rs116853455 Rat Genome Database

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Variant: rs116853455 -  Homo sapiens

RGD ID: 155840463
RS ID: rs116853455
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LARS2  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh38 3 45,466,384
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
rs116853455Humanvaginal microbiome measurement  IAGP 405850206 GWAS_CATALOGPMID:34282934
Data has come from the GWAS Catalog   
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1402536_H GCST90026705 Vaginal microbiome MetaCyc pathway (1CMET2-PWY|N10-formyl-tetrahydrofolate biosynthesis) 315 Chinese ancestry individuals A NR 9E-7 6.046 rs116853455 1.732 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1404964_H GCST90026843 Vaginal microbiome MetaCyc pathway (PWY-5910|superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate)) 315 Chinese ancestry individuals A NR 0.000001 6 rs116853455 1.757 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1407519_H GCST90026938 Vaginal microbiome MetaCyc pathway (PWY-922|mevalonate pathway I) 315 Chinese ancestry individuals A NR 0.000008 5.097 rs116853455 1.612 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1408103_H GCST90026764 Vaginal microbiome MetaCyc pathway (P161-PWY|acetylene degradation) 315 Chinese ancestry individuals A NR 0.000004 5.398 rs116853455 1.678 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934

Gene Symbol:LARS2
Accession:XM_017006042
Location:INTRON

Gene Symbol:LARS2
Accession:NM_001368263
Location:INTRON

Gene Symbol:LARS2
Accession:XM_011533554
Location:INTRON

Gene Symbol:LARS2
Accession:XM_047447830
Location:INTRON

Gene Symbol:LARS2
Accession:NM_015340
Location:INTRON

Gene Symbol:LARS2
Accession:XM_047447829
Location:INTRON

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Database
Acc Id
Source(s)
GWAS Catalog GCST90026764 GWAS Catalog