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Strain Registration

Strain: SS.LEW-(D16Mit2-D16Chm23)/Ayd

Symbol: SS.LEW-(D16Mit2-D16Chm23)/Ayd
Strain: SS.LEW-(D16Mit2-D16Chm23)
Substrain: Ayd
RGD ID: 1358168
Citation ID: RRID:RGD_1358168
Ontology ID: RS:0000857
Also Known As: SS.LEW-(D16Mit2-D16Chm23)/Ayd; C16S.L2; S.LEW-(D16Mit2-D16Chm23)/Lt
Type: congenic
Available Source: Not Available
Origination: Research Centre, Centre Hospitalier de l'Universite de Monteal (CHUM), Quebec, Canada
Description: This congenic strain originated from a SS/Jr parental strain.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21688,524 - 4,227,730RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.016756,352 - 5,098,704RGD_MAPPER_PIPELINERnor6.0
Rnor_5.016751,266 - 5,038,806RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41642,656 - 4,304,517RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D16Mit2-D16Chm23)/AydRatSS.LEW-(D16Mit2-D16Chm23)/Ayd  IEA 7241799 RGD 

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D16Mit2-D16Chm23)/AydRatarterial blood pressure trait  EXP 70460 RGD 
SS.LEW-(D16Mit2-D16Chm23)/AydRatarterial blood pressure trait  EXP 1300037 RGD 

Phenotype Values via Phenominer Click to see Annotation Detail View

Related Phenotype Data for Term "SS.LEW-(D16Mit2-D16Chm23)/Ayd" (RS:0000857)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure

References

References - curated
# Reference Title Reference Citation
1. Combining congenic coverage with gene profiling in search of candidates for blood pressure quantitative trait loci in Dahl rats. Moujahidine M, etal., Hypertens Res 2004 Mar;27(3):203-12.
2. Congenic mapping of a blood pressure QTL on Chromosome 16 of Dahl rats. Moujahidine M, etal., Mamm Genome 2002 Mar;13(3):153-6.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D16Mit2)
Rat AssemblyChrPosition (strand)Source
GRCr8164,234,212 - 4,234,333 (+)Marker Load Pipeline
mRatBN7.2164,227,609 - 4,227,730 (+)MAPPER
Rnor_6.0165,098,584 - 5,098,704NCBI
Rnor_6.0165,013,802 - 5,013,922NCBI
Rnor_5.0165,038,686 - 5,038,806UniSTS
Rnor_5.0164,954,192 - 4,954,312UniSTS
RGSC_v3.4164,304,396 - 4,304,517RGD
RGSC_v3.4164,304,397 - 4,304,517UniSTS
RGSC_v3.1164,304,394 - 4,304,515RGD
Celera1610,945,533 - 10,945,653UniSTS
RH 3.4 Map168.3UniSTS
RH 3.4 Map168.3RGD
SHRSP x BN Map161.1599RGD
SHRSP x BN Map161.1599UniSTS
FHH x ACI Map163.1999RGD
Cytogenetic Map16p16UniSTS

Flank 2 / 1 (D16Chm23)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21688,524 - 88,716 (+)MAPPER
Rnor_6.016756,352 - 756,541NCBI
Rnor_5.016751,266 - 751,455UniSTS
RGSC_v3.41642,656 - 42,845UniSTS
Celera1675,251 - 75,440UniSTS
Cytogenetic Map16p16UniSTS
Strain QTL Data
Symbol Name Trait
Bp248 Blood pressure QTL 248 arterial blood pressure trait   (VT:2000000)    
Bp75 Blood pressure QTL 75 arterial blood pressure trait   (VT:2000000)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_phys_biochem Congenic strain has lower blood pressure versus the parental SS/Jr strain. 1300037