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Gene: Vangl1 (VANGL planar cell polarity protein 1) Ictidomys tridecemlineatus

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Symbol:

Vangl1

Name:

VANGL planar cell polarity protein 1

RGD ID:

12539905

Description:

INVOLVED IN mucociliary clearance (ortholog); pigmentation (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); catecholaminergic polymorphic ventricular tachycardia (ortholog); caudal regression syndrome (ortholog); FOUND IN lateral plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

vang-like protein 1; VANGL planar cell polarity protein 1, transcript variant X1; VANGL planar cell polarity protein 1, transcript variant X2; VANGL planar cell polarity protein 1, transcript variant X3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	13,493,501 - 13,546,443 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936627	942,483 - 992,071 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936627	942,570 - 992,081 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cardiomyopathy (ISO)

catecholaminergic polymorphic ventricular tachycardia (ISO)

caudal regression syndrome (ISO)

genetic disease (ISO)

keratoconus (ISO)

neural tube defect (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mucociliary clearance (ISO)

pigmentation (ISO)

Cellular Component

lateral plasma membrane (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Vangl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	13,493,501 - 13,546,443 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936627	942,483 - 992,071 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936627	942,570 - 992,081 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VANGL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	115,641,970 - 115,698,221 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	115,641,854 - 115,698,224 (+)	Ensembl			hg38	GRCh38
GRCh37	1	116,184,591 - 116,240,842 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	115,986,097 - 116,042,368 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	115,906,064 - 115,946,517	NCBI
Celera	1	114,413,417 - 114,469,666 (+)	NCBI		Celera
Cytogenetic Map	1	p13.1	NCBI
HuRef	1	114,043,513 - 114,098,933 (+)	NCBI		HuRef
CHM1_1	1	116,299,390 - 116,355,642 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	115,653,050 - 115,705,924 (+)	NCBI		T2T-CHM13v2.0

Vangl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	102,060,899 - 102,112,012 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	102,060,899 - 102,112,009 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	102,153,583 - 102,204,744 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	102,153,583 - 102,204,693 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	101,960,618 - 102,008,616 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	102,287,257 - 102,333,669 (-)	NCBI		MGSCv36	mm8
Celera	3	104,361,000 - 104,408,567 (-)	NCBI		Celera
Cytogenetic Map	3	F2.2	NCBI
cM Map	3	44.3	NCBI

Vangl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	192,277,762 - 192,326,151 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	192,280,422 - 192,326,186 (-)	Ensembl				GRCr8
mRatBN7.2	2	189,586,681 - 189,637,609 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	189,589,229 - 189,637,619 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	197,220,075 - 197,265,843 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	195,077,524 - 195,123,230 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	189,905,638 - 189,951,302 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	2	191,875,867 - 191,921,882 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	2	192,115,147 - 192,161,166 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	2	191,734,098 - 191,779,743 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	2	191,847,755 - 191,893,406 (-)	NCBI		F344_StmMcwi
Rnor_6.0	2	204,575,592 - 204,625,835 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	204,575,466 - 204,625,743 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	224,008,378 - 224,058,149 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	197,248,680 - 197,296,021 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	182,024,255 - 182,069,939 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Vangl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	18,882,565 - 18,933,258 (+)	Ensembl
ChiLan1.0	NW_004955435	18,890,995 - 18,933,258 (+)	NCBI	ChiLan1.0	ChiLan1.0

VANGL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	108,294,267 - 108,343,671 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	107,893,857 - 107,947,293 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	86,865,983 - 86,922,175 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	121,915,093 - 121,970,552 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	121,921,934 - 121,970,552 (-)	Ensembl			panPan2	panpan1.1

VANGL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	53,174,080 - 53,227,616 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	53,174,127 - 53,220,765 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	52,823,152 - 52,876,674 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	54,055,046 - 54,108,648 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	54,055,087 - 54,107,797 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	53,094,032 - 53,147,512 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	53,128,749 - 53,182,246 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	53,702,155 - 53,755,628 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

VANGL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	104,996,073 - 105,048,775 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	104,994,341 - 105,048,853 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	115,078,525 - 115,134,285 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VANGL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	18,016,759 - 18,067,786 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	18,017,342 - 18,058,613 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023669049	52 - 5,650 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vangl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	11,401,660 - 11,448,569 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624772	11,401,277 - 11,453,870 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Vangl1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	55,879,584 - 55,921,214 (+)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005334912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078027068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JBPVTT010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000015737 ⟹ ENSSTOP00000014085

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936627	943,223 - 988,654 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000037447 ⟹ ENSSTOP00000025408

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936627	942,483 - 992,071 (+)	Ensembl

RefSeq Acc Id:

XM_005334912 ⟹ XP_005334969

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	13,493,501 - 13,546,443 (-)	NCBI
SpeTri2.0	NW_004936627	942,570 - 988,677 (+)	NCBI

Sequence:

show sequence

GCGGCGGCGGTGGTGGGGCTCTGCCTCTACAAGAGCCCAGCACAGGCCGCAGGGACGCGGCCGC
TGTGAGCCGAGACCGCGGGCCGCTGAGCCCAGCCGGCCAGCGCGGAGAATTCGTTCCTGGTGGA
GAGAAGCTCCTCCTCTGGTTCCCAGACCCCTTGAGGCTTTAGGAACCAGTAGGTGAAATTATCT
GCCTTGAAGGAGAAACAGCGCCTGCTCCTTCATCAAGAGGAAGCTGTTCATTGCTATGGATACC
GAATCCACATATTCTGGATATTCATACTATTCAAGCCATTCAAAAAAATCTCACAGACAAGGGG
AGAGAACTAGAGAGAGACACAAATCACCCCGAAATAAAGATGGCAGAGGGTCAGAAAAATCTGT
CACCATTCAGGCTCCCACCGGAGAGCCCCTGTTGGCAAACGATTCTACTCGGACAGAGGAAGTT
CAGGATGACAACTGGGGCGAGACCACCACAGCCATCACGGGCACCTCGGAGCACAGCATATCCC
AAGAGGACATTGCCAGGATCAGCAAGGACATGGAGGACAGCGTGGGGCTGGATTGTAAACGTTA
CCTGGGCCTCACCATCGCCTCGTTTCTGGGACTCCTAGTTTTCCTCACCCCCATTGCCTTCATC
CTGTTACCCCCGATCCTGTGGAGGGACGAGCTGGAACCTTGTGGCACCATCTGCGAGGGACTCT
TTATCTCCGTGTCGTTCAAACTCCTCATTCTGCTCATAGGAACCTGGGCCCTTTTCTTCCGCAA
GCAGAGAGCCGACGTGCCACGGGTGTTTGTGTTCCGAGCCCTGTTACTGGTCCTCATCTTCCTC
TTTGTGGTTTCCTATTGGCTTTTTTATGGAGTCCGTATTTTGGACTCTCGGGACCGAAACTACC
AGGGCATTGTGCAATACGCCGTCTCCCTCGTGGATGCCCTCCTCTTCATCCATTACCTGGCCAT
CGTCCTGTTGGAGCTCCGGCAGCTGCAGCCCATGTTCACGCTGCAGGTGGTCCGCTCCACTGAT
GGAGAGTCCCGGTTCTACAGCTTGGGACACCTGAGTATCCAACGAGCAGCTTTGGTGGTTCTGG
AAAATTACTACAAAGATTTCACCATCTATAACCCGAACCTCCTCACAGCCTCCAAATTCCGGGC
AGCCAAGCACATGGCCGGGCTGAAAGTCTACAACGTAGACGGCCCCAGTAACAACGCCACAGGT
CAGTCCCGGGCCATGATCGCTGCGGCCGCTCGGCGCAGGGACTCCAGCCACAACGAATTGTATT
ACGAAGAGGCTGAGCATGAACGGCGGGTGAAGAAGCGGAGAGCAAGGCTGGTGGTGGCAGTGGA
AGAGGCCTTCATCCACATCCAGCGCCTCCAGGCAGAGGAGCAGCAGAAAGCCCCAGGGGAGGTG
ATGGACCCCCGGGAGGCGGCCCAGGCCATCTTCCCCTCCATGGCCAGGGCGCTGCAGAAGTATC
TGCGCACCACCCGGCAGCAGCACTACCACAGCATGGAGAGCATCCTGCAGCACCTGGCCTTCTG
CATCACCAACAGCATGACGCCCAAGGCCTTCTTAGAACGATACCTCAGCGCCGGACCCACCTTG
CAGTATGACAAGGAGCGTTGGCTGTCTACGCAGTGGAGACTGATCAGTGACGAGGCAGTGACGA
ACGGGTTACGGGATGGGATCGTTTTCGTCCTTAAATGCTTGGACTTCAGCCTCGTAGTCAATGT
GAAGAAAATTCCATTCATCGTCCTCTCCGAAGAGTTCATAGACCCCAAATCTCACAAATTCGTT
CTTCGCCTACAATCTGAGACATCAGTTTAAAAGTCCTATATTTGTGTCTTTAT

hide sequence

RefSeq Acc Id:

XM_021732976 ⟹ XP_021588651

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	13,493,501 - 13,546,443 (-)	NCBI
SpeTri2.0	NW_004936627	942,576 - 992,081 (+)	NCBI

Sequence:

show sequence

GCGGTGGTGGGGCTCTGCCTCTACAAGAGCCCAGCACAGGCCGCAGGGACGCGGCCGCTGTGAG
CCGAGACCGCGGGCCGCTGAGCCCAGCCGGCCAGCGCGGAGAATTCGTTCCTGGTGGAGAGAAG
CTCCTCCTCTGGTTCCCAGACCCCTTGAGGCTTTAGGAACCAGTAGGTGAAATTATCTGCCTTG
AAGGAGAAACAGCGCCTGCTCCTTCATCAAGAGGAAGCTGTTCATTGCTATGGATACCGAATCC
ACATATTCTGGATATTCATACTATTCAAGCCATTCAAAAAAATCTCACAGACAAGGGGAGAGAA
CTAGAGAGAGACACAAATCACCCCGAAATAAAGATGGCAGAGGGTCAGAAAAATCTGTCACCAT
TCAGGCTCCCACCGGAGAGCCCCTGTTGGCAAACGATTCTACTCGGACAGAGGAAGTTCAGGAT
GACAACTGGGGCGAGACCACCACAGCCATCACGGGCACCTCGGAGCACAGCATATCCCAAGAGG
ACATTGCCAGGATCAGCAAGGACATGGAGGACAGCGTGGGGCTGGATTGTAAACGTTACCTGGG
CCTCACCATCGCCTCGTTTCTGGGACTCCTAGTTTTCCTCACCCCCATTGCCTTCATCCTGTTA
CCCCCGATCCTGTGGAGGGACGAGCTGGAACCTTGTGGCACCATCTGCGAGGGACTCTTTATCT
CCGTGTCGTTCAAACTCCTCATTCTGCTCATAGGAACCTGGGCCCTTTTCTTCCGCAAGCAGAG
AGCCGACGTGCCACGGGTGTTTGTGTTCCGAGCCCTGTTACTGGTCCTCATCTTCCTCTTTGTG
GTTTCCTATTGGCTTTTTTATGGAGTCCGTATTTTGGACTCTCGGGACCGAAACTACCAGGGCA
TTGTGCAATACGCCGTCTCCCTCGTGGATGCCCTCCTCTTCATCCATTACCTGGCCATCGTCCT
GTTGGAGCTCCGGCAGCTGCAGCCCATGTTCACGCTGCAGGTGGTCCGCTCCACTGATGGAGAG
TCCCGGTTCTACAGCTTGGGACACCTGAGTATCCAACGAGCAGCTTTGGTGGTTCTGGAAAATT
ACTACAAAGATTTCACCATCTATAACCCGAACCTCCTCACAGCCTCCAAATTCCGGGCAGCCAA
GCACATGGCCGGGCTGAAAGTCTACAACGTAGACGCTGCCCTTATGGCCAAACTGAAACTTTGT
GTAACAGATGGCCCCAGTAACAACGCCACAGGTCAGTCCCGGGCCATGATCGCTGCGGCCGCTC
GGCGCAGGGACTCCAGCCACAACGAATTGTATTACGAAGAGGCTGAGCATGAACGGCGGGTGAA
GAAGCGGAGAGCAAGGCTGGTGGTGGCAGTGGAAGAGGCCTTCATCCACATCCAGCGCCTCCAG
GCAGAGGAGCAGCAGAAAGCCCCAGGGGAGGTGATGGACCCCCGGGAGGCGGCCCAGGCCATCT
TCCCCTCCATGGCCAGGGCGCTGCAGAAGTATCTGCGCACCACCCGGCAGCAGCACTACCACAG
CATGGAGAGCATCCTGCAGCACCTGGCCTTCTGCATCACCAACAGCATGACGCCCAAGGCCTTC
TTAGAACGATACCTCAGCGCCGGACCCACCTTGCAGTATGACAAGGAGCGTTGGCTGTCTACGC
AGTGGAGACTGATCAGTGACGAGGCAGTGACGAACGGGTTACGGGATGGGATCGTTTTCGTCCT
TAAATGCTTGGACTTCAGCCTCGTAGTCAATGTGAAGAAAATTCCATTCATCGTCCTCTCCGAA
GAGTTCATAGACCCCAAATCTCACAAATTCGTTCTTCGCCTACAATCTGAGACATCAGTTTAAA
AGTCCTATATTTGTGTCTTTATATAAAAAGAAGAATATATAGAGAATTATATATGTCCAGAGGG
GTGTCTTTTTTTAAAAAAAAAAAAAAGTTTTTTTATTCTTCATTGATGACTGAAACTGGCAGAT
GATAGACCAGTATCCTTTGACCATCTGCACTTTATTCGTAAGGAAGCAGGGGAGAGCCATCCTG
ACAAAAAGTGACCGGTGGCCCCTGACTTTCATAGAGGGGACTTCTCAAAAAGCCGTTCTCTGGA
GTCTGCGACGGCTGTAAACCAAAGCAGAGCTGCTGCATCCTCGGGAGCCTCGCCTTACAACTAG
TCCCTGCCTCTCGTCCAGATCCAGGACCACATCCCCCGTTGCTTCTGGTCAACCTCTTCCTGGA
TTCTAGGGGACCCATCTGATTCTGTTTCACCAGACCCTGCACATCCGTGTGGGAATCACGGGCA
GTTCCAGAGACTCCTAGCCTTCATCTTTGTTCTTTGTTGCCTTAGATGCCTCAGAGAAAGATCT
CCCCTACACACACACACACACACACACACACACACACACACACAAAATGTGCACTATCAGGTTA
CAGCTATTAAGTGATTTACTTTTTTTGTTTTTTCAAAGAGAAAACCTTCCTGCTCTGTTCCTGA
TCCCATTCCTCTGCTCATTCAACCAGGGAGCCCTTTCCTGTCCCTGGGATGGCCCAGCTGGACT
TCACTCCATCCCACCCTCTGTAGCATACATACATACTATGGCCCTACCCCATGGGCAACCCTGG
CTAGGCAAGCTCAGCTCTCCAAAGATCTCCACGTGTGCCCACAGGCTCTTTGTTTCCACAGGGA
AGAATGGCCTACCAGGTAGAACCCAGTAGAGCGGACCTACTGGCACGCCCTCCTAGGCTGCAGC
AGGAGCTGCACTCCACCCTACCCCATCCTTCTCCCCCACAGATCCATACCAACCAGGGGAGACT
AACATTGTGACTCTGGGGTGGGCAGGTGCCCATTTGAAGCCATCTGATTTCCTAGGGCAATAAG
TTCTCATGCAACTCAACCTGCCCTGCCAAGCGGGACCAAACAATGCCGTTCACACTGGCAACGA
TTGCTGGCCAGTCCCTGTGTTTCCTGACCACAGTCACTGTGCAACTTATCACCTCAGCCACTTG
CTTGGGGGCTCGCTTGGTTCCTGATATATCAATTGTTCAATTGTTGGTCAGGTAGAGAGAGGAA
AAGGGGAGGAGGCTACAGAGTATGGGGCAAGGAGATGAGGGAGCCAATCTTCTAGTTCAAAATG
GTTCTTCTGTGATCTCTTTCTTAAAGGCAGCTGGCTTCTGAGGGCTCTCCCCAAGCTGCACAAA
CTGTGGGCAGGGGATCTGTCTTGGGCAAAATCCTGCTGCAGGGGAGTGCCTTCAGGAGCCACAT
CTAGATACCTTTCAGTGGTTTGTGCTTATGTTTACCCTCCTTTATCTGCAGCAAACCTATTAAA
AGTAATCATTCTTCCCTTTCCCCAATATTTAGGGTGACCAGTTATCTCGTCTCAGTGGAGGATG
GCAGCGTTAAAATGTCTGTTGTTCCATGTGTCTGCGCACGCACTTGCCATTCCATGCATTTGGC
AAGCCGCAGGGTATTTTTGTGGGTCCTTTTAAAAATTAAAATTGGCTTTGGGTATCTGTAACTA
CAACTGTACCTGAAATCAAGTTAACATTGTTCTTGATTCAGCAGCCTTCAGCTCAAAAAGATGG
GCTGGAGGAGAAAGGAGGAGAAAGCCGTGGGCGTGGCGTGGAGCCAGGATGTACGATTCAACAG
CGTGGTTCTGTTTATGAAAAACACATACCATGTAACCATGGTGCTTTTTGTTCTCCGTTTTTGC
CTCTGGGTCCCTTCAAACTGGAAGTTCCTTATGATGTCTTTCTCAGGAAATATTTCTTAGGTAG
GATAAGAGAGGGTGAATAGATGTGAGATTTGGGCCACGTAAAGAGAACATCTCAGACCAGCCGC
TGTGCCATGAATACGGTGCAGTTGGGAAGTGCCGTGAACGTGTGTGTGTACCTAGAGTCAGTAA
TGATACTGTTCATTGGCATTTTAAAATACTGGGCTTCCAACCGTATCTTGAATTACCAGTCTGG
AAGGAGTTAATTTGGATTCATTCACTTTGGCATGTACATTCCCAGCAGGGTGAAGAAAGGTTTA
AATTAAGGAATTTATTTTCTCTCTCCTCCTCTCCCCATCGTCTCCCTCTTCCACTCTTTGTACA
GGAGAACGTCAGACTTTCTGAAATTATTGTTTCTGTTTTAAATTGAATATCGATTTTTTTTTTT
ACACAAACTTTGTATTGAGTCCTTCTTGAAAGAGTAACAAAATGAAATACAGGATCCTTATAAA
GCCTTGGTACTTTCGACATCTTAATAGCTAGAGTTACTGGTGCATTGGGAACTATGTAGATGGC
ATTAAAAAATGTAAGGTTGCAGAAAGCTGCATCGCACAATTGAACACAATAAATTTTTATTTCA
GTTCTTGGAAACAGCGGGCTGTTCTTTCTAATGGGGCAAAACGGTGCCCCAAGGCTAGTAGAGT
GTATGCTCCTATGAGAGGAGATAGGATTTCATTTACCTTAAATGTTTATAGATTTTCTATAACT
TTCAACCTAAGTTATTAAAATCTAACATTAAATGTGAAAGAAGAACTTAATGAGGAGTATAGGT
CTCAGATTGCTGGCTTCCCTGGTGAAGTTTTAACCAATAGGGAACTTTTGGTCATAATAAGTAT
GTACTTTCAAAAAAATATGACAGTTTTTAATAGTCCATGTACTCAATGTTAGATTTTTGTAAAA
GCCTGCCTTCTGGGAGTTGGAAAAGAGAAAGTTGGATAGTTATCCATTCTTTGTACTATCATGT
ACTATTAAATCAAAATGCATCATGGTTTTGCTGAAGTTCATAAAGTAAGCCGTAGAGAAAATGC
TTGACCACCCATTTGGGGCTGAACTATTATTATCTGCCTTTCTTCCTCTGTCCTCTTGAAATCT
ACAAAGATGACCAGTTCTTAATAGCACAAGGTGAGAGCCAGGTGGTCCTGGGGTGTTGGCTGCA
TCGCTGTTCCTTGCTGGGAGCTAGGGACTCCCTTTTCGAGACCAGCCTTGTAGCATGTGTTGGA
GAGGAATGAGGTGCTCACCCTGTCCCTTCTGGGGGCAGTCAGTGGTGGTGGCCTGTTTCCTTTT
TTGCCTGTCATCTTCTCAAGTGCACATATTTACACAGTTTGTACCTCTGGTATCCCACCAGCAC
CTTGGATGATAGGAATGGATTGCCTGCTTCCCCTCACCACCACCCTGTGGACCGAGTGAATGTT
CCAGACACACAGTGAAACCAGCAAAGTCAAGCCCTTGGTTTACCCTTTTCCACCTGATCTCTGC
TGTGAAAGGCCCCTACATGGTGTGTGTGTGTGTA

hide sequence

RefSeq Acc Id:

XM_021732977 ⟹ XP_021588652

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	13,493,501 - 13,545,857 (-)	NCBI
SpeTri2.0	NW_004936627	943,244 - 988,705 (+)	NCBI

Sequence:

show sequence

AAAATTGAGCCAGCCCGGAGGCCTTGGGGAGGCGCGTCCGGTGGCGCATCGGAGAGCGCAACAG
GCAGAATTCGTTCCTGGTGGAGAGAAGCTCCTCCTCTGGTTCCCAGACCCCTTGAGGCTTTAGG
AACCAGTAGGTGAAATTATCTGCCTTGAAGGAGAAACAGCGCCTGCTCCTTCATCAAGAGGAAG
CTGTTCATTGCTATGGATACCGAATCCACATATTCTGGATATTCATACTATTCAAGCCATTCAA
AAAAATCTCACAGACAAGGGGAGAGAACTAGAGAGAGACACAAATCACCCCGAAATAAAGATGG
CAGAGGGTCAGAAAAATCTGTCACCATTCAGGCTCCCACCGGAGAGCCCCTGTTGGCAAACGAT
TCTACTCGGACAGAGGAAGTTCAGGATGACAACTGGGGCGAGACCACCACAGCCATCACGGGCA
CCTCGGAGCACAGCATATCCCAAGAGGACATTGCCAGGATCAGCAAGGACATGGAGGACAGCGT
GGGGCTGGATTGTAAACGTTACCTGGGCCTCACCATCGCCTCGTTTCTGGGACTCCTAGTTTTC
CTCACCCCCATTGCCTTCATCCTGTTACCCCCGATCCTGTGGAGGGACGAGCTGGAACCTTGTG
GCACCATCTGCGAGGGACTCTTTATCTCCGTGTCGTTCAAACTCCTCATTCTGCTCATAGGAAC
CTGGGCCCTTTTCTTCCGCAAGCAGAGAGCCGACGTGCCACGGGTGTTTGTGTTCCGAGCCCTG
TTACTGGTCCTCATCTTCCTCTTTGTGGTTTCCTATTGGCTTTTTTATGGAGTCCGTATTTTGG
ACTCTCGGGACCGAAACTACCAGGGCATTGTGCAATACGCCGTCTCCCTCGTGGATGCCCTCCT
CTTCATCCATTACCTGGCCATCGTCCTGTTGGAGCTCCGGCAGCTGCAGCCCATGTTCACGCTG
CAGGTGGTCCGCTCCACTGATGGAGAGTCCCGGTTCTACAGCTTGGGACACCTGAGTATCCAAC
GAGCAGCTTTGGTGGTTCTGGAAAATTACTACAAAGATTTCACCATCTATAACCCGAACCTCCT
CACAGCCTCCAAATTCCGGGCAGCCAAGCACATGGCCGGGCTGAAAGTCTACAACGTAGACGGC
CCCAGTAACAACGCCACAGGTCAGTCCCGGGCCATGATCGCTGCGGCCGCTCGGCGCAGGGACT
CCAGCCACAACGAATTGTATTACGAAGAGGCTGAGCATGAACGGCGGGTGAAGAAGCGGAGAGC
AAGGCTGGTGGTGGCAGTGGAAGAGGCCTTCATCCACATCCAGCGCCTCCAGGCAGAGGAGCAG
CAGAAAGCCCCAGGGGAGGTGATGGACCCCCGGGAGGCGGCCCAGGCCATCTTCCCCTCCATGG
CCAGGGCGCTGCAGAAGTATCTGCGCACCACCCGGCAGCAGCACTACCACAGCATGGAGAGCAT
CCTGCAGCACCTGGCCTTCTGCATCACCAACAGCATGACGCCCAAGGCCTTCTTAGAACGATAC
CTCAGCGCCGGACCCACCTTGCAGTATGACAAGGAGCGTTGGCTGTCTACGCAGTGGAGACTGA
TCAGTGACGAGGCAGTGACGAACGGGTTACGGGATGGGATCGTTTTCGTCCTTAAATGCTTGGA
CTTCAGCCTCGTAGTCAATGTGAAGAAAATTCCATTCATCGTCCTCTCCGAAGAGTTCATAGAC
CCCAAATCTCACAAATTCGTTCTTCGCCTACAATCTGAGACATCAGTTTAAAAGTCCTATATTT
GTGTCTTTATATAAAAAGAAGAATATATAGAGAATTAT

hide sequence

RefSeq Acc Id:

XM_040287343 ⟹ XP_040143277

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	13,493,501 - 13,545,534 (-)	NCBI

RefSeq Acc Id:

XM_040287344 ⟹ XP_040143278

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	13,493,501 - 13,545,860 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005334969	(Get FASTA)	NCBI Sequence Viewer
	XP_021588651	(Get FASTA)	NCBI Sequence Viewer
	XP_077883194	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000014085.2
	ENSSTOP00000025408.1
	ENSSTOP00015013713
GenBank Protein	KAG3281210	(Get FASTA)	NCBI Sequence Viewer
	KAG3281211	(Get FASTA)	NCBI Sequence Viewer
	KAG3281212	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005334969 ⟸ XM_005334912
- Peptide Label:	isoform X2
- UniProtKB:	I3MQ96 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTESTYSGYSYYSSHSKKSHRQGERTRERHKSPRNKDGRGSEKSVTIQAPTGEPLLANDSTRT EEVQDDNWGETTTAITGTSEHSISQEDIARISKDMEDSVGLDCKRYLGLTIASFLGLLVFLTPI AFILLPPILWRDELEPCGTICEGLFISVSFKLLILLIGTWALFFRKQRADVPRVFVFRALLLVL IFLFVVSYWLFYGVRILDSRDRNYQGIVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVR STDGESRFYSLGHLSIQRAALVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNN ATGQSRAMIAAAARRRDSSHNELYYEEAEHERRVKKRRARLVVAVEEAFIHIQRLQAEEQQKAP GEVMDPREAAQAIFPSMARALQKYLRTTRQQHYHSMESILQHLAFCITNSMTPKAFLERYLSAG PTLQYDKERWLSTQWRLISDEAVTNGLRDGIVFVLKCLDFSLVVNVKKIPFIVLSEEFIDPKSH KFVLRLQSETSV hide sequence

RefSeq Acc Id:

XP_021588651 ⟸ XM_021732976

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDTESTYSGYSYYSSHSKKSHRQGERTRERHKSPRNKDGRGSEKSVTIQAPTGEPLLANDSTRT
EEVQDDNWGETTTAITGTSEHSISQEDIARISKDMEDSVGLDCKRYLGLTIASFLGLLVFLTPI
AFILLPPILWRDELEPCGTICEGLFISVSFKLLILLIGTWALFFRKQRADVPRVFVFRALLLVL
IFLFVVSYWLFYGVRILDSRDRNYQGIVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVR
STDGESRFYSLGHLSIQRAALVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDAALMA
KLKLCVTDGPSNNATGQSRAMIAAAARRRDSSHNELYYEEAEHERRVKKRRARLVVAVEEAFIH
IQRLQAEEQQKAPGEVMDPREAAQAIFPSMARALQKYLRTTRQQHYHSMESILQHLAFCITNSM
TPKAFLERYLSAGPTLQYDKERWLSTQWRLISDEAVTNGLRDGIVFVLKCLDFSLVVNVKKIPF
IVLSEEFIDPKSHKFVLRLQSETSV

hide sequence

RefSeq Acc Id:

XP_021588652 ⟸ XM_021732977

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDTESTYSGYSYYSSHSKKSHRQGERTRERHKSPRNKDGRGSEKSVTIQAPTGEPLLANDSTRT
EEVQDDNWGETTTAITGTSEHSISQEDIARISKDMEDSVGLDCKRYLGLTIASFLGLLVFLTPI
AFILLPPILWRDELEPCGTICEGLFISVSFKLLILLIGTWALFFRKQRADVPRVFVFRALLLVL
IFLFVVSYWLFYGVRILDSRDRNYQGIVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVR
STDGESRFYSLGHLSIQRAALVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNN
ATGQSRAMIAAAARRRDSSHNELYYEEAEHERRVKKRRARLVVAVEEAFIHIQRLQAEEQQKAP
GEVMDPREAAQAIFPSMARALQKYLRTTRQQHYHSMESILQHLAFCITNSMTPKAFLERYLSAG
PTLQYDKERWLSTQWRLISDEAVTNGLRDGIVFVLKCLDFSLVVNVKKIPFIVLSEEFIDPKSH
KFVLRLQSETSV

hide sequence

RefSeq Acc Id:	XP_040143278 ⟸ XM_040287344
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040143277 ⟸ XM_040287343
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSSTOP00000025408 ⟸ ENSSTOT00000037447

Ensembl Acc Id:

ENSSTOP00000014085 ⟸ ENSSTOT00000015737

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000015734	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00015011164	ENTREZGENE
Ensembl Transcript	ENSSTOT00000015737.3	UniProtKB/TrEMBL
	ENSSTOT00000037447.1	UniProtKB/TrEMBL
InterPro	VANGL	UniProtKB/TrEMBL
KEGG Report	iti:101977765	UniProtKB/TrEMBL
NCBI Gene	Vangl1	ENTREZGENE
PANTHER	PTHR20886	UniProtKB/TrEMBL
Pfam	Strabismus	UniProtKB/TrEMBL
PIRSF	Strabismus	UniProtKB/TrEMBL
UniProt	I3MQ96	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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