VANGL1 (VANGL planar cell polarity protein 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: VANGL1 (VANGL planar cell polarity protein 1) Pan paniscus
Analyze
Symbol: VANGL1
Name: VANGL planar cell polarity protein 1
RGD ID: 12032511
Description: INVOLVED IN pigmentation (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); catecholaminergic polymorphic ventricular tachycardia (ortholog); catecholaminergic polymorphic ventricular tachycardia 2 (ortholog); FOUND IN lateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: vang-like 1 (van gogh, Drosophila); vang-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11121,915,093 - 121,970,552 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1121,921,934 - 121,970,552 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0186,865,983 - 86,922,175 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
pigmentation  (ISO)

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
VANGL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11121,915,093 - 121,970,552 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1121,921,934 - 121,970,552 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0186,865,983 - 86,922,175 (-)NCBIMhudiblu_PPA_v0panPan3
VANGL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1115,641,970 - 115,698,224 (+)EnsemblGRCh38hg38GRCh38
GRCh381115,641,970 - 115,698,221 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371116,184,591 - 116,240,842 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361115,986,097 - 116,042,368 (+)NCBINCBI36hg18NCBI36
Build 341115,906,064 - 115,946,517NCBI
Celera1114,413,417 - 114,469,666 (+)NCBI
Cytogenetic Map1p13.1NCBI
HuRef1114,043,513 - 114,098,933 (+)NCBIHuRef
CHM1_11116,299,390 - 116,355,642 (+)NCBICHM1_1
Vangl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393102,060,899 - 102,112,012 (-)NCBIGRCm39mm39
GRCm39 Ensembl3102,060,899 - 102,112,009 (-)Ensembl
GRCm383102,153,583 - 102,204,744 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3102,153,583 - 102,204,693 (-)EnsemblGRCm38mm10GRCm38
MGSCv373101,960,618 - 102,008,616 (-)NCBIGRCm37mm9NCBIm37
MGSCv363102,287,257 - 102,333,669 (-)NCBImm8
Celera3104,361,000 - 104,408,567 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
Vangl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22189,586,681 - 189,637,609 (-)NCBI
Rnor_6.0 Ensembl2204,575,466 - 204,625,743 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02204,575,592 - 204,625,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02224,008,378 - 224,058,149 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42197,248,680 - 197,296,021 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2182,024,255 - 182,069,939 (-)NCBICelera
Cytogenetic Map2q34NCBI
Vangl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543518,882,565 - 18,933,258 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543518,890,995 - 18,933,258 (+)NCBIChiLan1.0ChiLan1.0
VANGL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1753,174,127 - 53,220,765 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11753,174,080 - 53,227,616 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Vangl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936627942,570 - 992,081 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VANGL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4104,998,532 - 105,048,853 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14104,994,341 - 105,048,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24115,078,525 - 115,134,285 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103224154
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12018,016,759 - 18,067,786 (-)NCBI
ChlSab1.1 Ensembl2018,017,342 - 18,058,613 (-)Ensembl
Vangl1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477211,401,277 - 11,453,870 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000052822   ⟹   ENSPPAP00000029968
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1121,921,934 - 121,970,552 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000052826   ⟹   ENSPPAP00000029972
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1121,921,934 - 121,954,830 (-)Ensembl
RefSeq Acc Id: XM_003805630   ⟹   XP_003805678
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11121,915,093 - 121,970,552 (-)NCBI
Mhudiblu_PPA_v0186,865,983 - 86,921,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034929916   ⟹   XP_034785807
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0186,865,983 - 86,922,175 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003805678 (Get FASTA)   NCBI Sequence Viewer  
  XP_034785807 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003805678   ⟸   XM_003805630
- Sequence:
RefSeq Acc Id: XP_034785807   ⟸   XM_034929916
RefSeq Acc Id: ENSPPAP00000029968   ⟸   ENSPPAT00000052822
RefSeq Acc Id: ENSPPAP00000029972   ⟸   ENSPPAT00000052826


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037996 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000029968 UniProtKB/TrEMBL
  ENSPPAP00000029972 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052822 UniProtKB/TrEMBL
  ENSPPAT00000052826 UniProtKB/TrEMBL
InterPro VANGL UniProtKB/TrEMBL
KEGG Report pps:100995324 UniProtKB/TrEMBL
NCBI Gene VANGL1 ENTREZGENE
PANTHER PTHR20886 UniProtKB/TrEMBL
Pfam Strabismus UniProtKB/TrEMBL
PIRSF Strabismus UniProtKB/TrEMBL
UniProt A0A2R9BKR2_PANPA UniProtKB/TrEMBL
  A0A2R9BNG4_PANPA UniProtKB/TrEMBL