GWAS1668641_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1668641_H (esophageal ulcer QTL GWAS1668641 (human)) Homo sapiens

Symbol: GWAS1668641_H
Name: esophageal ulcer QTL GWAS1668641 (human)
RGD ID: 597611781
Trait: esophageal ulcer
LOD Score: Not Available
P Value: 8.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386159,740,797 - 159,740,798RGD_MAPPER_PIPELINEGRCh38
GRCh376160,161,829 - 160,161,830RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
730872SOD2superoxide dismutase 26159669069159762281Human
1321461WTAPWT1 associated protein6159726693159756319Human


Peak: (rs919548295)
Human AssemblyChrPosition (strand)Source
GRCh386159,740,797 - 159,740,798RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
597611781GWAS1668641_Hesophageal ulcer QTL GWAS1668641 (human)8e-12esophageal ulcer6159740797159740798Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1668641_H GCST90480289 Ulcer of esophagus (PheCode 530.12) 254 African American or Afro-Caribbean cases, 121,164 African American or Afro-Caribbean controls, 2,694 European ancestry cases, 444,824 European ancestry controls, 216 Hispanic or Latin American cases, 59,353 Hispanic or Latin American controls G 0.9984 8E-12 11.097 rs919548295 2.725 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90480289 GWAS Catalog

Note Type Note Reference