PAX2 (paired box 2) - Rat Genome Database

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Gene: PAX2 (paired box 2) Canis lupus familiaris
Analyze
Symbol: PAX2
Name: paired box 2
RGD ID: 12111142
Description: ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); INVOLVED IN brain morphogenesis (ortholog); branching involved in ureteric bud morphogenesis (ortholog); camera-type eye development (ortholog); ASSOCIATED WITH CAKUT (ortholog); CAKUT1 (ortholog); chronic kidney disease (ortholog); FOUND IN protein-containing complex (ortholog); protein-DNA complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: paired box gene 2; paired box protein Pax-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12813,442,894 - 13,519,853 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2813,442,893 - 13,532,094 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2813,606,001 - 13,692,205 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02813,904,432 - 13,990,703 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2813,900,260 - 13,992,558 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12813,450,612 - 13,536,833 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02813,492,258 - 13,578,015 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02813,623,521 - 13,709,771 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ development  (IEA)
brain morphogenesis  (ISO)
branching involved in ureteric bud morphogenesis  (IEA,ISO)
camera-type eye development  (ISO)
cell fate determination  (ISO)
cellular response to epidermal growth factor stimulus  (ISO)
cellular response to glucose stimulus  (ISO)
cellular response to mechanical stimulus  (ISO)
cellular response to retinoic acid  (ISO)
central nervous system development  (ISO)
cochlea development  (ISO)
cochlea morphogenesis  (ISO)
DNA-templated transcription  (IEA)
glial cell differentiation  (ISO)
inner ear morphogenesis  (ISO)
kidney development  (ISO)
mesenchymal to epithelial transition  (ISO)
mesenchymal to epithelial transition involved in metanephros morphogenesis  (ISO)
mesodermal cell fate specification  (ISO)
mesonephric duct development  (ISO)
mesonephric tubule development  (ISO)
mesonephric tubule formation  (ISO)
mesonephros development  (ISO)
metanephric collecting duct development  (ISO)
metanephric distal convoluted tubule development  (ISO)
metanephric epithelium development  (IEA)
metanephric mesenchymal cell differentiation  (ISO)
metanephric mesenchyme development  (ISO)
metanephric nephron tubule formation  (ISO)
metanephros development  (ISO)
negative regulation of apoptotic process  (IEA)
negative regulation of apoptotic process involved in metanephric collecting duct development  (ISO)
negative regulation of apoptotic process involved in metanephric nephron tubule development  (ISO)
negative regulation of DNA-templated transcription  (IEA)
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis  (ISO)
negative regulation of mesenchymal cell apoptotic process involved in metanephros development  (ISO)
negative regulation of programmed cell death  (ISO)
negative regulation of reactive oxygen species metabolic process  (IEA)
negative regulation of transcription by RNA polymerase II  (ISO)
nephric duct formation  (ISO)
nervous system development  (IBA)
neural tube closure  (ISO)
optic chiasma development  (ISO)
optic cup morphogenesis involved in camera-type eye development  (ISO)
optic nerve development  (ISO)
optic nerve morphogenesis  (ISO)
optic nerve structural organization  (ISO)
pancreas development  (ISO)
paramesonephric duct development  (ISO)
positive regulation of branching involved in ureteric bud morphogenesis  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of DNA-templated transcription  (IEA)
positive regulation of epithelial cell proliferation  (IEA)
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  (ISO)
positive regulation of metanephric DCT cell differentiation  (ISO)
positive regulation of metanephric glomerulus development  (ISO)
positive regulation of optic nerve formation  (ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
pronephric field specification  (ISO)
pronephros development  (ISO)
regulation of apoptotic process  (ISO)
regulation of DNA-templated transcription  (IEA)
regulation of metanephric nephron tubule epithelial cell differentiation  (ISO)
regulation of metanephros size  (IEA)
regulation of programmed cell death  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
response to nutrient levels  (ISO)
retinal pigment epithelium development  (ISO)
sensory organ development  (IBA)
stem cell differentiation  (ISO)
system development  (IEA)
ureter development  (ISO)
ureter maturation  (ISO)
ureter morphogenesis  (ISO)
ureteric bud development  (ISO)
urogenital system development  (ISO)
vestibulocochlear nerve formation  (ISO)

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PAX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12813,442,894 - 13,519,853 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2813,442,893 - 13,532,094 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2813,606,001 - 13,692,205 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02813,904,432 - 13,990,703 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2813,900,260 - 13,992,558 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12813,450,612 - 13,536,833 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02813,492,258 - 13,578,015 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02813,623,521 - 13,709,771 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
PAX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810100,735,396 - 100,829,944 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10100,735,396 - 100,829,944 (+)Ensemblhg38GRCh38
GRCh3710102,495,153 - 102,589,701 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610102,495,458 - 102,579,688 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3410102,495,321 - 102,579,687NCBI
Celera1096,243,249 - 96,327,456 (+)NCBICelera
Cytogenetic Map10q24.31NCBI
HuRef1096,133,870 - 96,218,089 (+)NCBIHuRef
CHM1_110102,789,756 - 102,873,990 (+)NCBICHM1_1
T2T-CHM13v2.010101,618,753 - 101,713,301 (+)NCBIT2T-CHM13v2.0
Pax2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391944,735,040 - 44,826,708 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1944,735,057 - 44,826,310 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381944,746,601 - 44,838,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1944,756,045 - 44,837,871 (+)Ensemblmm10GRCm38
MGSCv371944,831,884 - 44,910,517 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361944,810,705 - 44,889,338 (+)NCBIMGSCv36mm8
Celera1945,528,146 - 45,605,640 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.09NCBI
Pax2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81253,555,447 - 253,646,623 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1253,555,418 - 253,645,438 (+)EnsemblGRCr8
mRatBN7.21243,616,509 - 243,697,454 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,616,606 - 243,695,321 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1251,764,024 - 251,843,009 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01258,462,042 - 258,540,874 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01251,113,975 - 251,192,959 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1252,910,169 - 252,988,972 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1257,828,932 - 257,907,736 (+)NCBILyon_Normotensive
Lyon_Hypertensive1254,594,122 - 254,672,926 (+)NCBILyon_Hypertensive
F344_StmMcwi1251,156,458 - 251,235,265 (+)NCBIF344_StmMcwi
Rnor_6.01264,493,579 - 264,585,073 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1264,504,591 - 264,583,329 (+)Ensemblrn6Rnor6.0
Rnor_5.01271,936,269 - 272,027,514 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41249,804,055 - 249,895,306 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1239,428,164 - 239,506,765 (+)NCBICelera
RGSC_v3.11250,026,899 - 250,155,758 (+)NCBI
Cytogenetic Map1q54NCBI
Pax2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554859,350,087 - 9,430,607 (-)Ensembl
ChiLan1.0NW_0049554859,351,913 - 9,430,607 (-)NCBIChiLan1.0ChiLan1.0
PAX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,618,587 - 112,713,001 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,623,907 - 112,718,321 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01097,344,978 - 97,429,086 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110100,822,676 - 100,904,065 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10100,822,676 - 100,904,028 (+)EnsemblpanPan2panpan1.1
Pax2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721333,215,941 - 33,325,282 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366004,850,552 - 4,928,214 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366004,850,594 - 4,939,010 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14111,823,308 - 111,913,969 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114111,822,334 - 111,914,950 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214121,481,577 - 121,574,679 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1993,763,975 - 93,847,180 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604854,813,496 - 54,880,591 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pax2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624831375,866 - 453,930 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624831375,851 - 453,968 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pax2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1244,263,882 - 44,342,438 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in PAX2
728 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
1 9 10 3 2 6 2 12 9 6 12 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005637622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005637623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014109102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014109103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014109104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014109105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038440308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000003701   ⟹   ENSCAFP00000003425
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2813,446,339 - 13,532,094 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000015418   ⟹   ENSCAFP00000014267
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2813,442,893 - 13,520,017 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000072822   ⟹   ENSCAFP00000057653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2813,446,339 - 13,532,094 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032648   ⟹   ENSCAFP00845025534
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2813,900,260 - 13,992,558 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032729   ⟹   ENSCAFP00845025604
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2813,903,555 - 13,992,558 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032839   ⟹   ENSCAFP00845025703
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2813,903,555 - 13,992,558 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032910   ⟹   ENSCAFP00845025751
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2813,905,107 - 13,992,558 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845033005   ⟹   ENSCAFP00845025828
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2813,909,833 - 13,992,558 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845033129   ⟹   ENSCAFP00845025934
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2813,911,036 - 13,990,023 (+)Ensembl
RefSeq Acc Id: XM_038440302   ⟹   XP_038296230
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02813,904,432 - 13,990,703 (+)NCBI
RefSeq Acc Id: XM_038440303   ⟹   XP_038296231
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02813,904,432 - 13,990,702 (+)NCBI
RefSeq Acc Id: XM_038440304   ⟹   XP_038296232
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02813,904,433 - 13,990,679 (+)NCBI
RefSeq Acc Id: XM_038440305   ⟹   XP_038296233
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02813,904,433 - 13,990,679 (+)NCBI
RefSeq Acc Id: XM_038440306   ⟹   XP_038296234
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02813,904,435 - 13,990,699 (+)NCBI
RefSeq Acc Id: XM_038440307   ⟹   XP_038296235
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02813,904,436 - 13,990,677 (+)NCBI
RefSeq Acc Id: XM_038440308   ⟹   XP_038296236
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02813,904,436 - 13,990,677 (+)NCBI
RefSeq Acc Id: XM_038460484   ⟹   XP_038316412
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2813,606,001 - 13,692,205 (+)NCBI
RefSeq Acc Id: XM_038460486   ⟹   XP_038316414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2813,606,001 - 13,692,204 (+)NCBI
RefSeq Acc Id: XM_038460487   ⟹   XP_038316415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2813,606,002 - 13,692,181 (+)NCBI
RefSeq Acc Id: XM_038460488   ⟹   XP_038316416
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2813,606,002 - 13,692,181 (+)NCBI
RefSeq Acc Id: XM_038460489   ⟹   XP_038316417
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2813,606,004 - 13,692,201 (+)NCBI
RefSeq Acc Id: XM_038460490   ⟹   XP_038316418
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2813,606,005 - 13,692,179 (+)NCBI
RefSeq Acc Id: XM_038460491   ⟹   XP_038316419
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2813,606,005 - 13,692,179 (+)NCBI
RefSeq Acc Id: XM_038514920   ⟹   XP_038370848
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12813,450,612 - 13,536,833 (+)NCBI
RefSeq Acc Id: XM_038514921   ⟹   XP_038370849
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12813,450,612 - 13,536,832 (+)NCBI
RefSeq Acc Id: XM_038514922   ⟹   XP_038370850
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12813,450,613 - 13,536,809 (+)NCBI
RefSeq Acc Id: XM_038514923   ⟹   XP_038370851
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12813,450,613 - 13,536,809 (+)NCBI
RefSeq Acc Id: XM_038514924   ⟹   XP_038370852
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12813,450,615 - 13,536,829 (+)NCBI
RefSeq Acc Id: XM_038514925   ⟹   XP_038370853
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12813,450,616 - 13,536,807 (+)NCBI
RefSeq Acc Id: XM_038514926   ⟹   XP_038370854
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12813,450,616 - 13,536,807 (+)NCBI
RefSeq Acc Id: XM_038578534   ⟹   XP_038434462
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02813,623,521 - 13,709,771 (+)NCBI
RefSeq Acc Id: XM_038578535   ⟹   XP_038434463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02813,623,521 - 13,709,770 (+)NCBI
RefSeq Acc Id: XM_038578536   ⟹   XP_038434464
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02813,623,522 - 13,709,747 (+)NCBI
RefSeq Acc Id: XM_038578537   ⟹   XP_038434465
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02813,623,522 - 13,709,747 (+)NCBI
RefSeq Acc Id: XM_038578538   ⟹   XP_038434466
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02813,623,524 - 13,709,767 (+)NCBI
RefSeq Acc Id: XM_038578539   ⟹   XP_038434467
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02813,623,525 - 13,709,745 (+)NCBI
RefSeq Acc Id: XM_038578540   ⟹   XP_038434468
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02813,623,525 - 13,709,745 (+)NCBI
RefSeq Acc Id: XM_038642715   ⟹   XP_038498643
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02813,492,258 - 13,578,015 (+)NCBI
RefSeq Acc Id: XM_038642716   ⟹   XP_038498644
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02813,492,259 - 13,578,015 (+)NCBI
RefSeq Acc Id: XM_038642717   ⟹   XP_038498645
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02813,492,260 - 13,577,991 (+)NCBI
RefSeq Acc Id: XM_038642718   ⟹   XP_038498646
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02813,492,260 - 13,577,991 (+)NCBI
RefSeq Acc Id: XM_038642719   ⟹   XP_038498647
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02813,492,261 - 13,578,011 (+)NCBI
RefSeq Acc Id: XM_038642720   ⟹   XP_038498648
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02813,492,263 - 13,577,990 (+)NCBI
RefSeq Acc Id: XM_038642721   ⟹   XP_038498649
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02813,492,263 - 13,577,989 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038296230 (Get FASTA)   NCBI Sequence Viewer  
  XP_038296231 (Get FASTA)   NCBI Sequence Viewer  
  XP_038296232 (Get FASTA)   NCBI Sequence Viewer  
  XP_038296233 (Get FASTA)   NCBI Sequence Viewer  
  XP_038296234 (Get FASTA)   NCBI Sequence Viewer  
  XP_038296235 (Get FASTA)   NCBI Sequence Viewer  
  XP_038296236 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316412 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316414 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316415 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316416 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316417 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316418 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316419 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370848 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370849 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370850 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370851 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370852 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370853 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370854 (Get FASTA)   NCBI Sequence Viewer  
  XP_038434462 (Get FASTA)   NCBI Sequence Viewer  
  XP_038434463 (Get FASTA)   NCBI Sequence Viewer  
  XP_038434464 (Get FASTA)   NCBI Sequence Viewer  
  XP_038434465 (Get FASTA)   NCBI Sequence Viewer  
  XP_038434466 (Get FASTA)   NCBI Sequence Viewer  
  XP_038434467 (Get FASTA)   NCBI Sequence Viewer  
  XP_038434468 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498643 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498644 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498645 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498646 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498647 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498648 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498649 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000003425.5
  ENSCAFP00000014267.5
  ENSCAFP00000057653.2
  ENSCAFP00000072373.1
  ENSCAFP00000073207.1
  ENSCAFP00000074385.1
  ENSCAFP00000075063.1
  ENSCAFP00040032829.1
  ENSCAFP00845025534.1
  ENSCAFP00845025604.1
  ENSCAFP00845025703
  ENSCAFP00845025703.1
  ENSCAFP00845025751
  ENSCAFP00845025751.1
  ENSCAFP00845025828.1
  ENSCAFP00845025934
  ENSCAFP00845025934.1
Ensembl Acc Id: ENSCAFP00000014267   ⟸   ENSCAFT00000015418
Ensembl Acc Id: ENSCAFP00000003425   ⟸   ENSCAFT00000003701
Ensembl Acc Id: ENSCAFP00000057653   ⟸   ENSCAFT00000072822
RefSeq Acc Id: XP_038370848   ⟸   XM_038514920
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038370849   ⟸   XM_038514921
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038370850   ⟸   XM_038514922
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038370851   ⟸   XM_038514923
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038370852   ⟸   XM_038514924
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038370853   ⟸   XM_038514925
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038370854   ⟸   XM_038514926
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038498643   ⟸   XM_038642715
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038498644   ⟸   XM_038642716
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038498645   ⟸   XM_038642717
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038498646   ⟸   XM_038642718
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038498647   ⟸   XM_038642719
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038498648   ⟸   XM_038642720
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038498649   ⟸   XM_038642721
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038296230   ⟸   XM_038440302
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038296231   ⟸   XM_038440303
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038296232   ⟸   XM_038440304
- Peptide Label: isoform X3
- UniProtKB: A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038296233   ⟸   XM_038440305
- Peptide Label: isoform X4
- UniProtKB: A0A8I3P6Q5 (UniProtKB/TrEMBL),   A0A8P0TQY6 (UniProtKB/TrEMBL),   A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038296234   ⟸   XM_038440306
- Peptide Label: isoform X5
- UniProtKB: A0A8C0K672 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038296235   ⟸   XM_038440307
- Peptide Label: isoform X6
- UniProtKB: A0A8C0K672 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038296236   ⟸   XM_038440308
- Peptide Label: isoform X7
- UniProtKB: A0A8C0K672 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316412   ⟸   XM_038460484
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316414   ⟸   XM_038460486
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316415   ⟸   XM_038460487
- Peptide Label: isoform X3
- UniProtKB: A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316416   ⟸   XM_038460488
- Peptide Label: isoform X4
- UniProtKB: A0A8I3P6Q5 (UniProtKB/TrEMBL),   A0A8P0TQY6 (UniProtKB/TrEMBL),   A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316417   ⟸   XM_038460489
- Peptide Label: isoform X5
- UniProtKB: A0A8C0K672 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316418   ⟸   XM_038460490
- Peptide Label: isoform X6
- UniProtKB: A0A8C0K672 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316419   ⟸   XM_038460491
- Peptide Label: isoform X7
- UniProtKB: A0A8C0K672 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434462   ⟸   XM_038578534
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434463   ⟸   XM_038578535
- Peptide Label: isoform X2
- UniProtKB: A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434464   ⟸   XM_038578536
- Peptide Label: isoform X3
- UniProtKB: A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434465   ⟸   XM_038578537
- Peptide Label: isoform X4
- UniProtKB: A0A8I3P6Q5 (UniProtKB/TrEMBL),   A0A8I3PC72 (UniProtKB/TrEMBL),   A0A8P0P6V7 (UniProtKB/TrEMBL),   A0A8P0TQY6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434466   ⟸   XM_038578538
- Peptide Label: isoform X5
- UniProtKB: A0A8C0K672 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434467   ⟸   XM_038578539
- Peptide Label: isoform X6
- UniProtKB: A0A8C0K672 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038434468   ⟸   XM_038578540
- Peptide Label: isoform X7
- UniProtKB: A0A8C0K672 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845025828   ⟸   ENSCAFT00845033005
Ensembl Acc Id: ENSCAFP00845025703   ⟸   ENSCAFT00845032839
Ensembl Acc Id: ENSCAFP00845025604   ⟸   ENSCAFT00845032729
Ensembl Acc Id: ENSCAFP00845025934   ⟸   ENSCAFT00845033129
Ensembl Acc Id: ENSCAFP00845025534   ⟸   ENSCAFT00845032648
Ensembl Acc Id: ENSCAFP00845025751   ⟸   ENSCAFT00845032910
Protein Domains
Paired


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009709 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040020200 UniProtKB/TrEMBL
  ENSCAFG00845018449 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000003701.6 UniProtKB/TrEMBL
  ENSCAFT00000015418.5 UniProtKB/TrEMBL
  ENSCAFT00000072822.2 UniProtKB/TrEMBL
  ENSCAFT00000099221.1 UniProtKB/TrEMBL
  ENSCAFT00000105884.1 UniProtKB/TrEMBL
  ENSCAFT00000107764.1 UniProtKB/TrEMBL
  ENSCAFT00000110186.1 UniProtKB/TrEMBL
  ENSCAFT00040037667.1 UniProtKB/TrEMBL
  ENSCAFT00845032648.1 UniProtKB/TrEMBL
  ENSCAFT00845032729.1 UniProtKB/TrEMBL
  ENSCAFT00845032839 ENTREZGENE
  ENSCAFT00845032839.1 UniProtKB/TrEMBL
  ENSCAFT00845032910 ENTREZGENE
  ENSCAFT00845032910.1 UniProtKB/TrEMBL
  ENSCAFT00845033005.1 UniProtKB/TrEMBL
  ENSCAFT00845033129 ENTREZGENE
  ENSCAFT00845033129.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  PAIRED_DNA-bd_dom UniProtKB/TrEMBL
  Paired_dom UniProtKB/TrEMBL
  Pax2_C UniProtKB/TrEMBL
  PAX_fam UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene PAX2 ENTREZGENE
PANTHER PAIRED BOX PROTEIN PAX-2 UniProtKB/TrEMBL
  PTHR45636 UniProtKB/TrEMBL
Pfam PAX UniProtKB/TrEMBL
  Pax2_C UniProtKB/TrEMBL
PRINTS PAIREDBOX UniProtKB/TrEMBL
PROSITE PAIRED_1 UniProtKB/TrEMBL
  PAIRED_2 UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
SMART PAX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C0K672 ENTREZGENE
  A0A8C0T8T8_CANLF UniProtKB/TrEMBL
  A0A8I3P4L0_CANLF UniProtKB/TrEMBL
  A0A8I3P674_CANLF UniProtKB/TrEMBL
  A0A8I3P6L2_CANLF UniProtKB/TrEMBL
  A0A8I3P6Q5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P6Q9_CANLF UniProtKB/TrEMBL
  A0A8I3PC72 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P6V7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PPP2_CANLF UniProtKB/TrEMBL
  A0A8P0S8F2_CANLF UniProtKB/TrEMBL
  A0A8P0TQY6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TTL7_CANLF UniProtKB/TrEMBL
  A0A8P0TTY3_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:44276 ENTREZGENE