Srp14 (signal recognition particle 14) - Rat Genome Database

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Gene: Srp14 (signal recognition particle 14) Rattus norvegicus
Analyze
Symbol: Srp14
Name: signal recognition particle 14
RGD ID: 1308506
Description: Predicted to enable 7S RNA binding activity and endoplasmic reticulum signal peptide binding activity. Predicted to be involved in protein targeting to ER. Predicted to be located in nucleus. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP14 (signal recognition particle 14); INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC296076; signal recognition particle 14 kDa protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83125,896,128 - 125,899,819 (-)NCBIGRCr8
mRatBN7.23105,442,184 - 105,445,875 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,442,198 - 105,445,859 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,108,904 - 109,112,595 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03117,704,444 - 117,708,135 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,364,827 - 115,368,518 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,245,936 - 110,249,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,245,936 - 110,249,627 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03116,791,591 - 116,795,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43104,906,842 - 104,910,533 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13104,803,269 - 104,851,219 (-)NCBI
Celera3104,359,390 - 104,363,081 (-)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18089836   PMID:22658674   PMID:22681889   PMID:22720776   PMID:23376485   PMID:25931508  


Genomics

Comparative Map Data
Srp14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83125,896,128 - 125,899,819 (-)NCBIGRCr8
mRatBN7.23105,442,184 - 105,445,875 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,442,198 - 105,445,859 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,108,904 - 109,112,595 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03117,704,444 - 117,708,135 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,364,827 - 115,368,518 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,245,936 - 110,249,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,245,936 - 110,249,627 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03116,791,591 - 116,795,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43104,906,842 - 104,910,533 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13104,803,269 - 104,851,219 (-)NCBI
Celera3104,359,390 - 104,363,081 (-)NCBICelera
Cytogenetic Map3q35NCBI
SRP14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,035,690 - 40,039,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,035,690 - 40,039,181 (-)EnsemblGRCh38hg38GRCh38
GRCh371540,327,891 - 40,331,403 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,115,183 - 38,118,681 (-)NCBINCBI36Build 36hg18NCBI36
Build 341538,115,534 - 38,118,681NCBI
Celera1517,091,190 - 17,094,604 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,172,039 - 17,175,465 (-)NCBIHuRef
CHM1_11540,447,562 - 40,450,990 (-)NCBICHM1_1
T2T-CHM13v2.01537,841,027 - 37,844,472 (-)NCBIT2T-CHM13v2.0
Srp14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,306,324 - 118,310,177 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,306,331 - 118,310,192 (-)EnsemblGRCm39 Ensembl
GRCm382118,475,843 - 118,479,696 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2118,475,850 - 118,479,711 (-)EnsemblGRCm38mm10GRCm38
MGSCv372118,301,579 - 118,305,432 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,167,292 - 118,171,137 (-)NCBIMGSCv36mm8
Celera2119,626,985 - 119,630,838 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.4NCBI
Srp14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,006,240 - 7,009,965 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,006,240 - 7,009,569 (-)NCBIChiLan1.0ChiLan1.0
SRP14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,273,777 - 29,276,918 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11533,425,122 - 33,428,263 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01518,973,826 - 18,976,946 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,229,658 - 37,232,729 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,229,658 - 37,232,729 (-)Ensemblpanpan1.1panPan2
SRP14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,256,467 - 7,259,080 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,256,170 - 7,259,146 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,311,235 - 7,313,848 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0307,385,045 - 7,387,666 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl307,383,208 - 7,387,732 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,307,409 - 7,310,022 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0307,413,514 - 7,416,332 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0307,542,086 - 7,544,699 (-)NCBIUU_Cfam_GSD_1.0
Srp14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864085,679,562 - 85,682,863 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364713,527,232 - 3,530,872 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRP14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1131,241,612 - 131,253,411 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11131,241,561 - 131,247,693 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21146,254,792 - 146,258,543 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRP14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,962,495 - 42,965,645 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,962,525 - 42,965,352 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604897,989,442 - 97,992,625 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srp14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248047,371,846 - 7,376,267 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248047,371,846 - 7,375,565 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Srp14
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:58
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000009866
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)396127817115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)384091273129091273Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000009866   ⟹   ENSRNOP00000009866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3105,442,198 - 105,445,859 (-)Ensembl
Rnor_6.0 Ensembl3110,245,936 - 110,249,627 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111030   ⟹   ENSRNOP00000076968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3105,442,249 - 105,445,855 (-)Ensembl
RefSeq Acc Id: NM_001106497   ⟹   NP_001099967
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83125,896,128 - 125,899,819 (-)NCBI
mRatBN7.23105,442,184 - 105,445,875 (-)NCBI
Rnor_6.03110,245,936 - 110,249,627 (-)NCBI
Rnor_5.03116,791,591 - 116,795,282 (-)NCBI
RGSC_v3.43104,906,842 - 104,910,533 (-)RGD
Celera3104,359,390 - 104,363,081 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099967 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66931 (Get FASTA)   NCBI Sequence Viewer  
  EDL79861 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009866.6
  ENSRNOP00000076968.1
RefSeq Acc Id: NP_001099967   ⟸   NM_001106497
- UniProtKB: B2RYW7 (UniProtKB/TrEMBL),   F7EN99 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009866   ⟸   ENSRNOT00000009866
Ensembl Acc Id: ENSRNOP00000076968   ⟸   ENSRNOT00000111030

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYW7-F1-model_v2 AlphaFold B2RYW7 1-110 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692309
Promoter ID:EPDNEW_R2833
Type:initiation region
Name:Srp14_1
Description:signal recognition particle 14
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03110,249,611 - 110,249,671EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308506 AgrOrtholog
BioCyc Gene G2FUF-48254 BioCyc
Ensembl Genes ENSRNOG00000007512 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009866.6 UniProtKB/TrEMBL
  ENSRNOT00000111030.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.720.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6921277 IMAGE-MGC_LOAD
InterPro Signal_recog_particle_SRP14 UniProtKB/TrEMBL
  Signal_recog_particle_SRP9/14 UniProtKB/TrEMBL
KEGG Report rno:296076 UniProtKB/TrEMBL
MGC_CLONE MGC:188923 IMAGE-MGC_LOAD
NCBI Gene 296076 ENTREZGENE
PANTHER SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN UniProtKB/TrEMBL
  SRP14 UniProtKB/TrEMBL
Pfam SRP14 UniProtKB/TrEMBL
PhenoGen Srp14 PhenoGen
RatGTEx ENSRNOG00000007512 RatGTEx
Superfamily-SCOP SRP9/14 UniProtKB/TrEMBL
UniProt A0A8I5Y6U5_RAT UniProtKB/TrEMBL
  B2RYW7 ENTREZGENE, UniProtKB/TrEMBL
  F7EN99 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Srp14  signal recognition particle 14   Srp14_predicted  signal recognition particle 14 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Srp14_predicted  signal recognition particle 14 (predicted)      Symbol and Name status set to approved 70820 APPROVED