SLC17A6 (solute carrier family 17 member 6) - Rat Genome Database

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Pathways
Gene: SLC17A6 (solute carrier family 17 member 6) Pan paniscus
Analyze
Symbol: SLC17A6
Name: solute carrier family 17 member 6
RGD ID: 11681799
Description: ENCODES a protein that exhibits potassium:proton antiporter activity (ortholog); sodium:phosphate symporter activity (ortholog); INVOLVED IN hippocampus development (ortholog); hyaloid vascular plexus regression (ortholog); neural retina development (ortholog); ASSOCIATED WITH learning disability (ortholog); Memory Disorders (ortholog); transient cerebral ischemia (ortholog); FOUND IN early endosome (ortholog); excitatory synapse (ortholog); pericellular basket (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6; vesicular glutamate transporter 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2924,627,830 - 24,669,284 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11124,591,980 - 24,633,414 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,350,537 - 22,392,009 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11122,257,983 - 22,299,443 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1122,258,011 - 22,301,944 (+)EnsemblpanPan2panpan1.1
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC17A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2924,627,830 - 24,669,284 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11124,591,980 - 24,633,414 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,350,537 - 22,392,009 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11122,257,983 - 22,299,443 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1122,258,011 - 22,301,944 (+)EnsemblpanPan2panpan1.1
SLC17A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381122,338,381 - 22,379,503 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1122,338,381 - 22,379,503 (+)Ensemblhg38GRCh38
GRCh371122,359,927 - 22,401,049 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361122,316,243 - 22,357,619 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341122,316,242 - 22,357,619NCBI
Celera1122,492,722 - 22,534,075 (+)NCBICelera
Cytogenetic Map11p14.3NCBI
HuRef1122,042,899 - 22,084,263 (+)NCBIHuRef
CHM1_11122,359,385 - 22,400,763 (+)NCBICHM1_1
T2T-CHM13v2.01122,458,971 - 22,500,075 (+)NCBIT2T-CHM13v2.0
Slc17a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39751,271,578 - 51,320,874 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl751,271,754 - 51,320,867 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38751,621,830 - 51,671,126 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl751,622,006 - 51,671,119 (+)Ensemblmm10GRCm38
MGSCv37758,877,200 - 58,926,496 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36751,490,086 - 51,539,138 (+)NCBIMGSCv36mm8
Celera749,002,489 - 49,051,776 (+)NCBICelera
Cytogenetic Map7B4NCBI
cM Map732.78NCBI
Slc17a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81110,348,447 - 110,388,499 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1110,348,447 - 110,388,498 (+)EnsemblGRCr8
mRatBN7.21101,212,489 - 101,252,543 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1101,212,489 - 101,252,542 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1106,619,563 - 106,659,620 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01115,091,464 - 115,131,521 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01108,395,898 - 108,436,013 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1108,982,675 - 109,029,080 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1114,081,027 - 114,121,138 (+)NCBILyon_Normotensive
Lyon_Hypertensive1110,625,957 - 110,672,364 (+)NCBILyon_Hypertensive
F344_StmMcwi1109,082,272 - 109,122,320 (+)NCBIF344_StmMcwi
Rnor_6.01106,980,463 - 107,038,717 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1106,998,623 - 107,038,704 (+)Ensemblrn6Rnor6.0
Rnor_5.01108,040,511 - 108,080,524 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41101,425,975 - 101,466,023 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera195,386,910 - 95,426,949 (+)NCBICelera
RGSC_v3.11101,504,085 - 101,544,133 (+)NCBI
Cytogenetic Map1q22NCBI
Slc17a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554762,813,368 - 2,854,514 (+)Ensembl
ChiLan1.0NW_0049554762,813,368 - 2,854,371 (+)NCBIChiLan1.0ChiLan1.0
SLC17A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12144,015,161 - 44,056,286 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2144,016,133 - 44,054,931 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2143,491,537 - 43,529,754 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02145,131,589 - 45,172,308 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2145,132,360 - 45,172,255 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12144,132,863 - 44,170,882 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02144,305,349 - 44,343,374 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02144,698,060 - 44,736,170 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc17a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494740,843,801 - 40,886,442 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366543,040,312 - 3,083,669 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366543,039,825 - 3,082,788 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC17A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl237,098,992 - 37,138,475 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1237,098,983 - 37,138,935 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2240,309,860 - 40,349,435 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC17A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,634,754 - 42,677,309 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,636,512 - 42,677,165 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038139,944,822 - 139,988,881 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc17a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476613,335,130 - 13,376,712 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476613,335,186 - 13,376,634 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc17a6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12148,967,958 - 149,007,749 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003830451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000035811   ⟹   ENSPPAP00000013142
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1122,258,011 - 22,301,944 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000035814   ⟹   ENSPPAP00000013145
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1122,258,573 - 22,301,944 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000035818   ⟹   ENSPPAP00000013149
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1122,258,573 - 22,279,654 (+)Ensembl
RefSeq Acc Id: XM_003830451   ⟹   XP_003830499
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2924,627,830 - 24,669,284 (+)NCBI
NHGRI_mPanPan11124,591,980 - 24,633,414 (+)NCBI
Mhudiblu_PPA_v01122,350,537 - 22,392,009 (+)NCBI
PanPan1.11122,257,983 - 22,299,443 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003830499 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000013142.1
  ENSPPAP00000013145.1
  ENSPPAP00000013149.1
  ENSPPAP00050032411
RefSeq Acc Id: XP_003830499   ⟸   XM_003830451
- UniProtKB: A0A2R9ACE7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000013149   ⟸   ENSPPAT00000035818
Ensembl Acc Id: ENSPPAP00000013145   ⟸   ENSPPAT00000035814
Ensembl Acc Id: ENSPPAP00000013142   ⟸   ENSPPAT00000035811

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029737 Ensembl, UniProtKB/TrEMBL
  ENSPPAG00050023578 ENTREZGENE
Ensembl Transcript ENSPPAT00000035811.1 UniProtKB/TrEMBL
  ENSPPAT00000035814.1 UniProtKB/TrEMBL
  ENSPPAT00000035818.1 UniProtKB/TrEMBL
  ENSPPAT00050050090 ENTREZGENE
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_Na/Anion_cotransporter UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report pps:100993099 UniProtKB/TrEMBL
NCBI Gene SLC17A6 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 17 UniProtKB/TrEMBL
  VESICULAR GLUTAMATE TRANSPORTER 2 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A2R9A772_PANPA UniProtKB/TrEMBL
  A0A2R9A8B7_PANPA UniProtKB/TrEMBL
  A0A2R9ACE7 ENTREZGENE, UniProtKB/TrEMBL