KLHL29 (kelch like family member 29) - Rat Genome Database

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Pathways
Gene: KLHL29 (kelch like family member 29) Canis lupus familiaris
Analyze
Symbol: KLHL29
Name: kelch like family member 29
RGD ID: 12316107
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kelch-like 29; kelch-like protein 29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11717,945,260 - 18,250,942 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1717,945,254 - 18,248,936 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1717,844,622 - 18,150,204 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01718,115,299 - 18,421,277 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1718,198,901 - 18,421,189 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11717,957,229 - 18,262,871 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01717,964,343 - 18,270,034 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01718,006,133 - 18,312,297 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
KLHL29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11717,945,260 - 18,250,942 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1717,945,254 - 18,248,936 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1717,844,622 - 18,150,204 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01718,115,299 - 18,421,277 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1718,198,901 - 18,421,189 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11717,957,229 - 18,262,871 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01717,964,343 - 18,270,034 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01718,006,133 - 18,312,297 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
KLHL29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38223,385,179 - 23,708,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl223,385,179 - 23,708,611 (+)Ensemblhg38GRCh38
GRCh37223,608,050 - 23,931,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36223,459,203 - 23,784,987 (+)NCBIBuild 36Build 36hg18NCBI36
Celera223,450,093 - 23,772,958 (+)NCBICelera
Cytogenetic Map2p24.1NCBI
HuRef223,348,544 - 23,671,428 (+)NCBIHuRef
CHM1_1223,537,649 - 23,861,192 (+)NCBICHM1_1
T2T-CHM13v2.0223,420,561 - 23,743,675 (+)NCBIT2T-CHM13v2.0
Klhl29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39125,127,465 - 5,425,682 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl125,127,472 - 5,425,682 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38125,077,465 - 5,375,682 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl125,077,472 - 5,375,682 (-)Ensemblmm10GRCm38
MGSCv37125,084,271 - 5,382,488 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36125,103,477 - 5,402,008 (-)NCBIMGSCv36mm8
Celera125,000,387 - 5,299,043 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map122.28NCBI
Klhl29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8633,805,922 - 34,110,055 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl633,805,922 - 34,110,055 (-)EnsemblGRCr8
mRatBN7.2628,086,489 - 28,390,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl628,086,489 - 28,390,647 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx628,378,751 - 28,682,882 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0628,694,651 - 28,998,759 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0628,169,174 - 28,473,301 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd635,249,036 - 35,553,159 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive634,685,293 - 34,989,405 (-)NCBILyon_Normotensive
Lyon_Hypertensive632,481,101 - 32,785,211 (-)NCBILyon_Hypertensive
F344_StmMcwi631,698,350 - 32,002,123 (-)NCBIF344_StmMcwi
Rnor_6.0629,178,858 - 29,483,460 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl629,178,858 - 29,483,460 (-)Ensemblrn6Rnor6.0
Rnor_5.0640,403,632 - 40,707,087 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4628,387,843 - 28,704,178 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera627,553,938 - 27,856,658 (-)NCBICelera
RGSC_v3.1628,392,428 - 28,706,901 (-)NCBI
Cytogenetic Map6q14NCBI
Klhl29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554695,863,980 - 5,993,610 (+)Ensembl
ChiLan1.0NW_0049554695,787,946 - 5,993,610 (+)NCBIChiLan1.0ChiLan1.0
KLHL29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212102,806,410 - 103,133,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A102,810,375 - 103,137,914 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A23,382,886 - 23,710,132 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A23,578,102 - 23,811,204 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A23,628,955 - 23,811,204 (+)EnsemblpanPan2panpan1.1
Klhl29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629262,384,345 - 62,663,916 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364938,175,649 - 8,455,220 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364938,175,649 - 8,303,569 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLHL29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3114,871,164 - 115,177,466 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13114,871,659 - 114,937,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23122,136,541 - 122,441,282 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KLHL29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11483,941,173 - 84,261,880 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1483,943,146 - 84,261,785 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604527,897,744 - 28,219,720 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klhl29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247385,918,437 - 6,112,925 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247385,845,272 - 6,112,887 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Klhl29
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1725,708,544 - 26,015,195 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in KLHL29
4314 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000006294   ⟹   ENSCAFP00000005831
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1717,945,254 - 18,248,936 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845036728   ⟹   ENSCAFP00845028753
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1718,198,901 - 18,421,189 (+)Ensembl
RefSeq Acc Id: XM_038453382   ⟹   XP_038309310
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1717,974,062 - 18,150,204 (+)NCBI
RefSeq Acc Id: XM_038498328   ⟹   XP_038354256
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11717,957,229 - 18,262,871 (+)NCBI
RefSeq Acc Id: XM_038560886   ⟹   XP_038416814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01718,135,816 - 18,312,297 (+)NCBI
RefSeq Acc Id: XM_038560887   ⟹   XP_038416815
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01718,006,133 - 18,312,297 (+)NCBI
RefSeq Acc Id: XM_038624915   ⟹   XP_038480843
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01718,093,822 - 18,270,034 (+)NCBI
RefSeq Acc Id: XM_038624916   ⟹   XP_038480844
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01717,964,343 - 18,270,034 (+)NCBI
RefSeq Acc Id: XM_038690821   ⟹   XP_038546749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01718,245,009 - 18,421,277 (+)NCBI
RefSeq Acc Id: XM_038690822   ⟹   XP_038546750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01718,115,299 - 18,421,277 (+)NCBI
RefSeq Acc Id: XM_540105   ⟹   XP_540105
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11717,945,260 - 18,250,942 (+)NCBI
Dog10K_Boxer_Tasha1717,844,622 - 18,150,204 (+)NCBI
Sequence:
RefSeq Acc Id: XP_540105   ⟸   XM_540105
- UniProtKB: A0A8P0TJT4 (UniProtKB/TrEMBL),   A0A8C0Q9Z8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000005831   ⟸   ENSCAFT00000006294
RefSeq Acc Id: XP_038354256   ⟸   XM_038498328
RefSeq Acc Id: XP_038480844   ⟸   XM_038624916
RefSeq Acc Id: XP_038480843   ⟸   XM_038624915
RefSeq Acc Id: XP_038546750   ⟸   XM_038690822
- UniProtKB: A0A8C0R7Y7 (UniProtKB/TrEMBL),   A0A8I3S1Z2 (UniProtKB/TrEMBL),   A0A8C0Q9Z8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546749   ⟸   XM_038690821
- UniProtKB: A0A8C0R7Y7 (UniProtKB/TrEMBL),   A0A8I3S1Z2 (UniProtKB/TrEMBL),   A0A8C0Q9Z8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038309310   ⟸   XM_038453382
- UniProtKB: A0A8P0TJT4 (UniProtKB/TrEMBL),   A0A8C0Q9Z8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416815   ⟸   XM_038560887
- UniProtKB: A0A8C0Q9Z8 (UniProtKB/TrEMBL),   A0A8C0R7Y7 (UniProtKB/TrEMBL),   A0A8I3S1Z2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416814   ⟸   XM_038560886
- UniProtKB: A0A8C0Q9Z8 (UniProtKB/TrEMBL),   A0A8C0R7Y7 (UniProtKB/TrEMBL),   A0A8I3S1Z2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845028753   ⟸   ENSCAFT00845036728
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003916 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040004813 UniProtKB/TrEMBL
  ENSCAFG00845020825 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000006294.5 UniProtKB/TrEMBL
  ENSCAFT00000097957.1 UniProtKB/TrEMBL
  ENSCAFT00040009082.1 UniProtKB/TrEMBL
  ENSCAFT00845036728 ENTREZGENE
  ENSCAFT00845036728.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene KLHL29 ENTREZGENE
PANTHER KELCH-LIKE PROTEIN 22 UniProtKB/TrEMBL
  LD33804P UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  Kelch_KLHDC2_KLHL20_DRC7 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt A0A8C0Q9Z8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R7Y7 ENTREZGENE
  A0A8I3S1Z2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N6R3_CANLF UniProtKB/TrEMBL
  A0A8P0TJT4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42462 ENTREZGENE