D16Chm23 Marker Search Result - Rat Genome Database

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Marker: D16Chm23

Symbol: D16Chm23
Previously known as:
RGD ID: 1358036
Expected Size: 190 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21688,524 - 88,716 (+)MAPPERmRatBN7.2
Rnor_6.016756,352 - 756,541NCBIRnor6.0
Rnor_5.016751,266 - 751,455UniSTSRnor5.0
RGSC_v3.41642,656 - 42,845UniSTSRGSC3.4
Celera1675,251 - 75,440UniSTS
Cytogenetic Map16p16UniSTS
Is Marker For: Strains:   SS.LEW-(D16Mit2-D16Chm23)/Ayd   SS.LEW-(D16Rat12-D16Chm23)/Ayd  
Genes:   Rps24   Polr3a  


Annotation


References - curated
# Reference Title Reference Citation
1. Combining congenic coverage with gene profiling in search of candidates for blood pressure quantitative trait loci in Dahl rats. Moujahidine M, etal., Hypertens Res 2004 Mar;27(3):203-12.
2. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CACACAAGCCTCCGGTCTA
Reverse Primer TGAGAATATGGAGGCAGAGG
 

Region

Nucleotide Sequences
GenBank Nucleotide JH618582.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631524Bp75Blood pressure QTL 750.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)161110831Rat
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 361102 UniSTS
  81776 UniSTS
UniSTS 517879 UniSTS