans (ISO)

dioxygen (EXP)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

gentamycin (EXP)

glafenine (EXP)

gold atom (ISO)

gold(0) (ISO)

hydrogen peroxide (ISO)

hydroxyurea (ISO)

indometacin (EXP)

Licochalcone B (ISO)

methapyrilene (EXP)

methimazole (EXP)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

ozone (ISO)

p-anisidine (ISO)

paclitaxel (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

resveratrol (EXP)

SB 431542 (ISO)

silicon dioxide (EXP)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

circadian regulation of gene expression (ISO)

mRNA catabolic process (ISO)

mRNA methylguanosine-cap decapping (ISO)

NAD catabolic process (IBA,ISO)

NAD-cap decapping (ISO)

NADH metabolic process (IBA)

NADP catabolic process (IBA,ISO)

Cellular Component

cytoplasm (ISO)

nucleus (IEA,ISO)

peroxisome (IBA,ISO)

Molecular Function

magnesium ion binding (ISO)

NAD+ diphosphatase activity (ISO)

NADH pyrophosphatase activity (IBA,ISO)

phosphodiesterase decapping endonuclease activity (ISO)

protein binding (ISO)

RNA NAD-cap (NMN-forming) hydrolase activity (ISO)

zinc ion binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

monoterpenoid biosynthetic pathway (IEA)

niacin metabolic pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12790796	PMID:31101919

Genomics

Comparative Map Data

Nudt12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	106,188,930 - 106,202,340 (-)	NCBI		GRCr8
mRatBN7.2	9	98,741,627 - 98,755,039 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	98,742,360 - 98,755,039 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	107,157,934 - 107,170,738 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	112,285,705 - 112,298,509 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	110,629,306 - 110,642,104 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	105,680,603 - 105,693,374 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	105,680,670 - 105,693,357 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	105,282,066 - 105,294,901 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	97,551,943 - 97,565,919 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	97,763,808 - 97,773,230 (-)	NCBI
Celera	9	96,183,688 - 96,196,456 (-)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

NUDT12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	103,548,855 - 103,562,789 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	103,548,855 - 103,562,790 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	102,884,556 - 102,898,490 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	102,912,455 - 102,926,389 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	102,912,455 - 102,926,389	NCBI
Celera	5	98,832,394 - 98,846,327 (-)	NCBI		Celera
Cytogenetic Map	5	q21.2	NCBI
HuRef	5	98,066,154 - 98,080,094 (-)	NCBI		HuRef
CHM1_1	5	102,317,764 - 102,331,705 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	104,057,169 - 104,071,102 (-)	NCBI		T2T-CHM13v2.0

Nudt12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	59,307,104 - 59,320,317 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	59,306,613 - 59,320,367 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	59,000,107 - 59,013,367 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	58,999,618 - 59,013,372 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	59,140,824 - 59,152,745 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	58,686,732 - 58,698,653 (-)	NCBI		MGSCv36	mm8
Celera	17	63,340,740 - 63,352,661 (-)	NCBI		Celera
Cytogenetic Map	17	D	NCBI
cM Map	17	30.64	NCBI

Nudt12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	10,459,638 - 10,474,124 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	10,459,644 - 10,474,124 (+)	NCBI	ChiLan1.0	ChiLan1.0

NUDT12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	98,832,811 - 98,846,787 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	96,986,459 - 97,000,835 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	98,903,740 - 98,917,763 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	104,603,701 - 104,617,927 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	104,601,373 - 104,617,925 (-)	Ensembl	panpan1.1		panPan2

NUDT12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	7,693,903 - 7,708,930 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	7,696,505 - 7,724,769 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	9,096,599 - 9,111,624 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	7,580,872 - 7,595,974 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	7,580,961 - 7,595,765 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	7,523,258 - 7,538,243 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	7,541,652 - 7,556,628 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	7,701,088 - 7,716,081 (+)	NCBI		UU_Cfam_GSD_1.0

Nudt12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	162,779,449 - 162,793,749 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936523	964,813 - 979,250 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936523	964,858 - 979,118 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NUDT12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	109,045,592 - 109,059,616 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	109,044,946 - 109,059,721 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	113,204,432 - 113,216,169 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NUDT12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	6,980,848 - 6,995,193 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	6,978,704 - 6,994,660 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666036	7,322,532 - 7,336,519 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nudt12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	21,701,158 - 21,717,123 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	21,702,453 - 21,716,805 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nudt12
105 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1031
Count of miRNA genes:	313
Interacting mature miRNAs:	431
Transcripts:	ENSRNOT00000066968
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	92491589	100929786	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	77813894	101597663	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	77813894	111552878	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	79271511	102910209	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat

Markers in Region

RH140172

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	98,742,400 - 98,742,590 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	105,680,711 - 105,680,900	NCBI	Rnor6.0
Rnor_5.0	9	105,282,174 - 105,282,363	UniSTS	Rnor5.0
RGSC_v3.4	9	97,551,984 - 97,552,173	UniSTS	RGSC3.4
Celera	9	96,183,729 - 96,183,918	UniSTS
Cytogenetic Map	9	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066968 ⟹ ENSRNOP00000061974

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	98,742,360 - 98,755,039 (-)	Ensembl
Rnor_6.0 Ensembl	9	105,680,670 - 105,693,357 (-)	Ensembl

RefSeq Acc Id:

NM_001109010 ⟹ NP_001102480

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	106,189,661 - 106,202,340 (-)	NCBI
mRatBN7.2	9	98,742,360 - 98,755,039 (-)	NCBI
Rnor_6.0	9	105,680,670 - 105,693,357 (-)	NCBI
Rnor_5.0	9	105,282,066 - 105,294,901 (-)	NCBI
RGSC_v3.4	9	97,551,943 - 97,565,919 (-)	RGD
Celera	9	96,183,688 - 96,196,456 (-)	RGD

Sequence:

show sequence

CCCCGGAAGTCCGGAAGGCTGCCTCCAGCACTGGGAAAACTGACAACTGAGTTTGACGCGGAGT
CTTCTGTCCCGGCCGCGGTTTCTTTGGTCACTCTTGGGAAGAAATGTCTTCTGTCAAAAGAAAT
CCCAAAAGGGAAATAATTTCTGAACTCCACAGTTCAGCCGCAGAAGGAGACGTCGCGAAGTTAG
CAGGAATTCTCAGTCATTCTCCATCTCTTCTCAACGAGACTTCTGAAAACGGATGGACTGCTTT
AATGTATGCCGCCAGGAACGGGCATCCGGATGCTGTCCAGTTTCTGCTTGAGAAAGGATGTGAC
AGATCGTCTGTCAATAAATCGAGGCAAACCGCCCTGGATATTGCGGTATTTTGGGGTTATAAGC
ATATAGCTAACTTATTGGCTAACGCCAAAGGAGGGAAGAAGCCCTGGTTCCTAACCAGTGACGT
AGACGGATGTGAAAATTATTTTAGCAGAACACTGCTGGACCGGAGGAGTGACAAAAGGACTAAT
TCTGACTGGCTGCAAGCTAAAGAGAGCCACCCCACCACAGTTTATATCCTTTTCTCTGACTTGA
ACCCCCTGGTTACTCTAGGTGGTAATAAAGAAAGCTCGCAGCAGCCGGAAGTCAGGCTCTGCCA
GCTGAACTACGCGGACATAAAGGATTACTTGGCTCAGCCTGAGAAGATCACCTTGGTGTTCCTT
GGAGTCGAGCTTGAAATGAGAAAAGGCTCGCACGCCCATGCCGGCGGAGTCCCAGAGGGAGAGG
AGGATGGTTTGGTTGCATGGTTTGTCCTCGGCATAGAACCTGGTGCAGCTGAGGAGTTTAAGCA
AAGACACGAAAACTGTTACTTTCTCCACCCGCCAATGCCCGCTCTTCTGCAGTTGAAAGAAAAA
GAGGCTGGGGTCGTGGCTCAAGCAAGATCGGTGCTTGCGTGGCACAGTCGATACAAGTTCTGCC
CAACCTGTGGCAGCACAACTAAAATTGAAGAAGGTGGCTACAAAAGAGTGTGTGTTCGAGAAAA
CTGCCCTAGTCTCCATGGCGTCCACAACACATCTTACCCGAGAGTTGATCCAGTCGTAATTATG
CAGGTCATTCATCCGGATGGAACCAAGTGTCTTTTAGGCCGGCAAAAGAGATTTCCCCCCGGCA
TGTTCACTTGTCTCGCTGGATTTATCGAGCCTGGGGAGACAATAGAAGACGCTGTGCGGAGAGA
GGTAGGAGAGGAAAGTGGAGTCAAAGTTGGCCATGTTCAGTATGTCTCTTGTCAGCCGTGGCCA
ATGCCCTCCTCTTTAATGATTGGCTGTTTAGCTGTGGCAGTGTCTACAGAAATTAAAGTTGACA
AGAATGAAATAGAGGATGCCCGATGGTTCACTAGAGAACAGGTGGTGGATGTTCTTACCAAAGG
GAAGCAGCAAGCATTCTTCGTGCCACCAAGCCGAGCTATTGCACATCAGTTAATCAAGCACTGG
GTTGGCATGAACCCCAGTCTCTAAATGAAAAATGCTAGCCTCTGTCGAGTATCACCTAATTTTT
AACACTACTTATATATCAAGAAAGAGTAGATATATGTACTGATCTTTAGAACCTTTTAACGTAA
AACTTGGGAGCTTCAAAAATGTTTTCAGGTTCTTTCCATTATTAATTACAAAATTCACAGTTTT
ATAAACTGGAATGATGCCTCAAATTTTTTCATAAATTCGGAGGCAGCCTGTGAACATTTTTGTT
GTGTTTCCCAATTTTATCTCAGAAAACTAATTGTTTGTCTACCAAGAAAGATCATGTTGGGATG
AAGTGTGCTCCAGAAATGAGGTAAACCTTAATCTTTGTAAAGAGTGGACCCCTTGTTGGAGATA
TTTGTCAAGATAACTTTGGTGACTTTTGAGCGTCCGTAATATTTAATCATCTAATTATTATCTT
CCTGGTCTTTTGTCTACTGGTAGTACTGTTGTACTATTAGTCCTAGTTTGATATGACCAGTGTT
GAAAATTATTTTATAATTATAATAATTAATGTCAGTATTCACTTATGAAATACAGTAGCTTGGC
ACCAACCTTTCTCATCAGATCCTCAGAGCCTTAAGTAGCACACCTTAGAATGGGGCTGCTCAGC
TCTATGGATAGTTAGTGCAGTGTTTCAGTTTTACAATATAGATGCATATATTTTACTTGATTGT
CCTGCAGTTGTCTTAACTACATAAATTTACATATGTTGCCTCTTTACTAGTCTGGTAGAACTTG
AAGAGAGCATGAACACAATAGATGTTGAACATCATCATTTTAATAGTATGCATCTAAGACCTAG
ATCTCCAGTGCAGTAGGAAACAGAAGCTATTACTAAAAGTGTCTGTAGACTAAGGAGCCAGAAA
AATGGCTCTGTCATTAAGGTGCTTGCTGTGCAAGCATGAGTCCTTGAGTTCAGATTCTCTGCAA
CGGTTTCAAAAGCTGTGTTCAGTACCATCCAACTCTAACCCCAAACCTAAAGAGGCAGAGATGT
GAGTATCCCGAGGGCTTGTTGGCCAGTCAGTCTGGTGAATCACTAATTGGAATAACAGACCTTG
TCTCAAAACGTAAGGTGGAAAGATGGAGATGGATCCAATGTGAAGAGCACCTGTCATTCCTGTG
GAGGACCAGGGTTTAGTTCCCAAGATCCTCCTCAGGCAGGACACAACCCCCCTGCAGCTACAAC
TTCAGGGGATCCAACACCCTCTTCTGGCCTCTGCAAGCATCTGCATGAGCATTTAATGAAGACA
CAGACACATAAATAGAAAGATTGAAGAATACACCTGACTTCTGTCTCTGCCCTACACCCCCCTA
CACACACACACACACACGTGTGTGCACACATTCCCACACACATGTGTGCACACATTCCCACACA
CAGGCACACACACACAATAAGTGAAAAAACTGATGATAGGAAGAATGAACTTAGCTTATCAGAT
GTTTTTAATTGAAAATTTAAGTATAAGGCTTAACATTTATTTAACCTAAATAATGTAACTTTCT
TAGAGAATTTACTTTACTAATGAATACTGTTGCTTAGCAGTTAATGAAGGCTTTATTAAAATCA
GTGCTTTGACCAAAATAGGACCTACACAGAACATTTATATATGTGGTAATTTGGACCTATATAA
TTATGTTAAAAGTTATACTTTGAGTATTATGAAATATGATCAGCTAAAGTTCATCTTTGCTCCA
AACATGCTTTTAATATTTGTCTATTCTTATATAATGTTGTAAACTCTCCACGTCCATAATGTTA
AATAGCAAAGTAAAATACACATGTTAAAAATGTACAAATTTAGTTTCAAATTCCTACTGTACTT
GGGAAAATTAGTGAGTAAATTACTGTGTTTAATAATCATTCCTAAGTTTTGACATTGGAGAGGT
GAGGATGCACTGTAAATTTGAAAGGTTGCTTTCTTAGCCAGTTCTGGAGGGGCATTAGATACTA
ATGTAACAACACATTAAATGTACTCTGTGTATTGTATGTGTTTTAAATGTTTTGATGAATTTTT
TGACACAAGTATAAATTTTAGCCTGTATCATTGGTTTATTAATGGTGTTCATAAGCAAATGTAC
AAATCTCTCTCTTTTGTTTTTGAGCTTTGATTTCACTGTAGCCCAACGTATATAATTCTTGGAT
TACAGGTGGGATCCACCATATCTGGCAAAAGAATTAAAATTTTGATTTGGTGCACAAATGTAGC
CCAAGAGTAATTTACTTGTGCAATGCCTCCAAGGTATTGGGTTTAAACCAAAGCTTTTTTTTAA
TGACTATTTTGAATCTTAAGTTTTGTAGTTTGGGGTAAAATGTGTCAACAAATGGGTTTGTGAG
ATCTTACGTTGTGAATAATTAAAGTCTTCAGACTTAAAGC

hide sequence

RefSeq Acc Id:

XM_006245588 ⟹ XP_006245650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	106,188,930 - 106,202,332 (-)	NCBI
mRatBN7.2	9	98,741,627 - 98,755,031 (-)	NCBI
Rnor_6.0	9	105,680,603 - 105,693,374 (-)	NCBI
Rnor_5.0	9	105,282,066 - 105,294,901 (-)	NCBI

Sequence:

show sequence

CGAGGACAGTGGCCCTCCCCCGGAAGTCCGGAAGGCTGCCTCCAGCACTGGGAAAACTGACAAC
TGAGTTTGACGCGGAGTCTTCTGTCCCGGCCGCGGTTTCTTTGGTCACTCTTGGAAATGTCTTC
TGTCAAAAGAAATCCCAAAAGGGAAATAATTTCTGAACTCCACAGTTCAGCCGCAGAAGGAGAC
GTCGCGAAGTTAGCAGGAATTCTCAGTCATTCTCCATCTCTTCTCAACGAGACTTCTGAAAACG
GATGGACTGCTTTAATGTATGCCGCCAGGAACGGGCATCCGGATGCTGTCCAGTTTCTGCTTGA
GAAAGGATGTGACAGATCGTCTGTCAATAAATCGAGGCAAACCGCCCTGGATATTGCGGTATTT
TGGGGTTATAAGCATATAGCTAACTTATTGGCTAACGCCAAAGGAGGGAAGAAGCCCTGGTTCC
TAACCAGTGACGTAGACGGATGTGAAAATTATTTTAGCAGAACACTGCTGGACCGGAGGAGTGA
CAAAAGGACTAATTCTGACTGGCTGCAAGCTAAAGAGAGCCACCCCACCACAGTTTATATCCTT
TTCTCTGACTTGAACCCCCTGGTTACTCTAGGTGGTAATAAAGAAAGCTCGCAGCAGCCGGAAG
TCAGGCTCTGCCAGCTGAACTACGCGGACATAAAGGATTACTTGGCTCAGCCTGAGAAGATCAC
CTTGGTGTTCCTTGGAGTCGAGCTTGAAATGAGAAAAGGCTCGCACGCCCATGCCGGCGGAGTC
CCAGAGGGAGAGGAGGATGGTTTGGTTGCATGGTTTGTCCTCGGCATAGAACCTGGTGCAGCTG
AGGAGTTTAAGCAAAGACACGAAAACTGTTACTTTCTCCACCCGCCAATGCCCGCTCTTCTGCA
GTTGAAAGAAAAAGAGGCTGGGGTCGTGGCTCAAGCAAGATCGGTGCTTGCGTGGCACAGTCGA
TACAAGTTCTGCCCAACCTGTGGCAGCACAACTAAAATTGAAGAAGGTGGCTACAAAAGAGTGT
GTGTTCGAGAAAACTGCCCTAGTCTCCATGGCGTCCACAACACATCTTACCCGAGAGTTGATCC
AGTCGTAATTATGCAGGTCATTCATCCGGATGGAACCAAGTGTCTTTTAGGCCGGCAAAAGAGA
TTTCCCCCCGGCATGTTCACTTGTCTCGCTGGATTTATCGAGCCTGGGGAGACAATAGAAGACG
CTGTGCGGAGAGAGGTAGGAGAGGAAAGTGGAGTCAAAGTTGGCCATGTTCAGTATGTCTCTTG
TCAGCCGTGGCCAATGCCCTCCTCTTTAATGATTGGCTGTTTAGCTGTGGCAGTGTCTACAGAA
ATTAAAGTTGACAAGAATGAAATAGAGGATGCCCGATGGTTCACTAGAGAACAGGTGGTGGATG
TTCTTACCAAAGGGAAGCAGCAAGCATTCTTCGTGCCACCAAGCCGAGCTATTGCACATCAGTT
AATCAAGCACTGGGTTGGCATGAACCCCAGTCTCTAAATGAAAAATGCTAGCCTCTGTCGAGTA
TCACCTAATTTTTAACACTACTTATATATCAAGAAAGAGTAGATATATGTACTGATCTTTAGAA
CCTTTTAACGTAAAACTTGGGAGCTTCAAAAATGTTTTCAGGTTCTTTCCATTATTAATTACAA
AATTCACAGTTTTATAAACTGGAATGATGCCTCAAATTTTTTCATAAATTCGGAGGCAGCCTGT
GAACATTTTTGTTGTGTTTCCCAATTTTATCTCAGAAAACTAATTGTTTGTCTACCAAGAAAGA
TCATGTTGGGATGAAAGTGTGCTCCAGAAATGAGGTAAACCTTAATCTTTGTAAAGAGTGGACC
CCTTGTTGGAGATATTTGTCAAGATAACTTTGGTGACTTTTGAGCGTCCGTAATATTTAATCAT
CTAATTATTATCTTCCTGGTCTTTTGTCTACTGGTAGTTACTGTTGTGACTATTAGTCCTAGTT
TGTATGACCAGTGTTGAAAATTATTTTATAGTTATAATAATTAATGTCAGTATTCACTTATGAA
ATACAGTAGCTTGGCACCAACCTTTCTCATCAGATCCTCAGAGCCTTAAGTAGCACACCTTAGA
ATGGGGCTGCTCAGCTCTATGGATAGTTAGTGCAGTGTTTCAGTTTTACAATATAGATGCATAT
ATTTTACTTGATTGTCCTGCAGTTGTCTTAACTACATAAATTTACATATGTTGCCTCTTTACTA
GTCTGGTAGAACTTGAAGAGAGCATGAACACAATAGATGTTGAACATCATCATTTTAATAGTAT
GCATCTAAGACCTAGATCTCCAGTGCAGTAGGAAACAGAAGCTATTACTAAAAGTGTCTGTAGA
CTAAGGAGCCAGAAAAATGGCTCTGTCATTAAGGTGCTTGCTGTGCAAGCATGAGTCCTTGAGT
TCAGATTCTCTGCAACGGTTTCAAAAGCTGTGTTCAGTACCATCCAACTCTAACCCCAAACCTA
AAGAGGCAGAGATGTGAGTATCCCGAGGGCTTGTTGGCCAGTCAGTCTGGTGAATCACTAATTG
GAATAACAGACCTTGTCTCAAAACGTAAGGTGGAAAGATGGAGATGGATCCAATGTGAAGAGCA
CCTGTCATTCCTGTGGAGGACCAGGGTTTAGTTCCCAAGATCCTCCTCAGGCAGGACACAACCC
CCCTGCAGCTACAACTTCAGGGGATCCAACACCCTCTTCTGGCCTCTGCAAGCATCTGCATGAG
CATTTAATGAAGACACAGACACATAAATAGAAAGATTGAAGAATACACCTGACTTCTGTCTCTG
CCCTACACCCCCCTACACACACACACACACACGTGTGTGCACACATTCCCACACACATGTGTGC
ACACATTCCCACACACAGGCACACACACACAATAAGTGAAAAAACTGATGATAGGAAGAATGAA
CTTAGCTTATCAGATGTTTTTAATTGAAAATTTAAGTATAAGGCTTAACATTTATTTAACCTAA
ATAATGTAACTTTCTTAGAGAATTTACTTTACTAATGAATACTGTTGCTTAGCAGTTAATGAAG
GCTTTATTAAAATCAGTGCTTTGACCAAAATAGGACCTACACAGAACATTTATATATGTGGTAA
TTTGGACCTATATAATTATGTTAAAAGTTATACTTTGAGTATTATGAAATATGATCAGCTAAAG
TTCATCTTTGCTCCAAACATGCTTTTAATATTTGTCTATTCTTATATAATGTTGTAAACTCTCC
ACGTCCATAATGTTAAATAGCAAAGTAAAATACACATGTTAAAAATGTACAAATTTAGTTTCAA
ATTCCTACTGTACTTGGGAAAATTAGTGAGTAAATTACTGTGTTTAATAATCATTCCTAAGTTT
TGACATTGGAGAGGTGAGGATGCACTGTAAATTTGAAAGGTTGCTTTCTTAGCCAGTTCTGGAG
GGGCATTAGATACTAATGTAACAACACATTAAATGTACTCTGTGTATTGTATGTGTTTTAAATG
TTTTGATGAATTTTTTGACACAAGTATAAATTTTAGCCTGTATCATTGGTTTATTAATGGTGTT
CATAAGCAAATGTACAAATCTCTCTCTTTTGTTTTTGAGCTTTGATTTCACTGTAGCCCAACGT
ATATAATTCTTGGATTACAGGTGGGATCCACCATATCTGGCAAAAGAATTAAAATTTTGATTTG
GTGCACAAATGTAGCCCAAGAGTAATTTACTTGTGCAATGCCTCCAAGGTATTGGGTTTAAACC
AAAGCTTTTTTTTAATGACTATTTTGAATCTTAAGTTTTGTAGTTTGGGGTAAAATGTGTCAAC
AAATGGGTTTGTGAGATCTTACGTTGTGAATAATTAAAGTCTTCAGACTTAAAGCTATGTATGT
AGCACAGTCTACCTTAATTACTTGTCTACTGTGGTCAATATTTGCACTTTGAAATATT

hide sequence

RefSeq Acc Id:

XM_039084014 ⟹ XP_038939942

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	106,188,930 - 106,202,321 (-)	NCBI
mRatBN7.2	9	98,741,627 - 98,752,865 (-)	NCBI

RefSeq Acc Id:

XM_039084015 ⟹ XP_038939943

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	106,188,930 - 106,202,332 (-)	NCBI
mRatBN7.2	9	98,741,627 - 98,755,031 (-)	NCBI

RefSeq Acc Id:

XM_063267546 ⟹ XP_063123616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	106,188,930 - 106,202,309 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102480	(Get FASTA)	NCBI Sequence Viewer
	XP_006245650	(Get FASTA)	NCBI Sequence Viewer
	XP_038939942	(Get FASTA)	NCBI Sequence Viewer
	XP_038939943	(Get FASTA)	NCBI Sequence Viewer
	XP_063123616	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL91846	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061974.2

RefSeq Acc Id:

NP_001102480 ⟸ NM_001109010

- UniProtKB:

D4A2H8 (UniProtKB/TrEMBL), A6JR91 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSVKRNPKREIISELHSSAAEGDVAKLAGILSHSPSLLNETSENGWTALMYAARNGHPDAVQF
LLEKGCDRSSVNKSRQTALDIAVFWGYKHIANLLANAKGGKKPWFLTSDVDGCENYFSRTLLDR
RSDKRTNSDWLQAKESHPTTVYILFSDLNPLVTLGGNKESSQQPEVRLCQLNYADIKDYLAQPE
KITLVFLGVELEMRKGSHAHAGGVPEGEEDGLVAWFVLGIEPGAAEEFKQRHENCYFLHPPMPA
LLQLKEKEAGVVAQARSVLAWHSRYKFCPTCGSTTKIEEGGYKRVCVRENCPSLHGVHNTSYPR
VDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDAVRREVGEESGVKVGHVQY
VSCQPWPMPSSLMIGCLAVAVSTEIKVDKNEIEDARWFTREQVVDVLTKGKQQAFFVPPSRAIA
HQLIKHWVGMNPSL

hide sequence

RefSeq Acc Id:	XP_006245650 ⟸ XM_006245588
- Peptide Label:	isoform X1
- UniProtKB:	D4A2H8 (UniProtKB/TrEMBL), A6JR91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSVKRNPKREIISELHSSAAEGDVAKLAGILSHSPSLLNETSENGWTALMYAARNGHPDAVQF LLEKGCDRSSVNKSRQTALDIAVFWGYKHIANLLANAKGGKKPWFLTSDVDGCENYFSRTLLDR RSDKRTNSDWLQAKESHPTTVYILFSDLNPLVTLGGNKESSQQPEVRLCQLNYADIKDYLAQPE KITLVFLGVELEMRKGSHAHAGGVPEGEEDGLVAWFVLGIEPGAAEEFKQRHENCYFLHPPMPA LLQLKEKEAGVVAQARSVLAWHSRYKFCPTCGSTTKIEEGGYKRVCVRENCPSLHGVHNTSYPR VDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDAVRREVGEESGVKVGHVQY VSCQPWPMPSSLMIGCLAVAVSTEIKVDKNEIEDARWFTREQVVDVLTKGKQQAFFVPPSRAIA HQLIKHWVGMNPSL hide sequence

Ensembl Acc Id:

ENSRNOP00000061974 ⟸ ENSRNOT00000066968

RefSeq Acc Id:	XP_038939943 ⟸ XM_039084015
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038939942 ⟸ XM_039084014
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063123616 ⟸ XM_063267546
- Peptide Label:	isoform X2

Protein Domains

Nudix hydrolase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A2H8-F1-model_v2	AlphaFold	D4A2H8	1-462	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696893

Promoter ID:

EPDNEW_R7417

Type:

multiple initiation site

Name:

Nudt12_1

Description:

nudix hydrolase 12

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	105,693,331 - 105,693,391	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310902	AgrOrtholog
BioCyc Gene	G2FUF-26574	BioCyc
Ensembl Genes	ENSRNOG00000022576	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066968.3	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
	3.90.79.20	UniProtKB/TrEMBL
	Nucleoside Triphosphate Pyrophosphohydrolase	UniProtKB/TrEMBL
InterPro	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
	NAD-cap_RNA_hydrolase_NudC	UniProtKB/TrEMBL
	NADH_PPase-like_N	UniProtKB/TrEMBL
	NudC-like_C	UniProtKB/TrEMBL
	NUDIX_hydrolase_CS	UniProtKB/TrEMBL
	NUDIX_hydrolase_dom	UniProtKB/TrEMBL
	NUDIX_hydrolase_dom-like	UniProtKB/TrEMBL
	Znr_NADH_PPase	UniProtKB/TrEMBL
KEGG Report	rno:367323	UniProtKB/TrEMBL
NCBI Gene	367323	ENTREZGENE
PANTHER	NAD-CAPPED RNA HYDROLASE NUDT12	UniProtKB/TrEMBL
	NUDIX HYDROLASE, NUDC SUBFAMILY	UniProtKB/TrEMBL
Pfam	Ank_2	UniProtKB/TrEMBL
	NUDIX	UniProtKB/TrEMBL
	NUDIX-like	UniProtKB/TrEMBL
	zf-NADH-PPase	UniProtKB/TrEMBL
PhenoGen	Nudt12	PhenoGen
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
	NUDIX	UniProtKB/TrEMBL
	NUDIX_BOX	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000022576	RatGTEx
SMART	ANK	UniProtKB/TrEMBL
Superfamily-SCOP	ANK	UniProtKB/TrEMBL
	NUDIX_hydrolase	UniProtKB/TrEMBL
UniProt	A6JR91	ENTREZGENE, UniProtKB/TrEMBL
	D4A2H8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-10	Nudt12	nudix hydrolase 12	Nudt12	nudix (nucleoside diphosphate linked moiety X)-type motif 12	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Nudt12	nudix (nucleoside diphosphate linked moiety X)-type motif 12	Nudt12_predicted	nudix (nucleoside diphosphate linked moiety X)-type motif 12 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Nudt12_predicted	nudix (nucleoside diphosphate linked moiety X)-type motif 12 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)