rs4775090 Rat Genome Database

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Variant: rs4775090 -  Homo sapiens

RGD ID: 406338795
RS ID: rs4775090
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: ADAM10  
Reference Nucleotide: G
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh38 15 58,720,123
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
rs4775090Humanblood cholesterol level  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538
rs4775090Humanblood high density lipoprotein cholesterol level  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Data has come from the GWAS Catalog   
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1757294_H GCST90093002 Average diameter for VLDL particles 115,082 European ancestry individuals G 0.950527 3E-8 7.523 rs4775090 0.0501013 VLDL particle size (OBA:2050114)
 PMID:35213538
GWAS1359795_H GCST90093008 Free cholesterol levels in very large HDL 115,082 European ancestry individuals G 0.950527 5E-12 11.302 rs4775090 0.0620831 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1760068_H GCST90092869 Cholesterol to total lipids ratio in large VLDL 115,071 European ancestry individuals G 0.950535 2E-8 7.699 rs4775090 0.0532702 cholesterol:total lipids ratio (EFO:0020943)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1778454_H GCST90092871 Cholesteryl esters to total lipids ratio in large VLDL 115,071 European ancestry individuals G 0.950535 8E-9 8.097 rs4775090 0.053245 cholesteryl esters:total lipids ratio (EFO:0020944)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1778635_H GCST90092879 Triglycerides to total lipids ratio in large VLDL 115,071 European ancestry individuals G 0.950535 2E-9 8.699 rs4775090 0.0572773 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538

Gene Symbol:ADAM10
Accession:NM_001110
Location:INTRON

Gene Symbol:ADAM10
Accession:NM_001320570
Location:INTRON

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Database
Acc Id
Source(s)
GWAS Catalog GCST90092869 GWAS Catalog
  GCST90092871 GWAS Catalog
  GCST90092879 GWAS Catalog
  GCST90093002 GWAS Catalog
  GCST90093008 GWAS Catalog