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Gene: SLC39A1 (solute carrier family 39 member 1) Canis lupus familiaris

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Symbol:

SLC39A1

Name:

solute carrier family 39 member 1

RGD ID:

12122019

Description:

ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN embryonic cranial skeleton morphogenesis (ortholog); in utero embryonic development (ortholog); limb development (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); respiratory allergy (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

solute carrier family 39 (zinc transporter), member 1; zinc transporter ZIP1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	43,171,219 - 43,174,876 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	43,171,287 - 43,174,036 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,661,635 - 42,665,278 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	43,041,658 - 43,045,302 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	43,041,740 - 43,045,301 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	42,820,327 - 42,823,971 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	42,873,597 - 42,877,237 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	43,157,835 - 43,161,479 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Prostatic Neoplasms (ISO)

respiratory allergy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

embryonic cranial skeleton morphogenesis (ISO)

in utero embryonic development (ISO)

limb development (ISO)

metal ion transport (IEA)

transmembrane transport (IEA)

zinc ion transmembrane transport (IBA,IEA)

zinc ion transport (ISO)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IEA)

Molecular Function

metal ion transmembrane transporter activity (IEA)

protein binding (ISO)

signaling receptor binding (ISO)

zinc ion transmembrane transporter activity (IBA,IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SLC39A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	43,171,219 - 43,174,876 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	43,171,287 - 43,174,036 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,661,635 - 42,665,278 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	43,041,658 - 43,045,302 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	43,041,740 - 43,045,301 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	42,820,327 - 42,823,971 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	42,873,597 - 42,877,237 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	43,157,835 - 43,161,479 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

SLC39A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	153,959,110 - 153,968,184 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	153,959,099 - 153,968,667 (-)	Ensembl			hg38	GRCh38
GRCh37	1	153,931,586 - 153,940,660 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	152,198,212 - 152,206,812 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	150,744,661 - 150,753,261	NCBI
Celera	1	127,003,339 - 127,011,938 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	125,294,161 - 125,303,246 (-)	NCBI		HuRef
CHM1_1	1	155,327,888 - 155,336,973 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	153,096,371 - 153,105,445 (-)	NCBI		T2T-CHM13v2.0

Slc39a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	90,155,512 - 90,160,923 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	90,155,479 - 90,160,919 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	90,248,190 - 90,253,613 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	90,248,172 - 90,253,612 (+)	Ensembl			mm10	GRCm38
MGSCv37	3	90,052,114 - 90,057,534 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	90,334,157 - 90,339,539 (+)	NCBI		MGSCv36	mm8
MGSCv36	3	91,093,484 - 91,099,116 (+)	NCBI		MGSCv36	mm8
Celera	3	90,285,048 - 90,290,812 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.21	NCBI

Slc39a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,001,052 - 178,006,689 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	178,001,119 - 178,006,689 (+)	Ensembl				GRCr8
mRatBN7.2	2	175,703,413 - 175,709,063 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	175,703,441 - 175,709,058 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	182,843,537 - 182,849,109 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	180,865,926 - 180,871,499 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,466,212 - 175,471,775 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	2	177,166,937 - 177,172,500 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	2	177,490,083 - 177,495,648 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	2	177,110,741 - 177,116,305 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	2	177,193,138 - 177,198,700 (+)	NCBI		F344_StmMcwi
Rnor_6.0	2	189,609,766 - 189,615,367 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,609,800 - 189,615,366 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	209,042,625 - 209,048,222 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	182,490,501 - 182,496,068 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	169,638,848 - 169,644,414 (+)	NCBI		Celera
RGSC_v3.1	2	182,440,596 - 182,445,640 (+)	NCBI
Cytogenetic Map	2	q34	NCBI

Slc39a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	554,947 - 560,336 (-)	Ensembl
ChiLan1.0	NW_004955545	556,210 - 559,732 (-)	NCBI	ChiLan1.0	ChiLan1.0

Slc39a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	24,674,699 - 24,678,289 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	3,704,723 - 3,708,677 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	3,704,738 - 3,708,671 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC39A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	95,729,347 - 95,733,819 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	95,729,480 - 95,733,824 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	104,630,406 - 104,635,131 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC39A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	9,847,928 - 9,852,998 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	9,847,968 - 9,853,413 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	9,218,019 - 9,223,131 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc39a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	3,260,681 - 3,264,959 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624885	3,260,673 - 3,264,636 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc39a1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	63,387,601 - 63,393,285 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in SLC39A1
23 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003639152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005622808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022421392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022421393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038481896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038481897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038481898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038543280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038543281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038543282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038572533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038607388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038607389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038607390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000027559 ⟹ ENSCAFP00000025629

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	7	43,171,287 - 43,174,036 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845029192 ⟹ ENSCAFP00845022959

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	7	43,041,740 - 43,045,301 (+)	Ensembl

RefSeq Acc Id:

XM_003639152 ⟹ XP_003639200

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	7	43,171,220 - 43,174,876 (+)	NCBI
Dog10K_Boxer_Tasha	7	42,661,635 - 42,665,278 (+)	NCBI

Sequence:

show sequence

GCCCCCCCTGGGGCCGTCATTGGCCCCCGGAGGCGAGGGGGCGGGGCGCGGCGGGGCAGGGTCC
CGAGTCGCGTAGGATCCCGGCGGCTGCGGCGGAGGGGCCTCTGGCGAGGTGTGACCGTCGTTGG
AGCAGCCGCAGCCACCATGGGGCCCTGGGGAGAGCCAGAGCTCCTGGTGTGGCGCCCGGAGGCG
GTGGCCTCCGAACCCCCAGGGCCCGTGGGGCTGGAGGTGAAAATGGGGGCCCTGGTGCTGCTGC
TGTTGCTGACGCTCCTCTGCAGTCTCGTGCCCATCTGTGTGCTGCGCCGGCCGGGGGCTGGTCC
TGAAGCCTTAGCCTCCCGCCAAAAAGCCTTGAGCCTAGTAAGCTGCTTCGCAGGGGGTGTCTTT
CTGGCTACTTGTCTCCTGGACCTACTGCCTGACTACCTGGCTGCCATAGATGAGGCCTTGGCAG
CCCTGCACGTGACGCTCCAGTTCCCCCTACAAGAGTTTATCCTGGCAATGGGCTTCTTCCTAGT
CCTGGTGATGGAGCAGATCACACTAGCTTACAAGGAGCAGTCGGGGCCACCACCTCGAGAGGAG
ACGAGGGCGCTGCTGGGAACGGCAAATGGTGGGCCACAGCACTGGCACGATGGGCCAGGGGTTC
CACAGGCAGGTGGAGCTCCAGCAGCCCCCTCAGCCCTGCGTGCCTGCGTACTGGTCTTCTCCCT
GGCCCTGCACTCGGTGTTCGAAGGATTGGCAGTGGGGCTGCAGCGAGACCGGGCTCGGGCCATG
GAGCTGTGCCTGGCTTTGCTGCTCCACAAGGGTATTCTGGCAGTCAGCTTGTCCCTGCGGCTGC
TGCAGAGCCATCTGCGAGCGCAGGTGGTAGCTGGTTGTGGGATCCTCTTCTCATGCATGACACC
TCTGGGCATTGGGCTGGGTGCAGCTCTGGCAGAGTCTGCGGGGCCACTGCACCAGCTGGCCCAG
TCTGTGCTGGAGGGCATGGCGGCTGGCACCTTTCTCTATATCACCTTCCTGGAAATCCTGCCCC
AGGAGCTGGCCGCATCTGAGCAGAGGATCCTCAAGGTCATCCTGCTCCTCGCAGGCTTTGCCCT
GCTCACTGGCCTACTCTTCATCCAAGTCTAAGGGCTCCAGGTGCTCTTCCCCAGGGTAAGCAGG
AGCGGGGAAGGGAGGTACTGAGGATCCAAGGGTTCTCCGGGAGGTAGGGATGGAGTCTTTGGGA
CTACCTGACCAATGACAGGGATGTGGTAGACAAGAGCCTGGCCCCAAGGGACTGGGGATAGTCA
GGTGACTAAAGATGACTAGTGATTCCTATTGGGGACGACTGCTAGAGTCCAGGGTCAGATACTA
CATACAGGGCCGAGCTGACACTGGGAAGGCTGCTGTGGGATGGAGGTGTAGAGAAGGCACAGCT
CCAAGTCAGCAGTCCTGCGTCTAGCCCAGTTCAGCCCTCTGTCTCTTGAGGTGGAGTGGACTTC
TACTACTCTTTCTTAGCTCCTAATCTATCTTCTGCTTCCTTTCTTCCAGGGAACTAGTGCCAAA
TGGCCTTTTCCTGCCAGTTTTGGTACCTTTTCTGGCTTCTCTATTCCTGCTCACTTCTCTATTT
TTAAAGTGCCAAATAAATCCCTTCCCCTTTGTCAGAAAGCACAGTGATGGCCCTGAGCCCTACC
TGAGACCTCATGGGAGGGGCCCGGCTTGCTCTTTGTTAGGGGCAGCAATGTTTGCTGAGTTGAG
GCTGGCGGGGGTGGTGGCAGAGCTCCTGCGCCCTAGGAGGACGATAGGGACATGGTGCCCCGTG
CCCAGGTGATAAATACTGAGCTGCCAAAACTTTTTATATCAGAGGAGCCCAAGGGGAAGGGGGG
GAAGGCTCACCCCCGCTATTTTTGGGGAGGGAGGGCTGTGGATAGAGCCATGTTCTCCAGAATC
TATTTTACTAACTGACCTGTTTTGGGACTTGTTACCCGAATAAAAGCAGTTTCTATACGTTTG

hide sequence

RefSeq Acc Id:

XM_005622808 ⟹ XP_005622865

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	7	43,171,265 - 43,174,876 (+)	NCBI
Dog10K_Boxer_Tasha	7	42,661,671 - 42,665,278 (+)	NCBI

Sequence:

show sequence

GCGCGGCGGGGCAGGGTCCCGAGTCGCGTAGGATCCCGGCGGCTGCGGCGGAGGGGCCTCTGGC
GAGTGGCCAATACCCCACTTTGTCTTAGGTGTGACCGTCGTTGGAGCAGCCGCAGCCACCATGG
GGCCCTGGGGAGAGCCAGAGCTCCTGGTGTGGCGCCCGGAGGCGGTGGCCTCCGAACCCCCAGG
GCCCGTGGGGCTGGAGGTGAAAATGGGGGCCCTGGTGCTGCTGCTGTTGCTGACGCTCCTCTGC
AGTCTCGTGCCCATCTGTGTGCTGCGCCGGCCGGGGGCTGGTCCTGAAGCCTTAGCCTCCCGCC
AAAAAGCCTTGAGCCTAGTAAGCTGCTTCGCAGGGGGTGTCTTTCTGGCTACTTGTCTCCTGGA
CCTACTGCCTGACTACCTGGCTGCCATAGATGAGGCCTTGGCAGCCCTGCACGTGACGCTCCAG
TTCCCCCTACAAGAGTTTATCCTGGCAATGGGCTTCTTCCTAGTCCTGGTGATGGAGCAGATCA
CACTAGCTTACAAGGAGCAGTCGGGGCCACCACCTCGAGAGGAGACGAGGGCGCTGCTGGGAAC
GGCAAATGGTGGGCCACAGCACTGGCACGATGGGCCAGGGGTTCCACAGGCAGGTGGAGCTCCA
GCAGCCCCCTCAGCCCTGCGTGCCTGCGTACTGGTCTTCTCCCTGGCCCTGCACTCGGTGTTCG
AAGGATTGGCAGTGGGGCTGCAGCGAGACCGGGCTCGGGCCATGGAGCTGTGCCTGGCTTTGCT
GCTCCACAAGGGTATTCTGGCAGTCAGCTTGTCCCTGCGGCTGCTGCAGAGCCATCTGCGAGCG
CAGGTGGTAGCTGGTTGTGGGATCCTCTTCTCATGCATGACACCTCTGGGCATTGGGCTGGGTG
CAGCTCTGGCAGAGTCTGCGGGGCCACTGCACCAGCTGGCCCAGTCTGTGCTGGAGGGCATGGC
GGCTGGCACCTTTCTCTATATCACCTTCCTGGAAATCCTGCCCCAGGAGCTGGCCGCATCTGAG
CAGAGGATCCTCAAGGTCATCCTGCTCCTCGCAGGCTTTGCCCTGCTCACTGGCCTACTCTTCA
TCCAAGTCTAAGGGCTCCAGGTGCTCTTCCCCAGGGTAAGCAGGAGCGGGGAAGGGAGGTACTG
AGGATCCAAGGGTTCTCCGGGAGGTAGGGATGGAGTCTTTGGGACTACCTGACCAATGACAGGG
ATGTGGTAGACAAGAGCCTGGCCCCAAGGGACTGGGGATAGTCAGGTGACTAAAGATGACTAGT
GATTCCTATTGGGGACGACTGCTAGAGTCCAGGGTCAGATACTACATACAGGGCCGAGCTGACA
CTGGGAAGGCTGCTGTGGGATGGAGGTGTAGAGAAGGCACAGCTCCAAGTCAGCAGTCCTGCGT
CTAGCCCAGTTCAGCCCTCTGTCTCTTGAGGTGGAGTGGACTTCTACTACTCTTTCTTAGCTCC
TAATCTATCTTCTGCTTCCTTTCTTCCAGGGAACTAGTGCCAAATGGCCTTTTCCTGCCAGTTT
TGGTACCTTTTCTGGCTTCTCTATTCCTGCTCACTTCTCTATTTTTAAAGTGCCAAATAAATCC
CTTCCCCTTTGTCAGAAAGCACAGTGATGGCCCTGAGCCCTACCTGAGACCTCATGGGAGGGGC
CCGGCTTGCTCTTTGTTAGGGGCAGCAATGTTTGCTGAGTTGAGGCTGGCGGGGGTGGTGGCAG
AGCTCCTGCGCCCTAGGAGGACGATAGGGACATGGTGCCCCGTGCCCAGGTGATAAATACTGAG
CTGCCAAAACTTTTTATATCAGAGGAGCCCAAGGGGAAGGGGGGGAAGGCTCACCCCCGCTATT
TTTGGGGAGGGAGGGCTGTGGATAGAGCCATGTTCTCCAGAATCTATTTTACTAACTGACCTGT
TTTGGGACTTGTTACCCGAATAAAAGCAGTTTCTATACGTTTG

hide sequence

RefSeq Acc Id:

XM_038481896 ⟹ XP_038337824

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	7	42,820,327 - 42,823,971 (+)	NCBI

RefSeq Acc Id:

XM_038481897 ⟹ XP_038337825

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	7	42,820,377 - 42,823,971 (+)	NCBI

RefSeq Acc Id:

XM_038481898 ⟹ XP_038337826

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	7	42,820,363 - 42,823,971 (+)	NCBI

RefSeq Acc Id:

XM_038543280 ⟹ XP_038399208

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	7	43,157,835 - 43,161,479 (+)	NCBI

RefSeq Acc Id:

XM_038543281 ⟹ XP_038399209

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	7	43,157,885 - 43,161,479 (+)	NCBI

RefSeq Acc Id:

XM_038543282 ⟹ XP_038399210

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	7	43,157,871 - 43,161,479 (+)	NCBI

RefSeq Acc Id:

XM_038572533 ⟹ XP_038428461

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	7	42,661,685 - 42,665,278 (+)	NCBI

RefSeq Acc Id:

XM_038607388 ⟹ XP_038463316

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	7	42,873,597 - 42,877,237 (+)	NCBI

RefSeq Acc Id:

XM_038607389 ⟹ XP_038463317

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	7	42,873,643 - 42,877,237 (+)	NCBI

RefSeq Acc Id:

XM_038607390 ⟹ XP_038463318

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	7	42,873,629 - 42,877,237 (+)	NCBI

RefSeq Acc Id:

XM_038672083 ⟹ XP_038528011

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	7	43,041,658 - 43,045,302 (+)	NCBI

RefSeq Acc Id:

XM_038672084 ⟹ XP_038528012

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	7	43,041,708 - 43,045,302 (+)	NCBI

RefSeq Acc Id:

XM_038672085 ⟹ XP_038528013

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	7	43,041,694 - 43,045,302 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003639200	(Get FASTA)	NCBI Sequence Viewer
	XP_005622865	(Get FASTA)	NCBI Sequence Viewer
	XP_038337824	(Get FASTA)	NCBI Sequence Viewer
	XP_038337825	(Get FASTA)	NCBI Sequence Viewer
	XP_038337826	(Get FASTA)	NCBI Sequence Viewer
	XP_038399208	(Get FASTA)	NCBI Sequence Viewer
	XP_038399209	(Get FASTA)	NCBI Sequence Viewer
	XP_038399210	(Get FASTA)	NCBI Sequence Viewer
	XP_038428461	(Get FASTA)	NCBI Sequence Viewer
	XP_038463316	(Get FASTA)	NCBI Sequence Viewer
	XP_038463317	(Get FASTA)	NCBI Sequence Viewer
	XP_038463318	(Get FASTA)	NCBI Sequence Viewer
	XP_038528011	(Get FASTA)	NCBI Sequence Viewer
	XP_038528012	(Get FASTA)	NCBI Sequence Viewer
	XP_038528013	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000025629.3
	ENSCAFP00030035480.1
	ENSCAFP00030035492.1
	ENSCAFP00040004840.1
	ENSCAFP00845022959
	ENSCAFP00845022959.1

RefSeq Acc Id:

XP_003639200 ⟸ XM_003639152

- UniProtKB:

A0A8C0K8F6 (UniProtKB/TrEMBL), A0A8C0P1C3 (UniProtKB/TrEMBL), A0A8I3P500 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGPWGEPELLVWRPEAVASEPPGPVGLEVKMGALVLLLLLTLLCSLVPICVLRRPGAGPEALAS
RQKALSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVMEQ
ITLAYKEQSGPPPREETRALLGTANGGPQHWHDGPGVPQAGGAPAAPSALRACVLVFSLALHSV
FEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGL
GAALAESAGPLHQLAQSVLEGMAAGTFLYITFLEILPQELAASEQRILKVILLLAGFALLTGLL
FIQV

hide sequence

RefSeq Acc Id:

XP_005622865 ⟸ XM_005622808

- UniProtKB:

A0A8C0K8F6 (UniProtKB/TrEMBL), A0A8C0P1C3 (UniProtKB/TrEMBL), A0A8I3P500 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGPWGEPELLVWRPEAVASEPPGPVGLEVKMGALVLLLLLTLLCSLVPICVLRRPGAGPEALAS
RQKALSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVMEQ
ITLAYKEQSGPPPREETRALLGTANGGPQHWHDGPGVPQAGGAPAAPSALRACVLVFSLALHSV
FEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGL
GAALAESAGPLHQLAQSVLEGMAAGTFLYITFLEILPQELAASEQRILKVILLLAGFALLTGLL
FIQV

hide sequence

Ensembl Acc Id:

ENSCAFP00000025629 ⟸ ENSCAFT00000027559

RefSeq Acc Id:

XP_038337824 ⟸ XM_038481896

RefSeq Acc Id:

XP_038337826 ⟸ XM_038481898

RefSeq Acc Id:

XP_038337825 ⟸ XM_038481897

RefSeq Acc Id:

XP_038463316 ⟸ XM_038607388

RefSeq Acc Id:

XP_038463318 ⟸ XM_038607390

RefSeq Acc Id:

XP_038463317 ⟸ XM_038607389

RefSeq Acc Id:	XP_038528011 ⟸ XM_038672083
- UniProtKB:	A0A8C0K8F6 (UniProtKB/TrEMBL), A0A8C0P1C3 (UniProtKB/TrEMBL), A0A8I3P500 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038528013 ⟸ XM_038672085
- UniProtKB:	A0A8C0K8F6 (UniProtKB/TrEMBL), A0A8C0P1C3 (UniProtKB/TrEMBL), A0A8I3P500 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038528012 ⟸ XM_038672084
- UniProtKB:	A0A8C0K8F6 (UniProtKB/TrEMBL), A0A8C0P1C3 (UniProtKB/TrEMBL), A0A8I3P500 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038428461 ⟸ XM_038572533
- UniProtKB:	A0A8C0K8F6 (UniProtKB/TrEMBL), A0A8C0P1C3 (UniProtKB/TrEMBL), A0A8I3P500 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038399208 ⟸ XM_038543280
- UniProtKB:	A0A8C0K8F6 (UniProtKB/TrEMBL), A0A8C0P1C3 (UniProtKB/TrEMBL), A0A8I3P500 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038399210 ⟸ XM_038543282
- UniProtKB:	A0A8C0K8F6 (UniProtKB/TrEMBL), A0A8C0P1C3 (UniProtKB/TrEMBL), A0A8I3P500 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038399209 ⟸ XM_038543281
- UniProtKB:	A0A8C0K8F6 (UniProtKB/TrEMBL), A0A8C0P1C3 (UniProtKB/TrEMBL), A0A8I3P500 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845022959 ⟸ ENSCAFT00845029192

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000017398	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030022139	UniProtKB/TrEMBL
	ENSCAFG00040002964	UniProtKB/TrEMBL
	ENSCAFG00845016459	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000027559.5	UniProtKB/TrEMBL
	ENSCAFT00030040648.1	UniProtKB/TrEMBL
	ENSCAFT00030040661.1	UniProtKB/TrEMBL
	ENSCAFT00040005624.1	UniProtKB/TrEMBL
	ENSCAFT00845029192	ENTREZGENE
	ENSCAFT00845029192.1	UniProtKB/TrEMBL
InterPro	ZIP	UniProtKB/TrEMBL
KEGG Report	cfa:100855713	UniProtKB/TrEMBL
NCBI Gene	SLC39A1	ENTREZGENE
PANTHER	ZINC TRANSPORTER ZIP1	UniProtKB/TrEMBL
	ZINC/IRON TRANSPORTER	UniProtKB/TrEMBL
Pfam	Zip	UniProtKB/TrEMBL
UniProt	A0A8C0K8F6	ENTREZGENE
	A0A8C0P1B2_CANLF	UniProtKB/TrEMBL
	A0A8C0P1C3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P500	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:46400	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD