Syndig1l (synapse differentiation inducing 1 like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Syndig1l (synapse differentiation inducing 1 like) Ictidomys tridecemlineatus
Analyze
Symbol: Syndig1l
Name: synapse differentiation inducing 1 like
RGD ID: 12569885
Description: ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Niemann-Pick disease type C1 (ortholog); FOUND IN Golgi apparatus (inferred); intracellular membrane-bounded organelle (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synapse differentiation inducing 1 like, transcript variant X1; synapse differentiation inducing 1 like, transcript variant X2; synapse differentiation-inducing gene protein 1-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864028,447,926 - 28,470,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364883,599,572 - 3,601,356 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364883,598,050 - 3,621,049 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Syndig1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864028,447,926 - 28,470,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364883,599,572 - 3,601,356 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364883,598,050 - 3,621,049 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNDIG1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381474,405,899 - 74,480,143 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1474,405,894 - 74,426,210 (-)EnsemblGRCh38hg38GRCh38
GRCh371474,872,602 - 74,892,913 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361473,942,349 - 73,962,558 (-)NCBINCBI36Build 36hg18NCBI36
Celera1454,909,910 - 54,930,122 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1455,039,931 - 55,060,036 (-)NCBIHuRef
CHM1_11474,812,136 - 74,832,341 (-)NCBICHM1_1
T2T-CHM13v2.01468,613,779 - 68,683,890 (-)NCBIT2T-CHM13v2.0
Syndig1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391284,724,051 - 84,745,720 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1284,724,051 - 84,745,605 (-)EnsemblGRCm39 Ensembl
GRCm381284,677,277 - 84,698,947 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1284,677,277 - 84,698,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv371286,018,228 - 86,039,757 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361285,567,026 - 85,588,555 (-)NCBIMGSCv36mm8
Celera1286,132,908 - 86,154,460 (-)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1239.33NCBI
Syndig1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86110,053,713 - 110,076,058 (-)NCBIGRCr8
mRatBN7.26104,318,096 - 104,344,989 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6104,323,424 - 104,344,891 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6104,492,018 - 104,513,444 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06104,791,108 - 104,812,538 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06104,160,676 - 104,182,100 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06108,392,837 - 108,415,187 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6108,393,628 - 108,415,093 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06117,134,046 - 117,156,622 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46108,719,898 - 108,741,367 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6102,148,305 - 102,169,778 (-)NCBICelera
Cytogenetic Map6q31NCBI
Syndig1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555231,091,744 - 1,095,652 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555231,092,463 - 1,095,567 (+)NCBIChiLan1.0ChiLan1.0
SYNDIG1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21575,488,574 - 75,509,250 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11474,705,080 - 74,725,756 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01454,957,901 - 54,978,582 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11473,805,990 - 73,826,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1473,805,990 - 73,826,055 (-)Ensemblpanpan1.1panPan2
SYNDIG1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1847,570,289 - 47,583,571 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl847,570,275 - 47,573,836 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,254,518 - 47,272,820 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0847,797,441 - 47,815,702 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl847,797,427 - 47,800,988 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1847,466,524 - 47,484,678 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0847,487,616 - 47,505,866 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0847,874,989 - 47,893,149 (-)NCBIUU_Cfam_GSD_1.0
SYNDIG1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl797,658,301 - 97,679,795 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1797,658,299 - 97,679,796 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27103,500,823 - 103,522,298 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYNDIG1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12451,617,631 - 51,638,382 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2451,617,437 - 51,638,659 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605339,854,428 - 39,875,304 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syndig1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473427,221,116 - 27,241,879 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473427,221,110 - 27,242,657 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000007973   ⟹   ENSSTOP00000007136
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364883,599,572 - 3,601,356 (-)Ensembl
RefSeq Acc Id: XM_005321233   ⟹   XP_005321290
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864028,447,934 - 28,470,920 (+)NCBI
SpeTri2.0NW_0049364883,598,050 - 3,621,049 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021723772   ⟹   XP_021579447
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864028,447,926 - 28,470,920 (+)NCBI
SpeTri2.0NW_0049364883,598,050 - 3,621,049 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321290 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579447 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007136.3
GenBank Protein KAG3260701 (Get FASTA)   NCBI Sequence Viewer  
  KAG3260702 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005321290   ⟸   XM_005321233
- UniProtKB: I3MAS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579447   ⟸   XM_021723772
- UniProtKB: I3MAS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000007136   ⟸   ENSSTOT00000007973


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007981 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007973.3 UniProtKB/TrEMBL
InterPro CD225/Dispanin_fam UniProtKB/TrEMBL
NCBI Gene Syndig1l ENTREZGENE
PANTHER SYNAPSE DIFFERENTIATION-INDUCING GENE PROTEIN 1-LIKE UniProtKB/TrEMBL
  UPF0338 PROTEIN UniProtKB/TrEMBL
Pfam CD225 UniProtKB/TrEMBL
UniProt I3MAS3 ENTREZGENE, UniProtKB/TrEMBL