MIR31 (microRNA mir-31) - Rat Genome Database

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Gene: MIR31 (microRNA mir-31) Canis lupus familiaris
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Symbol: MIR31
Name: microRNA mir-31 (Ensembl:microRNA 31)
RGD ID: 12111467
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-31; microRNA 31
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11140,904,438 - 40,904,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1140,904,437 - 40,904,503 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1139,576,885 - 39,576,943 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01141,846,612 - 41,846,670 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11140,518,076 - 40,518,134 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01140,405,265 - 40,405,323 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01141,018,979 - 41,019,037 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:18392026  


Genomics

Comparative Map Data
MIR31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11140,904,438 - 40,904,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1140,904,437 - 40,904,503 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1139,576,885 - 39,576,943 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01141,846,612 - 41,846,670 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11140,518,076 - 40,518,134 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01140,405,265 - 40,405,323 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01141,018,979 - 41,019,037 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
MIR31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38921,512,115 - 21,512,185 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl921,512,115 - 21,512,185 (-)Ensemblhg38GRCh38
GRCh37921,512,114 - 21,512,184 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36921,502,113 - 21,502,183 (-)NCBIBuild 36Build 36hg18NCBI36
Celera921,450,429 - 21,450,499 (-)NCBICelera
Cytogenetic Map9p21.3NCBI
HuRef921,475,518 - 21,475,588 (-)NCBIHuRef
CHM1_1921,511,915 - 21,511,985 (-)NCBICHM1_1
T2T-CHM13v2.0921,526,301 - 21,526,371 (-)NCBIT2T-CHM13v2.0
Mir31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39488,828,794 - 88,828,899 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl488,828,794 - 88,828,899 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38488,910,557 - 88,910,662 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl488,910,557 - 88,910,662 (-)Ensemblmm10GRCm38
MGSCv37488,556,461 - 88,556,566 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera487,392,515 - 87,392,620 (-)NCBICelera
Cytogenetic Map4C4NCBI
cM Map442.05NCBI
Mir31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85108,714,849 - 108,714,954 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.25103,599,038 - 103,599,143 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx5106,031,567 - 106,031,672 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05107,761,170 - 107,761,275 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05107,834,100 - 107,834,205 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd5108,596,212 - 108,596,317 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive5110,442,563 - 110,442,668 (-)NCBILyon_Normotensive
Lyon_Hypertensive5109,617,889 - 109,617,994 (-)NCBILyon_Hypertensive
F344_StmMcwi5103,318,805 - 103,318,910 (-)NCBIF344_StmMcwi
Rnor_6.05107,206,515 - 107,206,620 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05111,183,081 - 111,183,186 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera5102,327,983 - 102,328,088 (-)NCBICelera
Cytogenetic Map5q32NCBI
MIR31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,198,732 - 201,198,809 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11201,198,732 - 201,198,809 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,397,161 - 224,397,238 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression

endoderm
respiratory system
1 1

Sequence


Ensembl Acc Id: ENSCAFT00000040001
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1140,904,437 - 40,904,503 (-)Ensembl
RefSeq Acc Id: NR_049225
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11140,904,438 - 40,904,496 (-)NCBI
Dog10K_Boxer_Tasha1139,576,885 - 39,576,943 (-)NCBI
ROS_Cfam_1.01141,846,612 - 41,846,670 (-)NCBI
UMICH_Zoey_3.11140,518,076 - 40,518,134 (-)NCBI
UNSW_CanFamBas_1.01140,405,265 - 40,405,323 (-)NCBI
UU_Cfam_GSD_1.01141,018,979 - 41,019,037 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025718 Ensembl
  ENSCAFG00845016223 ENTREZGENE
Ensembl Transcript ENSCAFT00845028839 ENTREZGENE
miRBase MI0007994 ENTREZGENE
NCBI Gene MIR31 ENTREZGENE
RNAcentral URS000075A941 RNACentral
  URS00007E37C8 RNACentral
  URS00007E4AE8 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR31  microRNA mir-31    microRNA 31  Symbol and/or name change 5135510 APPROVED