Klhl29 (kelch like family member 29) - Rat Genome Database

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Gene: Klhl29 (kelch like family member 29) Chinchilla lanigera
Analyze
Symbol: Klhl29
Name: kelch like family member 29
RGD ID: 8808397
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kelch-like family member 29; kelch-like protein 29
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554695,863,980 - 5,993,610 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554695,787,946 - 5,993,610 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Klhl29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554695,863,980 - 5,993,610 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554695,787,946 - 5,993,610 (+)NCBIChiLan1.0ChiLan1.0
KLHL29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38223,385,179 - 23,708,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl223,385,179 - 23,708,611 (+)EnsemblGRCh38hg38GRCh38
GRCh37223,608,050 - 23,931,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36223,459,203 - 23,784,987 (+)NCBINCBI36Build 36hg18NCBI36
Celera223,450,093 - 23,772,958 (+)NCBICelera
Cytogenetic Map2p24.1NCBI
HuRef223,348,544 - 23,671,428 (+)NCBIHuRef
CHM1_1223,537,649 - 23,861,192 (+)NCBICHM1_1
T2T-CHM13v2.0223,420,561 - 23,743,675 (+)NCBIT2T-CHM13v2.0
Klhl29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39125,127,465 - 5,425,682 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl125,127,472 - 5,425,682 (-)EnsemblGRCm39 Ensembl
GRCm38125,077,465 - 5,375,682 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl125,077,472 - 5,375,682 (-)EnsemblGRCm38mm10GRCm38
MGSCv37125,084,271 - 5,382,488 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36125,103,477 - 5,402,008 (-)NCBIMGSCv36mm8
Celera125,000,387 - 5,299,043 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map122.28NCBI
Klhl29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8633,805,922 - 34,110,055 (-)NCBIGRCr8
mRatBN7.2628,086,489 - 28,390,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl628,086,489 - 28,390,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx628,378,751 - 28,682,882 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0628,694,651 - 28,998,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0628,169,174 - 28,473,301 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0629,178,858 - 29,483,460 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl629,178,858 - 29,483,460 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0640,403,632 - 40,707,087 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4628,387,843 - 28,704,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1628,392,428 - 28,706,901 (-)NCBI
Celera627,553,938 - 27,856,658 (-)NCBICelera
Cytogenetic Map6q14NCBI
KLHL29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212102,806,410 - 103,133,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A102,810,375 - 103,137,914 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A23,382,886 - 23,710,132 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A23,578,102 - 23,811,204 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A23,628,955 - 23,811,204 (+)Ensemblpanpan1.1panPan2
KLHL29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11717,945,260 - 18,250,942 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1717,945,254 - 18,248,936 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1717,844,622 - 18,150,204 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01718,115,299 - 18,421,277 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1718,198,901 - 18,421,189 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11717,957,229 - 18,262,871 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01717,964,343 - 18,270,034 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01718,006,133 - 18,312,297 (+)NCBIUU_Cfam_GSD_1.0
Klhl29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629262,384,345 - 62,663,916 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364938,175,649 - 8,455,220 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364938,175,649 - 8,303,569 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLHL29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3114,871,164 - 115,177,466 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13114,871,659 - 114,937,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23122,136,541 - 122,441,282 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KLHL29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11483,941,173 - 84,261,880 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1483,943,146 - 84,261,785 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604527,897,744 - 28,219,720 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klhl29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247385,918,437 - 6,112,925 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247385,845,272 - 6,112,887 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008099   ⟹   ENSCLAP00000007979
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554695,863,980 - 5,993,610 (+)Ensembl
RefSeq Acc Id: XM_005400361   ⟹   XP_005400418
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554695,831,731 - 5,993,610 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400364   ⟹   XP_005400421
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554695,897,561 - 5,993,610 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013522637   ⟹   XP_013378091
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554695,787,946 - 5,993,610 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400418 (Get FASTA)   NCBI Sequence Viewer  
  XP_005400421 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378091 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007979
  ENSCLAP00000007979.1
Reference Protein Sequences
RefSeq Acc Id: XP_005400418   ⟸   XM_005400361
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YLR7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400421   ⟸   XM_005400364
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013378091   ⟸   XM_013522637
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YLR7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007979   ⟸   ENSCLAT00000008099
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005598 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008099 ENTREZGENE
  ENSCLAT00000008099.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene Klhl29 ENTREZGENE
PANTHER KELCH PROTEIN UniProtKB/TrEMBL
  KELCH-LIKE PROTEIN 29 UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt A0A8C2YLR7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Klhl29  kelch like family member 29    kelch-like family member 29  Symbol and/or name change 5135510 APPROVED