Mrps31 (mitochondrial ribosomal protein S31) - Rat Genome Database

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Gene: Mrps31 (mitochondrial ribosomal protein S31) Rattus norvegicus
Analyze
Symbol: Mrps31
Name: mitochondrial ribosomal protein S31
RGD ID: 1307668
Description: Predicted to enable protein domain specific binding activity. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS31 (mitochondrial ribosomal protein S31); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 28S ribosomal protein S31, mitochondrial; LOC290850; MRP-S31; S31mt; small ribosomal subunit protein mS31
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81676,303,807 - 76,332,970 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1676,301,645 - 76,333,065 (-)EnsemblGRCr8
mRatBN7.21669,601,349 - 69,621,609 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1669,601,349 - 69,630,654 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1674,875,039 - 74,895,293 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01678,306,243 - 78,326,495 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01673,555,529 - 73,575,781 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01674,467,874 - 74,504,834 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1674,467,851 - 74,496,731 (-)Ensemblrn6Rnor6.0
Rnor_5.01674,102,247 - 74,141,352 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41674,249,818 - 74,270,032 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1667,491,522 - 67,511,748 (-)NCBICelera
RGSC_v3.11674,254,551 - 74,270,297 (-)NCBI
Cytogenetic Map16q12.5NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8567980   PMID:11984006   PMID:12477932   PMID:14651853   PMID:18614015   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Mrps31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81676,303,807 - 76,332,970 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1676,301,645 - 76,333,065 (-)EnsemblGRCr8
mRatBN7.21669,601,349 - 69,621,609 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1669,601,349 - 69,630,654 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1674,875,039 - 74,895,293 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01678,306,243 - 78,326,495 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01673,555,529 - 73,575,781 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01674,467,874 - 74,504,834 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1674,467,851 - 74,496,731 (-)Ensemblrn6Rnor6.0
Rnor_5.01674,102,247 - 74,141,352 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41674,249,818 - 74,270,032 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1667,491,522 - 67,511,748 (-)NCBICelera
RGSC_v3.11674,254,551 - 74,270,297 (-)NCBI
Cytogenetic Map16q12.5NCBI
MRPS31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381340,729,128 - 40,771,190 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1340,729,128 - 40,771,351 (-)Ensemblhg38GRCh38
GRCh371341,303,264 - 41,345,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361340,201,433 - 40,243,293 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341340,201,432 - 40,243,293NCBI
Celera1322,360,890 - 22,402,790 (-)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1322,104,498 - 22,146,296 (-)NCBIHuRef
CHM1_11341,271,210 - 41,313,103 (-)NCBICHM1_1
T2T-CHM13v2.01339,948,113 - 39,990,149 (-)NCBIT2T-CHM13v2.0
Mrps31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39822,901,356 - 22,919,685 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl822,901,377 - 22,919,681 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38822,410,449 - 22,429,669 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl822,411,361 - 22,429,665 (+)Ensemblmm10GRCm38
MGSCv37823,521,812 - 23,540,137 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36823,876,965 - 23,895,022 (+)NCBIMGSCv36mm8
Celera823,904,233 - 23,923,951 (+)NCBICelera
Cytogenetic Map8A2NCBI
cM Map811.28NCBI
Mrps31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554315,716,474 - 5,736,114 (+)Ensembl
ChiLan1.0NW_0049554315,716,382 - 5,736,480 (+)NCBIChiLan1.0ChiLan1.0
MRPS31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21440,251,245 - 40,293,558 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11331,354,725 - 31,397,033 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01321,936,160 - 21,977,944 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11340,524,654 - 40,567,476 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1340,524,723 - 40,567,379 (-)EnsemblpanPan2panpan1.1
MRPS31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.125521,401 - 555,678 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl25521,415 - 555,666 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha25618,711 - 652,983 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.025618,998 - 653,289 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl25619,004 - 653,281 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.125521,556 - 556,029 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.025514,515 - 548,791 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.025581,922 - 616,076 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mrps31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945161,667,964 - 161,693,759 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365655,152,055 - 5,177,749 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365655,151,977 - 5,177,750 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1115,450,705 - 15,472,314 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11115,450,698 - 15,472,320 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21115,738,166 - 15,775,720 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1319,085,282 - 19,122,736 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605725,117,192 - 25,154,896 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247481,594,814 - 1,633,741 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247481,594,970 - 1,633,668 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Mrps31
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11364,007,723 - 64,028,177 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mrps31
177 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:15
Interacting mature miRNAs:15
Transcripts:ENSRNOT00000015790
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
1298527Arunc2Aerobic running capacity QTL 22.9exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)167523528581732231Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat

Markers in Region
BF389634  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21669,611,032 - 69,611,207 (+)MAPPERmRatBN7.2
Rnor_6.01674,485,980 - 74,486,154NCBIRnor6.0
Rnor_5.01674,122,530 - 74,122,704UniSTSRnor5.0
RGSC_v3.41674,259,457 - 74,259,631UniSTSRGSC3.4
Celera1667,501,206 - 67,501,380UniSTS
RH 3.4 Map16664.11UniSTS
Cytogenetic Map16q12.5UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000015790   ⟹   ENSRNOP00000015790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1676,303,807 - 76,324,065 (-)Ensembl
mRatBN7.2 Ensembl1669,601,349 - 69,621,609 (-)Ensembl
Rnor_6.0 Ensembl1674,467,851 - 74,496,731 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111625   ⟹   ENSRNOP00000077968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1676,303,807 - 76,333,065 (-)Ensembl
mRatBN7.2 Ensembl1669,601,349 - 69,630,654 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000138352   ⟹   ENSRNOP00000109759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1676,301,645 - 76,324,065 (-)Ensembl
RefSeq Acc Id: NM_001106091   ⟹   NP_001099561
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81676,303,807 - 76,324,065 (-)NCBI
mRatBN7.21669,601,349 - 69,621,609 (-)NCBI
Rnor_6.01674,467,874 - 74,496,553 (-)NCBI
Rnor_5.01674,102,247 - 74,141,352 (-)NCBI
RGSC_v3.41674,249,818 - 74,270,032 (-)RGD
Celera1667,491,522 - 67,511,748 (-)RGD
Sequence:
RefSeq Acc Id: XM_063275251   ⟹   XP_063131321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81676,303,894 - 76,332,970 (-)NCBI
RefSeq Acc Id: XM_063275252   ⟹   XP_063131322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81676,303,894 - 76,332,926 (-)NCBI
RefSeq Acc Id: XM_063275253   ⟹   XP_063131323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81676,303,894 - 76,322,020 (-)NCBI
RefSeq Acc Id: NP_001099561   ⟸   NM_001106091
- UniProtKB: B0BN56 (UniProtKB/Swiss-Prot),   A0A8I5Y290 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015790   ⟸   ENSRNOT00000015790
Ensembl Acc Id: ENSRNOP00000077968   ⟸   ENSRNOT00000111625
RefSeq Acc Id: XP_063131321   ⟸   XM_063275251
- Peptide Label: isoform X1
- UniProtKB: B0BN56 (UniProtKB/Swiss-Prot),   A0A8I5Y290 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131322   ⟸   XM_063275252
- Peptide Label: isoform X1
- UniProtKB: B0BN56 (UniProtKB/Swiss-Prot),   A0A8I5Y290 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131323   ⟸   XM_063275253
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000109759   ⟸   ENSRNOT00000138352

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BN56-F1-model_v2 AlphaFold B0BN56 1-387 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700189
Promoter ID:EPDNEW_R10713
Type:initiation region
Name:Mrps31_1
Description:mitochondrial ribosomal protein S31
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01674,496,547 - 74,496,607EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307668 AgrOrtholog
BioCyc Gene G2FUF-10873 BioCyc
Ensembl Genes ENSRNOG00000011839 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015790 ENTREZGENE
  ENSRNOT00000015790.6 UniProtKB/Swiss-Prot
  ENSRNOT00000111625 ENTREZGENE
IMAGE_CLONE IMAGE:9021908 IMAGE-MGC_LOAD
InterPro MRP-S31 UniProtKB/Swiss-Prot
KEGG Report rno:290850 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187712 IMAGE-MGC_LOAD
NCBI Gene 290850 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR13231 UniProtKB/Swiss-Prot
Pfam MRP-S31 UniProtKB/Swiss-Prot
PhenoGen Mrps31 PhenoGen
RatGTEx ENSRNOG00000011839 RatGTEx
UniProt A0A8I5Y290 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M3P4_RAT UniProtKB/TrEMBL
  B0BN56 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mrps31  mitochondrial ribosomal protein S31   Mrps31_predicted  mitochondrial ribosomal protein S31 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mrps31_predicted  mitochondrial ribosomal protein S31 (predicted)      Symbol and Name status set to approved 70820 APPROVED