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Gene: SYNDIG1L (synapse differentiation inducing 1 like) Canis lupus familiaris

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Symbol:

SYNDIG1L

Name:

synapse differentiation inducing 1 like

RGD ID:

12141253

Description:

FOUND IN Golgi apparatus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

synapse differentiation-inducing gene protein 1-like; TMEM90A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	47,570,289 - 47,583,571 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	47,570,275 - 47,573,836 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	47,254,518 - 47,272,820 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	47,797,441 - 47,815,702 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	47,797,427 - 47,800,988 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	47,466,524 - 47,484,678 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	47,487,616 - 47,505,866 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	47,874,989 - 47,893,149 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

Golgi apparatus (ISO)

membrane (IBA,IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SYNDIG1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	47,570,289 - 47,583,571 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	47,570,275 - 47,573,836 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	47,254,518 - 47,272,820 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	47,797,441 - 47,815,702 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	47,797,427 - 47,800,988 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	47,466,524 - 47,484,678 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	47,487,616 - 47,505,866 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	47,874,989 - 47,893,149 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

SYNDIG1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	74,405,899 - 74,480,143 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	74,405,894 - 74,426,210 (-)	Ensembl			hg38	GRCh38
GRCh37	14	74,872,602 - 74,892,913 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	73,942,349 - 73,962,558 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	14	54,909,910 - 54,930,122 (-)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	55,039,931 - 55,060,036 (-)	NCBI		HuRef
CHM1_1	14	74,812,136 - 74,832,341 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	68,613,779 - 68,683,890 (-)	NCBI		T2T-CHM13v2.0

Syndig1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	84,724,051 - 84,745,720 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	84,724,051 - 84,745,605 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	84,677,277 - 84,698,947 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	84,677,277 - 84,698,831 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	86,018,228 - 86,039,757 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	85,567,026 - 85,588,555 (-)	NCBI		MGSCv36	mm8
Celera	12	86,132,908 - 86,154,460 (-)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	39.33	NCBI

Syndig1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	110,053,713 - 110,076,058 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	110,054,504 - 110,075,969 (-)	Ensembl				GRCr8
mRatBN7.2	6	104,318,096 - 104,344,989 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	104,323,424 - 104,344,891 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	104,492,018 - 104,513,444 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	104,791,108 - 104,812,538 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	104,160,676 - 104,182,100 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	6	111,315,452 - 111,336,892 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	6	110,724,977 - 110,746,419 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	6	108,518,577 - 108,540,019 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	6	107,670,628 - 107,692,056 (-)	NCBI		F344_StmMcwi
Rnor_6.0	6	108,392,837 - 108,415,187 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	108,393,628 - 108,415,093 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	117,134,046 - 117,156,622 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	108,719,898 - 108,741,367 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	102,148,305 - 102,169,778 (-)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

Syndig1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	1,091,744 - 1,095,652 (+)	Ensembl
ChiLan1.0	NW_004955523	1,092,463 - 1,095,567 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYNDIG1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	75,488,574 - 75,509,250 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	74,705,080 - 74,725,756 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	54,957,901 - 54,978,582 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	73,805,990 - 73,826,055 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	73,805,990 - 73,826,055 (-)	Ensembl			panPan2	panpan1.1

Syndig1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	28,447,926 - 28,470,920 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	3,599,572 - 3,601,356 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	3,598,050 - 3,621,049 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYNDIG1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	97,658,301 - 97,679,795 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	97,658,299 - 97,679,796 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	103,500,823 - 103,522,298 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYNDIG1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	51,617,631 - 51,638,382 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	51,617,437 - 51,638,659 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	39,854,428 - 39,875,304 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Syndig1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	27,221,116 - 27,241,879 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	27,221,110 - 27,242,657 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Syndig1l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	98,784,625 - 98,806,869 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in SYNDIG1L
161 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
3	2	2	21	13	5	3	4	13	11	12	13	5

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003639203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022422215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038484473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038484474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038599273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000026785 ⟹ ENSCAFP00000024888

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	47,570,275 - 47,573,836 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000070192 ⟹ ENSCAFP00000056426

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	47,570,275 - 47,573,836 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845025500 ⟹ ENSCAFP00845020078

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	47,797,427 - 47,800,988 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845025508 ⟹ ENSCAFP00845020083

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	47,797,427 - 47,800,988 (-)	Ensembl

RefSeq Acc Id:

XM_022422215 ⟹ XP_022277923

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	47,570,289 - 47,574,824 (-)	NCBI
Dog10K_Boxer_Tasha	8	47,254,518 - 47,272,820 (-)	NCBI

Sequence:

show sequence

CCCCCAGGAAAAACCAACAGCTGTGAGCACATGGCCCATACTGAGCACTGAGCTCTGAGCTAAG
CGCAGTCCCATCCAACCTTCAAACAAACCCTCCCTCAACCCAATATCCCACCTACTACCAAGTC
CTGTCACTATCTCCCCACTATTGAGTTCCAGTTGTCCTCAGCTGACCTAAGGCTGTAGCAAAGT
CCCCTCCGGGTGTAGTAAACCAGCCCTCTCTCCAAGCCAATCCCCATACACAGCCACAGGAAGA
CTTCTAGACCCAAATCCCATCCTATCGCTCCTGCCAAGATCCCTGAAGCCCTCTTAAACCTAAA
CGGGGCTGCTCCCTCTGGCCCCACACCCTATCTCACCTCTTCCTCTGTACCCTGAGAGATAGCA
GCCTTCTCCCAGGCTCTCAGAACCACCTTCCTCCATCTGGCCTCTGCATGAAATGTGATCCCCC
TCCCCTTGCCTTGCCAACTGGTCCTTTTCCTTCGGACCTTCGATGCCAAAGCTTTCCCTATACC
TTTGTGTCACTTCTGTCCCTTGCACGTTCTCACTCCACTTGCCATCCTTCCTTTTCTGGACAGG
TATCTTCACCACTGTGAGCTCCGTGAAGACAGCGTGCATCCTCTGTCCTCTTCCTGTTCCCTGC
CTTTCTTGCCTTCGTGTCTGCAGCACCTGTACGGTGCCTGGCAAGGAGCTGATGCTTGACCATT
ATGTTGACAGGATAGATGACTGAGCCAACTCTATGAGCAGGCTCTCTGAGGACGGCTCAGCTGG
CCCAGTCTCCCCTCCCCAGAGCTGCCCCCGGAACCATGGAGAGTCTGAGTGAACTGCAGAACCC
TCTGCTGCCTCGGACCCCCACCCCCCTCCATGGCCCCTACCCCTACCCCGAGGCTTCACCCAGC
TGGTCATGCCAGGAGAAGCTCTACTCCTACCTCCTGGGTGGTGCTGGCTCTGCTCGCACCCACC
AGCTCCTGGATCCGGGATCCCTACAGCTGGCCGTGGAGGCCTGGTACAGGCCCAGCTGCCTCCT
GGGGAGGGACAAGGTCAAGGAACCCAGAGCCAGCAGCTGTGAGACCAGCTTCACAGAGAACAGG
GAGCTCCAGGTGGGGCCCACAGAGCGCTCCACAGAACCTGGCCAAGTAGAAGAGGATATCACAA
TCCAGACTGTGTCCTACGGGGTTCAAGAGGAACTGCAGGGCCAGGAGAATGACCAGGAGGAGGA
GGACGAGAGTGATATGACCTCGACAGACAGTGAAAGTGAAGACAACTTCGTGGCGCTGCCCCCC
AGGGACCACCTGGGCCTTACTATCTTCTCCATGCTCTGCTGCTTCTGGCCCCTGGGCATTGCTG
CCTTCTACTTTTCCCAGGGGACCAGCAAGGCCATCTCCAAGGGAGACTTCCGCCTGGCCAGCAC
CACCTCCCGCAGGGCCCTCTTCCTGGCCACACTCTCCATCGCTGTGGGCGCCGGTCTCTATGTG
GCTGTGGTAGTGGCTCTGGCAGCTTACATGTCCCAGAATGGCCATGGCTAGTGGCCAGCAGGGC
CTGGCATCCTGACTCCCCTGCTCCAACTGAGGAGGCCGTGGGGCTTAGGGTTGCAGACCCTCTG
GAGAGCCCTGGCCCCTCAAGACAACCTGCAACCCCAGCTTGTTGAGGGGAGGCCTCCCAGGCTG
CAGCCTGCAGGGCTCCACCATCACTTCTTCTTGTCCACAGCCCCCAGCCCCAGAACAGAGCCAG
GGGCACCACTCTCTAGCCCAGGCTATGTCAGGAAGCAGGAGAGGGTAAGGCTGCCCACCAAGCC
ATCCAGGCAGGACCTACCTCTGGCTTGAGGCTGGCTAGGAGTTCAGCCTATCCTGCCCACCCCT
AGAGGGTCACCTGCCCTGCCAGCAACCCACTCCCCAACTCTGTCAGCCTCACCACAGAGAAAAA
GCAAGAGTTTACTGGGAGAGAAAAGGACAACTAGGGGCAAGAATGTGACCCAGTTCTTTTGGCT
ATTAGAAGTCTCCATCTAAGGACAATCTGAGCTTCCCCAACTCCACTCTCTGGCCCCATGAGGC
CAAGACTCCAGCCAACCAGGAGGAAAATACAAAGACACAGGGGCCCCGAGCTCTTTCTGGTTCT
CTCCTGTAGGTTTGTAAGACACTGTAGATTCTAGATAGTGAAGGAGCATCTCAGGCATGTAAAG
TGCAGCCAGGGCAGGTTCTCAGAGCTTCCTCGTGCAGGAACTAAAGGCAGATGTGATGACAGAG
TCCTGAAATATTGCCAGACCCCATGGGCCTCCCCAGTCCCTTCCTGGTCCCTGCCCCACCATCC
TTTTCTGGGCTCCTCCTAGGTGGCCCTGAGCTAATGCCATCCCAAGAGAGAGTGTCATCAGCCC
ACAGCCACGAAGCATAGGGCCCCAGACCCATCCCTGTGGGAAACCAGTGAGGCAAGACTCTGGG
ACATAGCATAAATGAGGGGAGGGATCCAGGACTGGCATGGCTGCTAAGCAGCTAGCAGTGCCCA
GAAGGCTTCCTGGAAGAGGTGTTCCTTGAGTAAGGCCTAAAAGGATGAGGAGAATTTATCTAGG
GGATTCGTTTTCCCATAACCCTTAGTATTCATGACCAGGGACATGGCAGGAGTCTCCCAAGCTA
TTTGGATTATGCCTCAAGCATCTGGGCTGGAGGCAAACTGTAGCCATTTCTGAGGGCTCCACCA
ACTCAGAGAAGATGGTTGGGCAGCACATCTCTCAAAGACCAGTGATATTTTCCTACTTCTAAAT
ACTGGGGGTCAGTGGTGGCACCCTAGTCCGTCCCTGCCCAGAACTGCTCTCAACACCCCCAGCC
ACTAGGGAACATCCAGAATTTTAGAGGCAACCAGAAGGGCAATACATTGGGAGGGCAGGCCTGT
CTGGGCTCAAGCAAAAGACCCAACTGTGCTGGGGATCTTGGGACTTGGTCATTCCTAAGCCACA
TCCAGAGCCCAGGGCTGTGGATGTACCACTGACCCACCTTGGCCCACCCACTGCTCCCTGCATC
TCCTGAAACCCCACAGGCCTAGGATCAGCAGTTTTAATATCCCATTATTGTATATATTTATCCT
TGTAATAAACATTTCTGTAACACTA

hide sequence

RefSeq Acc Id:

XM_038484473 ⟹ XP_038340401

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	47,466,524 - 47,484,678 (-)	NCBI

RefSeq Acc Id:

XM_038484474 ⟹ XP_038340402

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	47,466,524 - 47,484,678 (-)	NCBI

RefSeq Acc Id:

XM_038544048 ⟹ XP_038399976

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	47,874,989 - 47,893,149 (-)	NCBI

RefSeq Acc Id:

XM_038544049 ⟹ XP_038399977

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	47,874,989 - 47,893,149 (-)	NCBI

RefSeq Acc Id:

XM_038599273 ⟹ XP_038455201

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	8	47,254,518 - 47,272,820 (-)	NCBI

RefSeq Acc Id:

XM_038608172 ⟹ XP_038464100

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	47,487,616 - 47,505,866 (-)	NCBI

RefSeq Acc Id:

XM_038608173 ⟹ XP_038464101

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	47,487,616 - 47,505,866 (-)	NCBI

RefSeq Acc Id:

XM_038672972 ⟹ XP_038528900

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	47,797,441 - 47,815,702 (-)	NCBI

RefSeq Acc Id:

XM_038672973 ⟹ XP_038528901

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	47,797,441 - 47,815,702 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_022277923	(Get FASTA)	NCBI Sequence Viewer
	XP_038340401	(Get FASTA)	NCBI Sequence Viewer
	XP_038340402	(Get FASTA)	NCBI Sequence Viewer
	XP_038399976	(Get FASTA)	NCBI Sequence Viewer
	XP_038399977	(Get FASTA)	NCBI Sequence Viewer
	XP_038455201	(Get FASTA)	NCBI Sequence Viewer
	XP_038464100	(Get FASTA)	NCBI Sequence Viewer
	XP_038464101	(Get FASTA)	NCBI Sequence Viewer
	XP_038528900	(Get FASTA)	NCBI Sequence Viewer
	XP_038528901	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000024888.3
	ENSCAFP00000056426.1
	ENSCAFP00030033536.1
	ENSCAFP00040018136.1
	ENSCAFP00845020078.1
	ENSCAFP00845020083
	ENSCAFP00845020083.1

RefSeq Acc Id:

XP_022277923 ⟸ XM_022422215

- UniProtKB:

A0A8I3NT56 (UniProtKB/TrEMBL), A0A8P0NIH6 (UniProtKB/TrEMBL), A0A8C0P9P6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MESLSELQNPLLPRTPTPLHGPYPYPEASPSWSCQEKLYSYLLGGAGSARTHQLLDPGSLQLAV
EAWYRPSCLLGRDKVKEPRASSCETSFTENRELQVGPTERSTEPGQVEEDITIQTVSYGVQEEL
QGQENDQEEEDESDMTSTDSESEDNFVALPPRDHLGLTIFSMLCCFWPLGIAAFYFSQGTSKAI
SKGDFRLASTTSRRALFLATLSIAVGAGLYVAVVVALAAYMSQNGHG

hide sequence

Ensembl Acc Id:

ENSCAFP00000056426 ⟸ ENSCAFT00000070192

Ensembl Acc Id:

ENSCAFP00000024888 ⟸ ENSCAFT00000026785

RefSeq Acc Id:

XP_038340402 ⟸ XM_038484474

RefSeq Acc Id:

XP_038340401 ⟸ XM_038484473

RefSeq Acc Id:

XP_038464101 ⟸ XM_038608173

RefSeq Acc Id:

XP_038464100 ⟸ XM_038608172

RefSeq Acc Id:	XP_038528901 ⟸ XM_038672973
- UniProtKB:	A0A8I3NT56 (UniProtKB/TrEMBL), A0A8P0NIH6 (UniProtKB/TrEMBL), A0A8C0P9P6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038528900 ⟸ XM_038672972
- UniProtKB:	A0A8I3NT56 (UniProtKB/TrEMBL), A0A8P0NIH6 (UniProtKB/TrEMBL), A0A8C0P9P6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038455201 ⟸ XM_038599273
- UniProtKB:	A0A8I3NT56 (UniProtKB/TrEMBL), A0A8P0NIH6 (UniProtKB/TrEMBL), A0A8C0P9P6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038399977 ⟸ XM_038544049
- UniProtKB:	A0A8C0P9P6 (UniProtKB/TrEMBL), A0A8C0YVJ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038399976 ⟸ XM_038544048
- UniProtKB:	A0A8C0P9P6 (UniProtKB/TrEMBL), A0A8C0YVJ8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845020083 ⟸ ENSCAFT00845025508

Ensembl Acc Id:

ENSCAFP00845020078 ⟸ ENSCAFT00845025500

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000016931	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030020943	UniProtKB/TrEMBL
	ENSCAFG00040011306	UniProtKB/TrEMBL
	ENSCAFG00845014257	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000026785.5	UniProtKB/TrEMBL
	ENSCAFT00000070192.2	UniProtKB/TrEMBL
	ENSCAFT00030038440.1	UniProtKB/TrEMBL
	ENSCAFT00040020891.1	UniProtKB/TrEMBL
	ENSCAFT00845025500.1	UniProtKB/TrEMBL
	ENSCAFT00845025508	ENTREZGENE
	ENSCAFT00845025508.1	UniProtKB/TrEMBL
InterPro	CD225/Dispanin_fam	UniProtKB/TrEMBL
NCBI Gene	SYNDIG1L	ENTREZGENE
PANTHER	SYNAPSE DIFFERENTIATION-INDUCING GENE PROTEIN 1-LIKE	UniProtKB/TrEMBL
	UPF0338 PROTEIN	UniProtKB/TrEMBL
Pfam	CD225	UniProtKB/TrEMBL
UniProt	A0A8C0P9P6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0YVJ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NN94_CANLF	UniProtKB/TrEMBL
	A0A8I3NT56	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NIH6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0P5P6_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:47026	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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