GWAS1407519_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1407519_H (vaginal microbiome measurement QTL GWAS1407519 (human)) Homo sapiens

Symbol: GWAS1407519_H
Name: vaginal microbiome measurement QTL GWAS1407519 (human)
RGD ID: 597311445
Trait: vaginal microbiome measurement
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38345,466,384 - 45,466,385RGD_MAPPER_PIPELINEGRCh38
GRCh37345,507,876 - 45,507,877RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1407519_HHumanvaginal microbiome measurement  IAGPrs116853455405850206 GWAS_CATALOGPMID:34282934

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1318191LARS2leucyl-tRNA synthetase 2, mitochondrial34538857645549407Human


Peak: (rs116853455)
Human AssemblyChrPosition (strand)Source
GRCh38345,466,384 - 45,466,385RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597308890GWAS1404964_Hvaginal microbiome measurement QTL GWAS1404964 (human)0.000001vaginal microbiome measurement34546638445466385Human
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
597306462GWAS1402536_Hvaginal microbiome measurement QTL GWAS1402536 (human)0.0000009vaginal microbiome measurement34546638445466385Human
597312029GWAS1408103_Hvaginal microbiome measurement QTL GWAS1408103 (human)0.000004vaginal microbiome measurement34546638445466385Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
2316061GLUCO194_HGlucose level QTL 194 (human)0.02Glucose level32338077449380774Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human
597311445GWAS1407519_Hvaginal microbiome measurement QTL GWAS1407519 (human)0.000008vaginal microbiome measurement34546638445466385Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1407519_H GCST90026938 Vaginal microbiome MetaCyc pathway (PWY-922|mevalonate pathway I) 315 Chinese ancestry individuals A NR 0.000008 5.097 rs116853455 1.612 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1402536_H GCST90026705 Vaginal microbiome MetaCyc pathway (1CMET2-PWY|N10-formyl-tetrahydrofolate biosynthesis) 315 Chinese ancestry individuals A NR 9E-7 6.046 rs116853455 1.732 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1404964_H GCST90026843 Vaginal microbiome MetaCyc pathway (PWY-5910|superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate)) 315 Chinese ancestry individuals A NR 0.000001 6 rs116853455 1.757 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1408103_H GCST90026764 Vaginal microbiome MetaCyc pathway (P161-PWY|acetylene degradation) 315 Chinese ancestry individuals A NR 0.000004 5.398 rs116853455 1.678 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
Database
Acc Id
Source(s)
GWAS Catalog GCST90026938 GWAS Catalog

Note Type Note Reference