SRP14 (signal recognition particle 14) - Rat Genome Database

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Gene: SRP14 (signal recognition particle 14) Canis lupus familiaris
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Symbol: SRP14
Name: signal recognition particle 14
RGD ID: 12258567
Description: ENCODES a protein that exhibits 7S RNA binding (inferred); endoplasmic reticulum signal peptide binding (inferred); INVOLVED IN protein targeting to ER (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: signal recognition particle 14 kDa protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,256,467 - 7,259,080 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,256,170 - 7,259,146 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,311,235 - 7,313,848 (-)NCBI
ROS_Cfam_1.0307,385,045 - 7,387,666 (-)NCBI
UMICH_Zoey_3.1307,307,409 - 7,310,022 (-)NCBI
UNSW_CanFamBas_1.0307,413,514 - 7,416,332 (-)NCBI
UU_Cfam_GSD_1.0307,542,086 - 7,544,699 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:2557625  


Genomics

Comparative Map Data
SRP14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,256,467 - 7,259,080 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,256,170 - 7,259,146 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,311,235 - 7,313,848 (-)NCBI
ROS_Cfam_1.0307,385,045 - 7,387,666 (-)NCBI
UMICH_Zoey_3.1307,307,409 - 7,310,022 (-)NCBI
UNSW_CanFamBas_1.0307,413,514 - 7,416,332 (-)NCBI
UU_Cfam_GSD_1.0307,542,086 - 7,544,699 (-)NCBI
SRP14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1540,035,690 - 40,039,181 (-)EnsemblGRCh38hg38GRCh38
GRCh381540,035,690 - 40,039,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371540,327,891 - 40,331,403 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,115,183 - 38,118,681 (-)NCBINCBI36hg18NCBI36
Build 341538,115,534 - 38,118,681NCBI
Celera1517,091,190 - 17,094,604 (-)NCBI
Cytogenetic Map15q15.1NCBI
HuRef1517,172,039 - 17,175,465 (-)NCBIHuRef
CHM1_11540,447,562 - 40,450,990 (-)NCBICHM1_1
Srp14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,306,324 - 118,310,177 (-)NCBIGRCm39mm39
GRCm39 Ensembl2118,306,331 - 118,310,192 (-)Ensembl
GRCm382118,475,843 - 118,479,696 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2118,475,850 - 118,479,711 (-)EnsemblGRCm38mm10GRCm38
MGSCv372118,301,579 - 118,305,432 (-)NCBIGRCm37mm9NCBIm37
MGSCv362118,167,292 - 118,171,137 (-)NCBImm8
Celera2119,626,985 - 119,630,838 (-)NCBICelera
Cytogenetic Map2E5NCBI
Srp14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23105,442,184 - 105,445,875 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3105,442,198 - 105,445,859 (-)Ensembl
Rnor_6.03110,245,936 - 110,249,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,245,936 - 110,249,627 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03116,791,591 - 116,795,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43104,906,842 - 104,910,533 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13104,803,269 - 104,851,219 (-)NCBI
Celera3104,359,390 - 104,363,081 (-)NCBICelera
Cytogenetic Map3q35NCBI
Srp14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,006,240 - 7,009,965 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,006,240 - 7,009,569 (-)NCBIChiLan1.0ChiLan1.0
SRP14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11537,229,658 - 37,232,729 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,229,658 - 37,232,729 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01518,973,826 - 18,976,946 (-)NCBIMhudiblu_PPA_v0panPan3
Srp14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864085,679,562 - 85,682,863 (-)NCBI
SpeTri2.0NW_0049364713,527,232 - 3,530,872 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRP14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1131,241,612 - 131,253,411 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11131,241,561 - 131,247,693 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21146,254,792 - 146,258,543 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRP14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,962,495 - 42,965,645 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,962,525 - 42,965,352 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604897,989,442 - 97,992,625 (-)NCBIVero_WHO_p1.0
Srp14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248047,371,846 - 7,375,565 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000050158   ⟹   ENSCAFP00000041095
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl307,256,170 - 7,259,138 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000089573   ⟹   ENSCAFP00000049653
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl307,256,932 - 7,259,146 (-)Ensembl
RefSeq Acc Id: NM_001003251   ⟹   NP_001003251
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1307,256,467 - 7,259,080 (-)NCBI
Dog10K_Boxer_Tasha307,311,235 - 7,313,848 (-)NCBI
ROS_Cfam_1.0307,385,045 - 7,387,666 (-)NCBI
UMICH_Zoey_3.1307,307,409 - 7,310,022 (-)NCBI
UNSW_CanFamBas_1.0307,413,514 - 7,416,332 (-)NCBI
UU_Cfam_GSD_1.0307,542,086 - 7,544,699 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001003251 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB02232 (Get FASTA)   NCBI Sequence Viewer  
  P16255 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001003251   ⟸   NM_001003251
- UniProtKB: P16255 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSCAFP00000041095   ⟸   ENSCAFT00000050158
RefSeq Acc Id: ENSCAFP00000049653   ⟸   ENSCAFT00000089573

Promoters
RGD ID:13688470
Promoter ID:EPDNEW_C6539
Type:initiation region
Name:SRP14_1
Description:signal recognition particle 14 kDa protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1307,259,111 - 7,259,171EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029889 Ensembl
NCBI Gene SRP14 ENTREZGENE
UniProt P16255 ENTREZGENE