GWAS1628879_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1628879_H (atrial fibrillation QTL GWAS1628879 (human)) Homo sapiens

Symbol: GWAS1628879_H
Name: atrial fibrillation QTL GWAS1628879 (human)
RGD ID: 597532805
Trait: atrial fibrillation
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812104,098,225 - 104,098,226RGD_MAPPER_PIPELINEGRCh38
GRCh3712104,492,003 - 104,492,004RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1628879_HHumanatrial fibrillation  IAGPrs2629755405850206 GWAS_CATALOGPMID:36653681

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1628879_HHumanAtrial fibrillation  IAGPrs2629755405850206 GWAS_CATALOGPMID:36653681
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1628879_HHumanatrial fibrillation  IAGPrs2629755405850206 GWAS_CATALOGPMID:36653681

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1316555HCFC2host cell factor C212104064531104106524Human


Peak: (rs2629755)
Human AssemblyChrPosition (strand)Source
GRCh3812104,098,225 - 104,098,226RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1559125SPSL2_HSerum P-selectin level QTL 2 (human)2.59Serum P-selectin level1289897665115897665Human
1298449UAE2_HUrinary albumin excretion QTL 2 (human)20.005Urinary albumin excretionurine albumin:creatinine ratio (ACR)12102836889128836889Human
1643258BW205_HBody weight QTL 205 (human)4.080.00001Body fat amountpercent body fat1296630114122630114Human
1643452BW104_HBody weight QTL 104 (human)1.890.005Body fat amountabdominal visceral12102395874128395874Human
1357361BW37_HBody weight QTL 37 (human)4.080.00001Body fat amount12102836889116423339Human
597531771GWAS1627845_Hatrial fibrillation QTL GWAS1627845 (human)2e-11atrial fibrillation12104098225104098226Human
597532805GWAS1628879_Hatrial fibrillation QTL GWAS1628879 (human)2e-08atrial fibrillation12104098225104098226Human
1643264BW195_HBody weight QTL 195 (human)0.0151Body weightBMI1289897665115897665Human
1357387BW58_HBody weight QTL 58 (human)2.30.0001Body weightfat free mass after exercise training1289438856115438856Human
1358827MULTSCL22_HMultiple sclerosis susceptibility QTL 22 (human)Multiple sclerosis susceptibility1289897665115897665Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1628879_H GCST90244769 Atrial fibrillation 6,825 Japanese ancestry male cases, 74,225 Japanese ancestry male controls ? NR 2E-8 7.699 rs2629755 0.103215 atrial fibrillation (EFO:0000275)
 PMID:36653681
GWAS1627845_H GCST90204201 Atrial fibrillation 77,690 European ancestry cases, 1,167,040 European ancestry controls, 67,864 Japanese ancestry cases, 1,026,594 Japanese ancestry controls G 0.2128 2E-11 10.699 rs2629755 0.0511 atrial fibrillation (EFO:0000275)
 PMID:36653681
Database
Acc Id
Source(s)
GWAS Catalog GCST90244769 GWAS Catalog

Note Type Note Reference