GWAS1656732_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1656732_H (mean corpuscular hemoglobin concentration QTL GWAS1656732 (human)) Homo sapiens

Symbol: GWAS1656732_H
Name: mean corpuscular hemoglobin concentration QTL GWAS1656732 (human)
RGD ID: 597599872
Trait: mean corpuscular hemoglobin concentration
Measurement Type: mean corpuscular hemoglobin concentration   (CMO:0000291)    
LOD Score: Not Available
P Value: 2.0E-29
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381540,008,490 - 40,008,491RGD_MAPPER_PIPELINEGRCh38
GRCh371540,300,691 - 40,300,692RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1656732_HHumanmean corpuscular hemoglobin concentration  IAGPrs12164905405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1656732_HHumanmean corpuscular hemoglobin concentration  IAGPrs12164905405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322904EIF2AK4eukaryotic translation initiation factor 2 alpha kinase 4153993411540035591Human


Peak: (rs12164905)
Human AssemblyChrPosition (strand)Source
GRCh381540,008,490 - 40,008,491RGD_MAPPER_PIPELINE


1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
597028377GWAS1124451_HRed cell distribution width QTL GWAS1124451 (human)7e-16Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)154000849040008491Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
596978053GWAS1097572_HRed cell distribution width QTL GWAS1097572 (human)7e-16Red cell distribution width154000849040008491Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
407350451GWAS999427_Hobsolete_red blood cell distribution width QTL GWAS999427 (human)7e-16obsolete_red blood cell distribution width154000849040008491Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human

1 to 10 of 18 rows


1 to 10 of 10 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1656732_H GCST90475454 mean corpuscular hemoglobin concentration (MCHC, maximum, inv-norm transformed) 407,343 European ancestry individuals G 0.8214 2E-29 28.699 rs12164905 0.03742 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1640380_H GCST90479674 mean corpuscular hemoglobin (MCH, minimum, inv-norm transformed) 114,836 African American or Afro-Caribbean individuals, 55,792 Hispanic or Latin American individuals, 5,944 East Asian ancestry individuals, 407,317 European ancestry individuals G 0.8347 5E-13 12.302 rs12164905 0.02966 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1641317_H GCST90479672 mean corpuscular hemoglobin (MCH, maximum, inv-norm transformed) 114,852 African American or Afro-Caribbean individuals, 55,783 Hispanic or Latin American individuals, 5,942 East Asian ancestry individuals, 407,288 European ancestry individuals G 0.8347 9E-18 17.046 rs12164905 0.0368 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1641536_H GCST90479673 mean corpuscular hemoglobin (MCH, mean, inv-norm transformed) 114,855 African American or Afro-Caribbean individuals, 55,792 Hispanic or Latin American individuals, 5,944 East Asian ancestry individuals, 407,342 European ancestry individuals G 0.8347 1E-16 16 rs12164905 0.03566 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1124451_H GCST006804 Red cell distribution width 116,666 British ancestry individuals T NR 7E-16 15.155 rs12164905 0.0398081 Red cell distribution width (EFO:0009188)
 PMID:28957414
GWAS1656487_H GCST90475450 mean corpuscular hemoglobin (MCH, minimum, inv-norm transformed) 407,317 European ancestry individuals G 0.8214 3E-23 22.523 rs12164905 0.03575 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1656545_H GCST90475446 mean corpuscular hemoglobin (MCH, mean, inv-norm transformed) 407,342 European ancestry individuals G 0.8214 8E-33 32.097 rs12164905 0.04296 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1669091_H GCST90475458 mean corpuscular hemoglobin concentration (MCHC, mean, inv-norm transformed) 407,345 European ancestry individuals G 0.8214 4E-27 26.398 rs12164905 0.03648 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1734995_H GCST90002363 Red blood cell count 545,203 European ancestry individuals T 0.184888 4E-20 19.398 rs12164905 0.021967 red blood cell density (OBA:2045260)
 PMID:32888493
GWAS1735622_H GCST90002367 Red blood cell count 727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals T 0.144497 2E-17 16.699 rs12164905 N/A red blood cell density (OBA:2045260)
 PMID:32888493
1 to 10 of 10 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90475454 GWAS Catalog

Note Type Note Reference