Advanced Search (OLGA)

Gene: HCFC2 (host cell factor C2) Homo sapiens

Subscribe to Updates

Analyze

Symbol:

HCFC2

Name:

host cell factor C2

RGD ID:

1316555

HGNC Page

HGNC:24972

Description:

Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within antiviral innate immune response; immune response involved in response to exogenous dsRNA; and regulation of toll-like receptor 3 signaling pathway. Located in cytosol; nucleoplasm; and plasma membrane. Part of MLL1 complex and Set1C/COMPASS complex.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

C2 factor; FLJ94012; HCF-2; HCF2; host cell factor 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Hcfc2 (host cell factor C2)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Rattus norvegicus (Norway rat):	Hcfc2 (host cell factor C2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Chinchilla lanigera (long-tailed chinchilla):	Hcfc2 (host cell factor C2)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	HCFC2 (host cell factor C2)	NCBI	Ortholog
Canis lupus familiaris (dog):	HCFC2 (host cell factor C2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hcfc2 (host cell factor C2)	NCBI	Ortholog
Sus scrofa (pig):	HCFC2 (host cell factor C2)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Chlorocebus sabaeus (green monkey):	HCFC2 (host cell factor C2)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Hcfc2 (host cell factor C2)	NCBI	Ortholog
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Hcfc2 (host cell factor C2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Hcfc2 (host cell factor C2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hcfc2 (host cell factor C2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|ZFIN)
Drosophila melanogaster (fruit fly):	Hcf	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hcf-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	hcfc2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

HCFC2P1

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	104,064,531 - 104,106,524 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	104,064,531 - 104,106,524 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	104,458,309 - 104,500,302 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	102,982,457 - 103,021,373 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	102,960,793 - 102,999,710	NCBI
Celera	12	104,121,988 - 104,164,044 (+)	NCBI		Celera
Cytogenetic Map	12	q23.3	NCBI
HuRef	12	101,517,939 - 101,559,991 (+)	NCBI		HuRef
CHM1_1	12	104,424,156 - 104,466,216 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	104,026,224 - 104,068,218 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HCFC2	Human	1,2-dimethylhydrazine	decreases expression	ISO	Hcfc2 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of HCFC2 mRNA	CTD	PMID:22206623
HCFC2	Human	17beta-hydroxy-5alpha-androstan-3-one	increases expression	EXP		6480464	Dihydrotestosterone results in increased expression of HCFC2 mRNA	CTD	PMID:29581250
HCFC2	Human	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Hcfc2 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of HCFC2 mRNA	CTD	PMID:21570461
HCFC2	Human	3-chloropropane-1,2-diol	increases expression	ISO	Hcfc2 (Rattus norvegicus)	6480464	alpha-Chlorohydrin results in increased expression of HCFC2 protein	CTD	PMID:34915118
HCFC2	Human	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of HCFC2 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of HCFC2 mRNA	CTD	PMID:28628672
HCFC2	Human	benzo[a]pyrene	increases expression	ISO	Hcfc2 (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of HCFC2 mRNA	CTD	PMID:22228805
HCFC2	Human	bisphenol A	affects expression	ISO	Hcfc2 (Rattus norvegicus)	6480464	bisphenol A affects the expression of HCFC2 mRNA	CTD	PMID:25181051
HCFC2	Human	bisphenol A	increases expression	ISO	Hcfc2 (Mus musculus)	6480464	bisphenol A results in increased expression of HCFC2 mRNA	CTD	PMID:38074096
HCFC2	Human	bisphenol A	increases expression	ISO	Hcfc2 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of HCFC2 mRNA	CTD	PMID:30816183 and PMID:32528016
HCFC2	Human	bisphenol A	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of HCFC2 mRNA	CTD	PMID:28628672
HCFC2	Human	bisphenol F	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of HCFC2 mRNA	CTD	PMID:28628672
HCFC2	Human	butanal	decreases expression	EXP		6480464	butyraldehyde results in decreased expression of HCFC2 mRNA	CTD	PMID:26079696
HCFC2	Human	cadmium atom	multiple interactions	EXP		6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of HCFC2 mRNA	CTD	PMID:35301059
HCFC2	Human	cadmium dichloride	increases expression	EXP		6480464	Cadmium Chloride results in increased expression of HCFC2 mRNA	CTD	PMID:38568856
HCFC2	Human	cadmium dichloride	multiple interactions	EXP		6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of HCFC2 mRNA	CTD	PMID:35301059
HCFC2	Human	CGP 52608	multiple interactions	EXP		6480464	CGP 52608 promotes the reaction [RORA protein binds to HCFC2 gene]	CTD	PMID:28238834
HCFC2	Human	chlorpyrifos	increases expression	ISO	Hcfc2 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of HCFC2 mRNA	CTD	PMID:37019170
HCFC2	Human	cisplatin	multiple interactions	EXP		6480464	[Cisplatin co-treated with jinfukang] results in decreased expression of HCFC2 mRNA	CTD	PMID:27392435
HCFC2	Human	cobalt dichloride	increases expression	ISO	Hcfc2 (Rattus norvegicus)	6480464	cobaltous chloride results in increased expression of HCFC2 mRNA	CTD	PMID:24386269
HCFC2	Human	copper(II) sulfate	increases expression	EXP		6480464	Copper Sulfate results in increased expression of HCFC2 mRNA	CTD	PMID:19549813
HCFC2	Human	crocidolite asbestos	increases expression	EXP		6480464	Asbestos and Crocidolite results in increased expression of HCFC2 mRNA	CTD	PMID:18687144
HCFC2	Human	cyclosporin A	increases expression	EXP		6480464	Cyclosporine results in increased expression of HCFC2 mRNA	CTD	PMID:25562108
HCFC2	Human	dexamethasone	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of HCFC2 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of HCFC2 mRNA	CTD	PMID:28628672
HCFC2	Human	diazinon	increases methylation	EXP		6480464	Diazinon results in increased methylation of HCFC2 gene	CTD	PMID:22964155
HCFC2	Human	dorsomorphin	multiple interactions	EXP		6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of HCFC2 mRNA	CTD	PMID:27188386
HCFC2	Human	doxorubicin	decreases expression	EXP		6480464	Doxorubicin results in decreased expression of HCFC2 mRNA	CTD	PMID:29803840
HCFC2	Human	ethanol	affects splicing	ISO	Hcfc2 (Mus musculus)	6480464	Ethanol affects the splicing of HCFC2 mRNA	CTD	PMID:30319688
HCFC2	Human	ethyl methanesulfonate	increases expression	EXP		6480464	Ethyl Methanesulfonate results in increased expression of HCFC2 mRNA	CTD	PMID:23649840
HCFC2	Human	indometacin	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of HCFC2 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of HCFC2 mRNA	CTD	PMID:28628672
HCFC2	Human	methapyrilene	decreases expression	ISO	Hcfc2 (Rattus norvegicus)	6480464	Methapyrilene results in decreased expression of HCFC2 mRNA	CTD	PMID:30467583
HCFC2	Human	methyl methanesulfonate	increases expression	EXP		6480464	Methyl Methanesulfonate results in increased expression of HCFC2 mRNA	CTD	PMID:23649840
HCFC2	Human	methylmercury chloride	decreases expression	EXP		6480464	methylmercuric chloride results in decreased expression of HCFC2 mRNA	CTD	PMID:28001369
HCFC2	Human	nickel dichloride	affects expression	ISO	Hcfc2 (Rattus norvegicus)	6480464	nickel chloride affects the expression of HCFC2 mRNA	CTD	PMID:22546817
HCFC2	Human	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of HCFC2 mRNA	CTD	PMID:22230336
HCFC2	Human	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of HCFC2 mRNA	CTD	PMID:29067470
HCFC2	Human	pirinixic acid	multiple interactions	EXP		6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in decreased expression of HCFC2 mRNA	CTD	PMID:19710929
HCFC2	Human	resveratrol	multiple interactions	EXP		6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of HCFC2 mRNA	CTD	PMID:23557933
HCFC2	Human	SB 431542	multiple interactions	EXP		6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of HCFC2 mRNA	CTD	PMID:27188386
HCFC2	Human	sunitinib	increases expression	EXP		6480464	Sunitinib results in increased expression of HCFC2 mRNA	CTD	PMID:31533062
HCFC2	Human	thioacetamide	increases methylation	ISO	Hcfc2 (Rattus norvegicus)	6480464	Thioacetamide results in increased methylation of HCFC2 promoter	CTD	PMID:27914986
HCFC2	Human	triphenyl phosphate	increases expression	ISO	Hcfc2 (Rattus norvegicus)	6480464	triphenyl phosphate results in increased expression of HCFC2 mRNA	CTD	PMID:30589522
HCFC2	Human	triphenyl phosphate	affects expression	EXP		6480464	triphenyl phosphate affects the expression of HCFC2 mRNA	CTD	PMID:37042841
HCFC2	Human	urethane	increases expression	EXP		6480464	Urethane results in increased expression of HCFC2 mRNA	CTD	PMID:28818685
HCFC2	Human	valdecoxib	increases expression	ISO	Hcfc2 (Rattus norvegicus)	6480464	valdecoxib results in increased expression of HCFC2 mRNA	CTD	PMID:24136188
HCFC2	Human	valproic acid	increases expression	ISO	Hcfc2 (Mus musculus)	6480464	Valproic Acid results in increased expression of HCFC2 mRNA	CTD	PMID:19136453 and PMID:21427059
HCFC2	Human	valproic acid	increases expression	EXP		6480464	Valproic Acid results in increased expression of HCFC2 mRNA	CTD	PMID:23179753 and PMID:26272509
HCFC2	Human	valproic acid	multiple interactions	EXP		6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of HCFC2 mRNA	CTD	PMID:27188386
HCFC2	Human	valproic acid	decreases expression	EXP		6480464	Valproic Acid results in decreased expression of HCFC2 mRNA	CTD	PMID:27188386

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HCFC2	Human	antiviral innate immune response	acts_upstream_of_or_within	IEA	UniProtKB:Q9D968 and ensembl:ENSMUSP00000020478	150520179		Ensembl	GO_REF:0000107
HCFC2	Human	chromatin remodeling	involved_in	IBA	FB:FBgn0039904 and PANTHER:PTN000582135	150520179		GO_Central	GO_REF:0000033
HCFC2	Human	immune response involved in response to exogenous dsRNA	acts_upstream_of_or_within	IEA	UniProtKB:Q9D968 and ensembl:ENSMUSP00000020478	150520179		Ensembl	GO_REF:0000107
HCFC2	Human	negative regulation of transcription by RNA polymerase II	involved_in	ISS	UniProtKB:Q5RKG2	150520179		UniProt	GO_REF:0000024
HCFC2	Human	positive regulation of DNA-templated transcription	involved_in	IEA	GO:0003713	150520179		GOC	GO_REF:0000108
HCFC2	Human	regulation of DNA-templated transcription	involved_in	IBA	FB:FBgn0039904 more ...	150520179		GO_Central	GO_REF:0000033
HCFC2	Human	regulation of DNA-templated transcription	involved_in	IEA	ARBA:ARBA00028138	150520179		UniProt	GO_REF:0000117
HCFC2	Human	regulation of toll-like receptor 3 signaling pathway	acts_upstream_of_or_within	IEA	UniProtKB:Q9D968 and ensembl:ENSMUSP00000020478	150520179		Ensembl	GO_REF:0000107
HCFC2	Human	regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q9D968 and ensembl:ENSMUSP00000020478	150520179		Ensembl	GO_REF:0000107
HCFC2	Human	regulation of transcription by RNA polymerase II	involved_in	TAS		150520179	PMID:10196288	PINC	PMID:10196288
HCFC2	Human	viral process	involved_in	TAS		150520179	PMID:10196288	PINC	PMID:10196288

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HCFC2	Human	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	150520179		UniProt	GO_REF:0000043
HCFC2	Human	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	150520179		UniProt	GO_REF:0000044
HCFC2	Human	cytoplasm	located_in	IDA		150520179	PMID:10196288	UniProt	PMID:10196288
HCFC2	Human	cytosol	located_in	IDA		150520179		HPA	GO_REF:0000052
HCFC2	Human	histone methyltransferase complex	part_of	IBA	FB:FBgn0039904 more ...	150520179		GO_Central	GO_REF:0000033
HCFC2	Human	MLL1 complex	part_of	IPI		150520179	PMID:23508102	ComplexPortal	PMID:23508102
HCFC2	Human	MLL1/2 complex	part_of	IPI		150520179	PMID:23508102	ComplexPortal	PMID:23508102
HCFC2	Human	nucleoplasm	located_in	IDA		150520179		HPA	GO_REF:0000052
HCFC2	Human	nucleoplasm	located_in	TAS		150520179		Reactome	Reactome:R-HSA-9821235
HCFC2	Human	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
HCFC2	Human	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
HCFC2	Human	nucleus	located_in	IDA		150520179	PMID:10196288	PINC	PMID:10196288
HCFC2	Human	plasma membrane	located_in	IDA		150520179		HPA	GO_REF:0000052
HCFC2	Human	Set1C/COMPASS complex	part_of	IPI		150520179	PMID:23508102	ComplexPortal	PMID:23508102

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HCFC2	Human	protein binding	enables	IPI	UniProtKB:Q8IVD9	150520179	PMID:25036637 more ...	IntAct	PMID:25036637 more ...
HCFC2	Human	transcription coactivator activity	enables	TAS		150520179	PMID:10196288	PINC	PMID:10196288
HCFC2	Human	transcription coactivator activity	enables	IBA	PANTHER:PTN000582135 more ...	150520179		GO_Central	GO_REF:0000033
HCFC2	Human	transcription coregulator activity	enables	IEA	UniProtKB:Q9D968 and ensembl:ENSMUSP00000020478	150520179		Ensembl	GO_REF:0000107

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HCFC2	Human	RNA polymerase II transcription initiation pathway		TAS		9681728		RGD

#	Reference Title	Reference Citation
1.	GOAs Human GO annotations	GOA_HUMAN data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	ATAC-king the complexity of SAGA during evolution.	Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111.
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:8125298	PMID:10196288	PMID:15199122	PMID:15489334	PMID:16344560	PMID:18029348	PMID:20305087	PMID:21873635	PMID:21903422	PMID:22379092	PMID:23508102	PMID:24981860
PMID:25036637	PMID:26186194	PMID:26496610	PMID:26841866	PMID:26886794	PMID:27705803	PMID:28514442	PMID:29395067	PMID:29507755	PMID:29509190	PMID:30804502	PMID:30833792
PMID:31049581	PMID:31076518	PMID:31527615	PMID:31804488	PMID:32393512	PMID:32479599	PMID:32645484	PMID:32694731	PMID:33961781	PMID:34079125	PMID:34591877	PMID:34857952
PMID:35140242	PMID:35271311	PMID:35446349	PMID:35844135	PMID:35850772	PMID:37689310	PMID:37974198

HCFC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	104,064,531 - 104,106,524 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	104,064,531 - 104,106,524 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	104,458,309 - 104,500,302 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	102,982,457 - 103,021,373 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	102,960,793 - 102,999,710	NCBI
Celera	12	104,121,988 - 104,164,044 (+)	NCBI		Celera
Cytogenetic Map	12	q23.3	NCBI
HuRef	12	101,517,939 - 101,559,991 (+)	NCBI		HuRef
CHM1_1	12	104,424,156 - 104,466,216 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	104,026,224 - 104,068,218 (+)	NCBI		T2T-CHM13v2.0

Hcfc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	82,534,841 - 82,631,699 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	82,531,994 - 82,578,262 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	82,699,007 - 82,795,865 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	82,696,160 - 82,742,428 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	82,161,752 - 82,204,137 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	82,128,806 - 82,172,227 (+)	NCBI		MGSCv36	mm8
Celera	10	84,683,495 - 84,725,880 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.93	NCBI

Hcfc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	22,875,440 - 22,907,391 (-)	NCBI		GRCr8
mRatBN7.2	7	20,983,986 - 21,019,826 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	20,991,017 - 21,019,801 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	22,965,370 - 22,994,273 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	25,128,073 - 25,156,976 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	24,905,147 - 24,934,050 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	27,107,931 - 27,136,658 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	27,108,116 - 27,136,652 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	27,226,468 - 27,255,042 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	23,216,061 - 23,245,815 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	23,236,332 - 23,266,086 (-)	NCBI
Celera	7	18,171,737 - 18,200,488 (-)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

Hcfc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	38,730,054 - 38,760,115 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	38,729,700 - 38,758,398 (+)	NCBI	ChiLan1.0	ChiLan1.0

HCFC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	112,126,861 - 112,173,027 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	112,123,257 - 112,165,045 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	101,640,561 - 101,682,283 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	105,036,687 - 105,077,780 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	105,036,716 - 105,074,532 (+)	Ensembl	panpan1.1		panPan2

HCFC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	42,560,028 - 42,596,335 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	42,560,075 - 42,597,330 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	42,929,525 - 42,967,601 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	43,217,729 - 43,255,981 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	43,217,746 - 43,323,057 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	42,483,517 - 42,521,761 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	42,582,798 - 42,620,818 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	42,853,716 - 42,891,992 (+)	NCBI		UU_Cfam_GSD_1.0

Hcfc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	17,378,117 - 17,415,837 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	10,390,268 - 10,426,206 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	10,390,603 - 10,426,232 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HCFC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	80,368,240 - 80,409,775 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	80,366,826 - 80,409,798 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	83,937,553 - 83,979,573 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HCFC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	99,264,638 - 99,303,923 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	99,264,674 - 99,303,732 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	145,689,678 - 145,740,127 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hcfc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	4,629,669 - 4,660,413 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	4,627,848 - 4,660,448 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in HCFC2
35 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 12q23.1-23.3(chr12:100670616-108583607)x1	copy number loss	See cases [RCV000051320]	Chr12:100670616..108583607 [GRCh38] Chr12:101064394..108977383 [GRCh37] Chr12:99588525..107501512 [NCBI36] Chr12:12q23.1-23.3	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3	copy number gain	See cases [RCV000510482]	Chr12:173787..133777902 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh38/hg38 12q23.3(chr12:103500125-104726872)x1	copy number loss	See cases [RCV000138809]	Chr12:103500125..104726872 [GRCh38] Chr12:103893903..105120650 [GRCh37] Chr12:102418033..103644780 [NCBI36] Chr12:12q23.3	uncertain significance
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3	copy number gain	See cases [RCV000139555]	Chr12:121271..133196807 [GRCh38] Chr12:282465..133773393 [GRCh37] Chr12:100698..132283466 [NCBI36] Chr12:12p13.33-q24.33	pathogenic
GRCh38/hg38 12q21.33-24.11(chr12:91044318-109133210)x3	copy number gain	See cases [RCV000142447]	Chr12:91044318..109133210 [GRCh38] Chr12:91438095..109571015 [GRCh37] Chr12:89962226..108055398 [NCBI36] Chr12:12q21.33-24.11	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3	copy number gain	See cases [RCV000258805]	Chr12:1..133851895 [GRCh37] Chr12:12p13.33-q24.33	pathogenic\|likely pathogenic
GRCh37/hg19 12q23.1-23.3(chr12:100580198-105804075)x3	copy number gain	See cases [RCV000445929]	Chr12:100580198..105804075 [GRCh37] Chr12:12q23.1-23.3	uncertain significance
GRCh37/hg19 12q23.2-24.11(chr12:103044333-111639805)x1	copy number loss	See cases [RCV000445832]	Chr12:103044333..111639805 [GRCh37] Chr12:12q23.2-24.11	likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)	copy number gain	See cases [RCV000511643]	Chr12:173787..133777902 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
NM_013320.3(HCFC2):c.160A>T (p.Thr54Ser)	single nucleotide variant	not specified [RCV004322093]	Chr12:104064720 [GRCh38] Chr12:104458498 [GRCh37] Chr12:12q23.3	uncertain significance
GRCh37/hg19 12q23.2-23.3(chr12:103588380-105161579)x3	copy number gain	not provided [RCV002472838]	Chr12:103588380..105161579 [GRCh37] Chr12:12q23.2-23.3	uncertain significance
GRCh37/hg19 12q23.3-24.12(chr12:104230462-111984801)x1	copy number loss	not provided [RCV001834231]	Chr12:104230462..111984801 [GRCh37] Chr12:12q23.3-24.12	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3	copy number gain	not provided [RCV000750246]	Chr12:191619..133777645 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3	copy number gain	not provided [RCV000750253]	Chr12:621220..133779118 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12q23.3(chr12:104477393-104842357)x3	copy number gain	not provided [RCV000750540]	Chr12:104477393..104842357 [GRCh37] Chr12:12q23.3	benign
GRCh37/hg19 12q23.2-23.3(chr12:102414522-105845768)x1	copy number loss	not provided [RCV000846678]	Chr12:102414522..105845768 [GRCh37] Chr12:12q23.2-23.3	uncertain significance
GRCh37/hg19 12q23.1-23.3(chr12:100580198-105804075)	copy number gain	not specified [RCV002053014]	Chr12:100580198..105804075 [GRCh37] Chr12:12q23.1-23.3	uncertain significance
GRCh37/hg19 12q23.2-24.11(chr12:103044333-111639805)	copy number loss	not specified [RCV002053016]	Chr12:103044333..111639805 [GRCh37] Chr12:12q23.2-24.11	likely pathogenic
NM_013320.3(HCFC2):c.1865A>G (p.Gln622Arg)	single nucleotide variant	not specified [RCV004111914]	Chr12:104098467 [GRCh38] Chr12:104492245 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.15C>A (p.Ser5Arg)	single nucleotide variant	not specified [RCV004109573]	Chr12:104064575 [GRCh38] Chr12:104458353 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1868G>A (p.Ser623Asn)	single nucleotide variant	not specified [RCV004228735]	Chr12:104098470 [GRCh38] Chr12:104492248 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.185C>T (p.Pro62Leu)	single nucleotide variant	not specified [RCV004157789]	Chr12:104066188 [GRCh38] Chr12:104459966 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.2181A>C (p.Gln727His)	single nucleotide variant	not specified [RCV004352549]	Chr12:104103075 [GRCh38] Chr12:104496853 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.2131T>G (p.Ser711Ala)	single nucleotide variant	not specified [RCV004190488]	Chr12:104103025 [GRCh38] Chr12:104496803 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1075G>A (p.Ala359Thr)	single nucleotide variant	not specified [RCV004222845]	Chr12:104086858 [GRCh38] Chr12:104480636 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1299A>G (p.Ile433Met)	single nucleotide variant	not specified [RCV004227255]	Chr12:104093400 [GRCh38] Chr12:104487178 [GRCh37] Chr12:12q23.3	likely benign
NM_013320.3(HCFC2):c.1225A>G (p.Met409Val)	single nucleotide variant	not specified [RCV004187896]	Chr12:104087008 [GRCh38] Chr12:104480786 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1204G>T (p.Asp402Tyr)	single nucleotide variant	not specified [RCV004168610]	Chr12:104086987 [GRCh38] Chr12:104480765 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1933C>G (p.Pro645Ala)	single nucleotide variant	not specified [RCV004132077]	Chr12:104102022 [GRCh38] Chr12:104495800 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1732C>T (p.Pro578Ser)	single nucleotide variant	not specified [RCV004282776]	Chr12:104096425 [GRCh38] Chr12:104490203 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.294T>A (p.Asn98Lys)	single nucleotide variant	not specified [RCV004399341]	Chr12:104066297 [GRCh38] Chr12:104460075 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1472C>A (p.Thr491Asn)	single nucleotide variant	not specified [RCV004362463]	Chr12:104095369 [GRCh38] Chr12:104489147 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1073C>T (p.Pro358Leu)	single nucleotide variant	not specified [RCV004399337]	Chr12:104086856 [GRCh38] Chr12:104480634 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1262G>T (p.Ser421Ile)	single nucleotide variant	not specified [RCV004399338]	Chr12:104088016 [GRCh38] Chr12:104481794 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1373C>T (p.Thr458Met)	single nucleotide variant	not specified [RCV004399339]	Chr12:104093474 [GRCh38] Chr12:104487252 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1405G>A (p.Ala469Thr)	single nucleotide variant	not specified [RCV004399340]	Chr12:104093506 [GRCh38] Chr12:104487284 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.403T>C (p.Tyr135His)	single nucleotide variant	not specified [RCV004399342]	Chr12:104068037 [GRCh38] Chr12:104461815 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.910C>G (p.Gln304Glu)	single nucleotide variant	not specified [RCV004930910]	Chr12:104082748 [GRCh38] Chr12:104476526 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.824C>T (p.Pro275Leu)	single nucleotide variant	not specified [RCV004624146]	Chr12:104082556 [GRCh38] Chr12:104476334 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1273G>A (p.Val425Ile)	single nucleotide variant	not specified [RCV004627543]	Chr12:104088027 [GRCh38] Chr12:104481805 [GRCh37] Chr12:12q23.3	likely benign
NM_013320.3(HCFC2):c.1115C>A (p.Ser372Tyr)	single nucleotide variant	not specified [RCV004627544]	Chr12:104086898 [GRCh38] Chr12:104480676 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.2351G>A (p.Gly784Asp)	single nucleotide variant	not specified [RCV004627545]	Chr12:104103245 [GRCh38] Chr12:104497023 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.2101A>G (p.Thr701Ala)	single nucleotide variant	not specified [RCV004917404]	Chr12:104102995 [GRCh38] Chr12:104496773 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1261A>T (p.Ser421Cys)	single nucleotide variant	not specified [RCV004917406]	Chr12:104088015 [GRCh38] Chr12:104481793 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.709A>G (p.Thr237Ala)	single nucleotide variant	not specified [RCV004917410]	Chr12:104080772 [GRCh38] Chr12:104474550 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.970G>A (p.Gly324Ser)	single nucleotide variant	not specified [RCV004917405]	Chr12:104082808 [GRCh38] Chr12:104476586 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.515C>T (p.Ser172Phe)	single nucleotide variant	not specified [RCV004917409]	Chr12:104079486 [GRCh38] Chr12:104473264 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.967A>T (p.Ile323Phe)	single nucleotide variant	not specified [RCV004917408]	Chr12:104082805 [GRCh38] Chr12:104476583 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1744G>C (p.Glu582Gln)	single nucleotide variant	not specified [RCV004917407]	Chr12:104098346 [GRCh38] Chr12:104492124 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.1175C>T (p.Thr392Ile)	single nucleotide variant	not specified [RCV004930908]	Chr12:104086958 [GRCh38] Chr12:104480736 [GRCh37] Chr12:12q23.3	uncertain significance
NM_013320.3(HCFC2):c.404A>G (p.Tyr135Cys)	single nucleotide variant	not specified [RCV004930909]	Chr12:104068038 [GRCh38] Chr12:104461816 [GRCh37] Chr12:12q23.3	uncertain significance

Predicted Target Of

	Summary Value
Count of predictions:	1132
Count of miRNA genes:	705
Interacting mature miRNAs:	796
Transcripts:	ENST00000229330, ENST00000544223, ENST00000547194, ENST00000550335, ENST00000550444, ENST00000552343
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1559125	SPSL2_H	Serum P-selectin level QTL 2 (human)	2.59		Serum P-selectin level		12	89897665	115897665	Human
1298449	UAE2_H	Urinary albumin excretion QTL 2 (human)	2	0.005	Urinary albumin excretion	urine albumin:creatinine ratio (ACR)	12	102836889	128836889	Human
1643258	BW205_H	Body weight QTL 205 (human)	4.08	0.00001	Body fat amount	percent body fat	12	96630114	122630114	Human
597034821	GWAS1130895_H	blood protein measurement QTL GWAS1130895 (human)		0.000005	blood protein amount (VT:0005416)	blood protein measurement (CMO:0000028)	12	104067156	104067157	Human
1643452	BW104_H	Body weight QTL 104 (human)	1.89	0.005	Body fat amount	abdominal visceral	12	102395874	128395874	Human
1357361	BW37_H	Body weight QTL 37 (human)	4.08	0.00001	Body fat amount		12	102836889	116423339	Human
597531771	GWAS1627845_H	atrial fibrillation QTL GWAS1627845 (human)		2e-11	atrial fibrillation		12	104098225	104098226	Human
597532805	GWAS1628879_H	atrial fibrillation QTL GWAS1628879 (human)		2e-08	atrial fibrillation		12	104098225	104098226	Human
1643264	BW195_H	Body weight QTL 195 (human)		0.0151	Body weight	BMI	12	89897665	115897665	Human
1357387	BW58_H	Body weight QTL 58 (human)	2.3	0.0001	Body weight	fat free mass after exercise training	12	89438856	115438856	Human
1358827	MULTSCL22_H	Multiple sclerosis susceptibility QTL 22 (human)			Multiple sclerosis susceptibility		12	89897665	115897665	Human
597145240	GWAS1241314_H	systolic blood pressure QTL GWAS1241314 (human)		0.0000008	systolic blood pressure	systolic blood pressure (CMO:0000004)	12	104102496	104102497	Human

SHGC-64926

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	104,496,806 - 104,497,021	UniSTS	GRCh37
Build 36	12	103,020,936 - 103,021,151	RGD	NCBI36
Celera	12	104,160,548 - 104,160,763	RGD
Cytogenetic Map	12	q23.3	UniSTS
HuRef	12	101,556,494 - 101,556,709	UniSTS

RH103342

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	104,496,899 - 104,497,027	UniSTS	GRCh37
Build 36	12	103,021,029 - 103,021,157	RGD	NCBI36
Celera	12	104,160,641 - 104,160,769	RGD
Cytogenetic Map	12	q23.3	UniSTS
HuRef	12	101,556,587 - 101,556,715	UniSTS
GeneMap99-GB4 RH Map	12	409.83	UniSTS

RH122756

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	104,484,317 - 104,484,623	UniSTS	GRCh37
Build 36	12	103,008,447 - 103,008,753	RGD	NCBI36
Celera	12	104,148,058 - 104,148,364	RGD
Cytogenetic Map	12	q23.3	UniSTS
HuRef	12	101,544,005 - 101,544,311	UniSTS
TNG Radiation Hybrid Map	12	49164.0	UniSTS

G64552

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	104,488,903 - 104,489,157	UniSTS	GRCh37
Build 36	12	103,013,033 - 103,013,287	RGD	NCBI36
Celera	12	104,152,645 - 104,152,899	RGD
Cytogenetic Map	12	q23.3	UniSTS
HuRef	12	101,548,592 - 101,548,846	UniSTS

SHGC-142174

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	104,499,059 - 104,499,395	UniSTS	GRCh37
Build 36	12	103,023,189 - 103,023,525	RGD	NCBI36
Celera	12	104,162,801 - 104,163,137	RGD
Cytogenetic Map	12	q23.3	UniSTS
HuRef	12	101,558,747 - 101,559,084	UniSTS
TNG Radiation Hybrid Map	12	49191.0	UniSTS

STS-H93140

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	104,500,072 - 104,500,227	UniSTS	GRCh37
Build 36	12	103,024,202 - 103,024,357	RGD	NCBI36
Celera	12	104,163,814 - 104,163,969	RGD
Cytogenetic Map	12	q23.3	UniSTS
HuRef	12	101,559,761 - 101,559,916	UniSTS
GeneMap99-GB4 RH Map	12	409.83	UniSTS
NCBI RH Map	12	689.3	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
1204	2439	2788	2253	4974	1726	2351	6	624	1951	465	2270	7306	6472	53	3734	1	852	1744	1617	175	1


RefSeq Transcripts	NM_013320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017019241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017019242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047428753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047428754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054371892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054371893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054371894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_944526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_944527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC078819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC084359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC089983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF117210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI247087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK223342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK296523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK313466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC006558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC033799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DB030069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000229330 ⟹ ENSP00000229330

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	104,064,531 - 104,106,524 (+)	Ensembl

Ensembl Acc Id:

ENST00000544223 ⟹ ENSP00000442942

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	104,064,542 - 104,103,466 (+)	Ensembl

Ensembl Acc Id:

ENST00000547194

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	104,080,433 - 104,082,756 (+)	Ensembl

Ensembl Acc Id:

ENST00000550335

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	104,090,923 - 104,103,301 (+)	Ensembl

Ensembl Acc Id:

ENST00000550444 ⟹ ENSP00000447952

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	104,064,814 - 104,079,473 (+)	Ensembl

Ensembl Acc Id:

ENST00000552343

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	104,098,124 - 104,103,407 (+)	Ensembl

RefSeq Acc Id:

NM_013320 ⟹ NP_037452

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	104,064,531 - 104,106,524 (+)	NCBI
GRCh37	12	104,458,236 - 104,500,302 (+)	RGD
Build 36	12	102,982,457 - 103,021,373 (+)	NCBI Archive
Celera	12	104,121,988 - 104,164,044 (+)	RGD
HuRef	12	101,517,939 - 101,559,991 (+)	ENTREZGENE
CHM1_1	12	104,424,156 - 104,466,216 (+)	NCBI
T2T-CHM13v2.0	12	104,026,224 - 104,068,218 (+)	NCBI

Sequence:

show sequence

ATTGTGGGCAGAGGGGCGGGGGTTGGGAAGATGGCGGCTCCCAGCCTCCTCAACTGGAGGCGAGTTTCTTCCTTCACGGGGCCGGTCCCCCGCGCCCGGCACGGACACCGAGCGGTGGCCATCCGGGA
GCTGATGATCATCTTTGGAGGGGGAAATGAGGGCATCGCGGATGAGCTGCACGTCTACAACACGGCTACGAATCAGTGGTTTCTGCCAGCTGTTAGAGGAGATATCCCTCCAGGCTGTGCTGCCCATG
GATTTGTCTGTGATGGTACCAGAATATTAGTATTTGGGGGAATGGTTGAATATGGAAGATACAGCAATGAGTTATATGAGTTACAAGCAAGTCGTTGGTTATGGAAAAAAGTGAAACCCCATCCCCCT
CCTTCTGGTTTACCTCCTTGTCCTCGGCTTGGACATAGCTTCTCTTTATATGGTAACAAATGCTATTTGTTTGGTGGCCTGGCAAACGAAAGCGAAGATTCAAACAATAATGTTCCCAGATATTTAAA
TGATTTTTATGAGTTGGAGCTACAGCATGGCTCTGGTGTTGTGGGTTGGAGCATTCCAGTGACTAAAGGGGTTGTGCCTTCTCCAAGAGAATCCCACACAGCTGTTATATATTGCAAAAAAGATTCTG
GAAGTCCTAAAATGTATGTTTTTGGTGGAATGTGTGGTGCTCGCCTGGATGACCTATGGCAGCTTGACTTAGAAACTATGTCATGGTCAAAACCAGAAACTAAAGGGACAGTGCCACTTCCACGAAGC
CTTCATACAGCCAGTGTTATAGGAAACAAGATGTACATTTTTGGTGGATGGGTCCCACATAAGGGGGAAAATACTGAGACTTCACCTCATGATTGTGAATGGAGATGTACCAGTTCATTTTCTTACCT
AAATCTGGATACAACAGAGTGGACCACCCTAGTATCAGATTCTCAGGAAGATAAAAAAAATTCAAGACCAAGACCAAGAGCTGGCCACTGTGCTGTTGCAATCGGCACTCGATTGTATTTTTGGAGTG
GAAGAGATGGCTACAAAAAAGCACTGAATAGTCAAGTTTGCTGCAAGGATCTTTGGTATCTTGATACTGAGAAACCACCGGCACCATCTCAAGTACAGCTGATCAAAGCCACTACCAACTCCTTTCAT
GTCAAGTGGGATGAAGTGTCTACAGTTGAGGGCTATCTTTTGCAGTTGAGTACAGACTTGCCATACCAAGCTGCATCATCAGATTCTTCAGCAGCACCAAATATGCAAGGAGTCAGGATGGACCCTCA
CAGACAAGGCAGTAATAACATCGTTCCTAACAGTATCAATGATACAATAAACAGCACAAAAACTGAACAGCCAGCCACAAAAGAAACTTCAATGAAAAACAAACCAGACTTTAAAGCACTGACGGATT
CTAATGCCATTTTATATCCATCTTTGGCATCAAATGCTTCTAATCATAATAGTCATGTGGTGGATATGCTAAGGAAAAATGAAGGTCCTCACACTTCAGCAAATGTAGGTGTTCTAAGTAGTTGCCTG
GATGTAAGAACAGTAATTCCTGAAACATCTGTATCCAGTACTGTTTCCAGCACACAAACTATGGTAACCCAGCAGACCATTAAAACTGAATCATCCAGTACAAATGGGGCAGTTGTTAAAGATGAAAC
TTCACTAACAACATTCAGTACCAAATCTGAAGTTGATGAAACATATGCACTGCCTGCAACGAAGATCAGCCGTGTAGAGACACATGCTACAGCAACGCCGTTTTCTAAAGAGACTCCTTCAAATCCAG
TGGCCACAGTGAAAGCGGGAGAACGACAATGGTGTGATGTGGGAATTTTTAAAAATAATACAGCTTTGGTGAGCCAGTTTTATTTGCTGCCAAAAGGGAAGCAAAGCATCTCAAAGGTAGGAAATGCA
GATGTACCTGACTACAGCTTGCTTAAGAAACAAGATCTTGTTCCAGGCACAGGATACAGATTCAGGGTTGCTGCAATCAATGGTTGTGGGATAGGTCCTTTCAGCAAAATCAGTGAATTTAAAACTTG
TATTCCTGGTTTTCCTGGAGCTCCTTCTGCAGTCAGAATTTCAAAGAATGTTGAAGGTATCCACCTTTCCTGGGAACCTCCAACCTCACCTTCTGGAAATATTTTGGAATATTCAGCCTACTTGGCTA
TCCGCACAGCACAGATACAAGATAATCCAAGTCAACTTGTGTTCATGAGGATTTATTGTGGTCTTAAGACATCATGTATAGTAACTGCTGGGCAACTTGCAAATGCACATATTGATTATACATCCAGG
CCTGCCATTGTGTTCAGGATATCAGCAAAGAATGAAAAGGGATATGGACCAGCTACACAAGTTCGGTGGCTTCAAGGTAACAATAAGAAAGCACCTTTAAATTGAATTGGTTTTTTTACTGAAGCTAT
TGTGATGATGATTATTTATTAGTAACTGGTTATGAAGATTTGTCATTTAAAAGAGTATTCTCTGGCTGTATTTCCAGCAGTTATGAACTTGAGTTTGTAAATTGTTCTTAAAATGTATTTGCTGAATT
ATAGATCCAAATAAAAGAAAAGAAGCAAAGACTCTCTGAAAATTAGTATATGAGTTCTTCCTTACAGATATAGCTCTTTTATAAAGAAAAACAGTGAAATTAAGATAAAAGCTAGAAAGCTTTATTAC
CCCAATATCTTTTATAAGGGCTGTGTAACCCAGTCATCCTAGAGTTATTGAGATGATTCTGGTAACTGGCTGTTGTATACTATGCTGTCTTATATAGTAAATGTTCTCTACATTGTAAATGTCCTACC
TTTGAGTACTCCTTCTATCTTTATTCTATATGAGCAGTGTTCCTCTAACAACTGTCTTCTATTGGATAATATGTGTGATACTATAATAATTCTAATAGTTATTTGATTCCTTTCTTTGTTTACAGTTA
GCACAGAGCTTAAGAAATTAAAAAAGAGGCAAGTTTAGAAACTGCTTTTGAACTTTTATTATTTTCCAAGAATCATGGTAAAATACAACAAGAACAATGAGTTTTCTTGATTCTTACCAGGCCAATAT
ATTTGAATATATTTTTGGCCAAAGCACTTAACTTATCTGGCCCTCATTTTCCTCATAACAGATGAGGGAGTTAAAGCAGTTTATCTTTTAGGTCCCTTTCAGCACTAAGGTTTTGTGTTTTTAGTAGA
AGTGAAGTATGTCCCTGAACATTTTCATCTGTCTTAATGGCTCTAATTTTGCTTTTGCTAAAATTAAAATCTTCATAATTGAATTCAAAATTAAAGTATATGTCCTCCTATTGGAGAAAAAAACAAGC
ACCTTAACAGGACACAAGTTTTAAAATAGTGTTTTAAACATTTGTAAGATTTTTGTAAATGCTCTAAATGTTTTATTTTTGCATTGTTTTTACCTTGAAATTGTATAAACTTTTTTACTATGAAAATA
TAAGCATTAGACAGCTAACTCAGGTTCCATTACAACCTTAAAGATACAGATAGGCATTATAAACACTCTGCTACAGGTAACTTGTTTTAAACCTTTTAGGAATTTCATGGTTCCACTGCCTATTTAAA
TCTGGAATTAATATACAGAGCAATAATTGCAGAAAAGATATTTCAAACTAAGAGCTTCAATAACTGCAGGGGCACAGGTCTATCTTTTTTTATACCACATAACCTTATGCCAGTTTAGGTTGACTGAG
TAGCTATGTCCTCAAATTTCATGTATGATACCCCCCAGCAAAGATGGATTTAATTGTGCAGAATTGATATATATGTGTGTTCCAGTTACTAATTTAAAGTGTATAGAATATTTTAATATATAATTTTT
GTAAAGAACTGGGATTTTTATACTACAGTATTTGTAATTAATGTGTCTCACTAATTAAGTTTCTCTTGAAGAAAATATGCAAATTGTTAGACACATAATGAGTGGTTTCCAAACTCTAAAGATAAAAT
AAATGCACTACTATGGTGTTGTTAGAATACCTTTTTTGTGGCTGTATGAATCTTTACTCTTTAAATGTGTACTTTACAATGTTTACAAGGAGCTTCTCTGGTTTGTTATCCCAGCAATGCCCTTGGTG
AGAGCTTCATTCTGCATTTGTTTAATTCATATGCTTTGCTTTTGGCATATGCTTGCTTTTTGCACTAGTAGAATTTTAACTTACCTCATTATTATGTTTGTAATCATTTGTCTAGCTTCTGTAATGTA
TCTGATATAGGCTAAACAAATACTTAACCAAAGTTAAAATACATGGTAAGCAATTTTGCACATATTAAATATTAGGGTTTGTTGTGTATATGTGTATACTTAATTATAAAAGAATATGAATGGAAAGT
TATACTAAAAGTATATGTTTCAAGCCCAGTTATTTTAAAGATCTATTGCTTTAATAGAAAAAGTTTGGCTTTTAACCCTTTCTTCTCTGCATTAATTAACAACGTGCATCTTGAAGCCCTTCTCCTGA
TAACAAGGAATAAGTTGATTTTAAGCAAAGGATAGAATATTTGTTTGAGTGTGCACATTTATACCTGTTTAGTATTTGATTCAGTTAAGCCTCCACTCTTCTGGATCAGGAGGTGATTCTGAACCTGT
GGTTCTAACATATGACTTAACTGTTTAGAGGGAAGAGAAGTCTTTCTATACTGAGGGATTTGTTAAAATCATAAATGTTTTTGCCCTGAGACTTAGCCCAGATTCTATTTTTTTTTTTTTTTTGGCAT
TTGTACATTAAGCACCAGTCATATTTATCTCTGTGATAAGGGATTGCTGACTAAAAAATGCCATTAAGAAATCTCTGTGGCTTTGACATTAGTAGTTAATAAGAGATCTTAGAGCTGTGTGCTGATGA
ATAGAATGAATTGGAGCAAATAGCAAGAGAAGTGCATTTAGCTTCTTATGATTTGCACATTTTCTAAATGAAGATCCCTTTGTGTAGCAGTAGGCTGTATCATGCAGATATTTTTCATAGGATTTGCA
CTGAGTTAAATGACTTTCTTTACTCTTCCCAGTCAGGTAAGCAGTTCAAATATAACAAGACTTTGTGCCAGTCCTCTTCTGTGTTCTGCAACTCTGGCTCTCATAAGTAGTAAAAATATTTTTGATGT
TGCATGCTCTCAGAATTATGTTTTCTAAAATATCATATTGGCTTCATTTTAGTTTAATAAACTTCTTTGGCAACTTAATTAGACATAGGGTATATATAAACTCAATTTTATCTGCATTTTTTAAAAAA
TTGAAATAATCTGATTGCATGTATGAAGGACTCCTGCCTCATTACCCAATTACATAAATACAATTATCTATAGGAAGGTGAAATTGTTGATCTATTATTTCAAAGACTTGTAGACTAGCAAAGATTCA
TTCTGATTAGAAATAAGGTCTATAGCTAAAGATATTTTTATTTTAAAAAATTACAGCCCTTGTAACAAAAATCATTTGTAACATTGGATATGAAGACATTATTAGTATTTAAAATTATTGTAGTCATT
TGATCATAAATGAAGTAGCTTGCAAAATAGACTTGGTCTTTGACCCTTTAAGGTGTAACTGACTGACTGTTGTGTTTTTCAAGACTGATTTTAGGCAGTTTTATGTATCGTGTACCAATGATATGTAA
AATAAAGCACCTTTTCTACTATAAACAA

hide sequence

RefSeq Acc Id:

XM_017019242 ⟹ XP_016874731

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	104,064,531 - 104,098,419 (+)	NCBI

Sequence:

show sequence

GGTGCATTGTGGGCAGAGGGGCGGGGGTTGGGAAGATGGCGGCTCCCAGCCTCCTCAACTGGAG
GCGAGTTTCTTCCTTCACGGGGCCGGTCCCCCGCGCCCGGCACGGACACCGAGCGGTGGCCATCCGGGAGCTGATGATCATCTTTGGAGGGGGAAATGAGGGCATCGCGGATGAGCTGCACGTCTACA
ACACGGCTACGAATCAGTGGTTTCTGCCAGCTGTTAGAGGAGATATCCCTCCAGGCTGTGCTGCCCATGGATTTGTCTGTGATGGTACCAGAATATTAGTATTTGGGGGAATGGTTGAATATGGAAGA
TACAGCAATGAGTTATATGAGTTACAAGCAAGTCGTTGGTTATGGAAAAAAGTGAAACCCCATCCCCCTCCTTCTGGTTTACCTCCTTGTCCTCGGCTTGGACATAGCTTCTCTTTATATGGTAACAA
ATGCTATTTGTTTGGTGGCCTGGCAAACGAAAGCGAAGATTCAAACAATAATGTTCCCAGATATTTAAATGATTTTTATGAGTTGGAGCTACAGCATGGCTCTGGTGTTGTGGGTTGGAGCATTCCAG
TGACTAAAGGGGTTGTGCCTTCTCCAAGAGAATCCCACACAGCTGTTATATATTGCAAAAAAGATTCTGGAAGTCCTAAAATGTATGTTTTTGGTGGAATGTGTGGTGCTCGCCTGGATGACCTATGG
CAGCTTGACTTAGAAACTATGTCATGGTCAAAACCAGAAACTAAAGGGACAGTGCCACTTCCACGAAGCCTTCATACAGCCAGTGTTATAGGAAACAAGATGTACATTTTTGGTGGATGGGTCCCACA
TAAGGGGGAAAATACTGAGACTTCACCTCATGATTGTGAATGGAGATGTACCAGTTCATTTTCTTACCTAAATCTGGATACAACAGAGTGGACCACCCTAGTATCAGATTCTCAGGAAGATAAAAAAA
ATTCAAGACCAAGACCAAGAGCTGGCCACTGTGCTGTTGCAATCGGCACTCGATTGTATTTTTGGAGTGGAAGAGATGGCTACAAAAAAGCACTGAATAGTCAAGTTTGCTGCAAGGATCTTTGGTAT
CTTGATACTGAGAAACCACCGGCACCATCTCAAGTACAGCTGATCAAAGCCACTACCAACTCCTTTCATGTCAAGTGGGATGAAGTGTCTACAGTTGAGGGCTATCTTTTGCAGTTGAGTACAGACTT
GCCATACCAAGCTGCATCATCAGATTCTTCAGCAGCACCAAATATGCAAGGAGTCAGGATGGACCCTCACAGACAAGGCAGTAATAACATCGTTCCTAACAGTATCAATGATACAATAAACAGCACAA
AAACTGAACAGCCAGCCACAAAAGAAACTTCAATGAAAAACAAACCAGACTTTAAAGCACTGACGGATTCTAATGCCATTTTATATCCATCTTTGGCATCAAATGCTTCTAATCATAATAGTCATGTG
GTGGATATGCTAAGGAAAAATGAAGGTCCTCACACTTCAGCAAATGTAGGTGTTCTAAGTAGTTGCCTGGATGTAAGAACAGTAATTCCTGAAACATCTGTATCCAGTACTGTTTCCAGCACACAAAC
TATGGTAACCCAGCAGACCATTAAAACTGAATCATCCAGTACAAATGGGGCAGTTGTTAAAGATGAAACTTCACTAACAACATTCAGTACCAAATCTGAAGTTGATGAAACATATGCACTGCCTGCAA
CGAAGATCAGCCGTGTAGAGACACATGCTACAGCAACGCCGTTTTCTGTTTGGAGAATCACAGGTATTTCAAGTGCAAAGATCACTGAATTTTTGCTAGTTGTTTTTGGATCTAGAAATGAGCCAGCT
TGGAATGAATTTTTCTGTATTTGCTCCTTTGGAGCAAGTTGTAATGTTACGCTAAAGGAATTACATTTTCTGAGAGAGTCTCTGAAATGACAATGTTCTATAAAATAGCTGGCATTTTAACATATCAC
TGATTGGAAAGCATGCTAACTCCAGCTAGGTTGATAGTACAGAGCTACTGACTTGGAGAATGCCTGTCACTCCTGTGTTTGAATTGGCATCCCTGTTTCACTGTCAGTTGACCTAATCTGTTAAGACT
TTATTTACTTATGAGTTGTTAATGTTGTGGTGTTTATCCAAATACCTACTTGTAGATCACTGCATGGACTTATTAAATCTTGAAATTTTTCGTATATTCAATAAGAGTCTTCATAAATTTTTTTTTCT
CTGA

hide sequence

RefSeq Acc Id:

XM_047428753 ⟹ XP_047284709

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	104,064,531 - 104,098,419 (+)	NCBI

RefSeq Acc Id:

XM_047428754 ⟹ XP_047284710

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	104,064,531 - 104,097,691 (+)	NCBI

RefSeq Acc Id:

XM_054371892 ⟹ XP_054227867

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	12	104,026,224 - 104,060,111 (+)	NCBI

RefSeq Acc Id:

XM_054371893 ⟹ XP_054227868

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	12	104,026,224 - 104,060,111 (+)	NCBI

RefSeq Acc Id:

XM_054371894 ⟹ XP_054227869

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	12	104,026,224 - 104,059,383 (+)	NCBI


Protein RefSeqs	NP_037452	(Get FASTA)	NCBI Sequence Viewer
	XP_016874731	(Get FASTA)	NCBI Sequence Viewer
	XP_047284709	(Get FASTA)	NCBI Sequence Viewer
	XP_047284710	(Get FASTA)	NCBI Sequence Viewer
	XP_054227867	(Get FASTA)	NCBI Sequence Viewer
	XP_054227868	(Get FASTA)	NCBI Sequence Viewer
	XP_054227869	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD27814	(Get FASTA)	NCBI Sequence Viewer
	AAH06558	(Get FASTA)	NCBI Sequence Viewer
	AAH33799	(Get FASTA)	NCBI Sequence Viewer
	BAD97062	(Get FASTA)	NCBI Sequence Viewer
	BAG36252	(Get FASTA)	NCBI Sequence Viewer
	BAG59154	(Get FASTA)	NCBI Sequence Viewer
	EAW97736	(Get FASTA)	NCBI Sequence Viewer
	EAW97737	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000229330
	ENSP00000229330.4
	ENSP00000442942.2
GenBank Protein	Q9Y5Z7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_037452 ⟸ NM_013320

- UniProtKB:

B2R8Q5 (UniProtKB/Swiss-Prot), C0H5X3 (UniProtKB/Swiss-Prot), Q9Y5Z7 (UniProtKB/Swiss-Prot), Q53FE7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTATNQWFLPAVRGDIPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWKKVKPHPPPSGLPPCPRL
GHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGVVPSPRESHTAVIYCKKDSGSPKMYVFGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNK
MYIFGGWVPHKGENTETSPHDCEWRCTSSFSYLNLDTTEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRDGYKKALNSQVCCKDLWYLDTEKPPAPSQVQLIKATTNSFHVKWDEVSTVE
GYLLQLSTDLPYQAASSDSSAAPNMQGVRMDPHRQGSNNIVPNSINDTINSTKTEQPATKETSMKNKPDFKALTDSNAILYPSLASNASNHNSHVVDMLRKNEGPHTSANVGVLSSCLDVRTVIPETS
VSSTVSSTQTMVTQQTIKTESSSTNGAVVKDETSLTTFSTKSEVDETYALPATKISRVETHATATPFSKETPSNPVATVKAGERQWCDVGIFKNNTALVSQFYLLPKGKQSISKVGNADVPDYSLLKK
QDLVPGTGYRFRVAAINGCGIGPFSKISEFKTCIPGFPGAPSAVRISKNVEGIHLSWEPPTSPSGNILEYSAYLAIRTAQIQDNPSQLVFMRIYCGLKTSCIVTAGQLANAHIDYTSRPAIVFRISAK
NEKGYGPATQVRWLQGNNKKAPLN

hide sequence

RefSeq Acc Id:

XP_016874731 ⟸ XM_017019242

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTATNQWFLPAV
RGDIPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWKKVKPHPPPSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGVVPSPRES
HTAVIYCKKDSGSPKMYVFGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENTETSPHDCEWRCTSSFSYLNLDTTEWTTLVSDSQEDKKNSRPRPRAGHCA
VAIGTRLYFWSGRDGYKKALNSQVCCKDLWYLDTEKPPAPSQVQLIKATTNSFHVKWDEVSTVEGYLLQLSTDLPYQAASSDSSAAPNMQGVRMDPHRQGSNNIVPNSINDTINSTKTEQPATKETSM
KNKPDFKALTDSNAILYPSLASNASNHNSHVVDMLRKNEGPHTSANVGVLSSCLDVRTVIPETSVSSTVSSTQTMVTQQTIKTESSSTNGAVVKDETSLTTFSTKSEVDETYALPATKISRVETHATA
TPFSVWRITGISSAKITEFLLVVFGSRNEPAWNEFFCICSFGASCNVTLKELHFLRESLK

hide sequence

Ensembl Acc Id:

ENSP00000229330 ⟸ ENST00000229330

Ensembl Acc Id:

ENSP00000442942 ⟸ ENST00000544223

Ensembl Acc Id:

ENSP00000447952 ⟸ ENST00000550444

Protein Domains

Fibronectin type-III

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Y5Z7-F1-model_v2	AlphaFold	Q9Y5Z7	1-792	view protein structure

RGD ID:

6790132

Promoter ID:

HG_KWN:16504

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000392864, NM_013320, UC001TKI.1, UC009ZUL.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	12	102,982,241 - 102,982,741 (+)	MPROMDB

RGD ID:

7225233

Promoter ID:

EPDNEW_H18362

Type:

initiation region

Name:

HCFC2_1

Description:

host cell factor C2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	104,064,540 - 104,064,600	EPDNEW

Database	Acc Id	Source(s)
COSMIC	HCFC2	COSMIC
Ensembl Genes	ENSG00000111727	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000229330	ENTREZGENE
	ENST00000229330.9	UniProtKB/Swiss-Prot
	ENST00000544223.6	UniProtKB/Swiss-Prot
Gene3D-CATH	2.120.10.80	UniProtKB/Swiss-Prot
	2.60.40.10	UniProtKB/Swiss-Prot
	6.10.250.2590	UniProtKB/Swiss-Prot
GTEx	ENSG00000111727	GTEx
HGNC ID	HGNC:24972	ENTREZGENE
Human Proteome Map	HCFC2	Human Proteome Map
InterPro	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Gal_Oxase/kelch_b-propeller	UniProtKB/Swiss-Prot
	HCF1/2	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Kelch-typ_b-propeller	UniProtKB/Swiss-Prot
	Kelch_1	UniProtKB/Swiss-Prot
KEGG Report	hsa:29915	UniProtKB/Swiss-Prot
NCBI Gene	29915	ENTREZGENE
OMIM	607926	OMIM
PANTHER	PTHR46003	UniProtKB/Swiss-Prot
	PTHR46003:SF2	UniProtKB/Swiss-Prot
Pfam	Kelch_1	UniProtKB/Swiss-Prot
	Kelch_3	UniProtKB/Swiss-Prot
	Kelch_5	UniProtKB/Swiss-Prot
PharmGKB	PA134868925	PharmGKB
PROSITE	FN3	UniProtKB/Swiss-Prot
SMART	FN3	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF117281	UniProtKB/Swiss-Prot
	SSF49265	UniProtKB/Swiss-Prot
	SSF50965	UniProtKB/Swiss-Prot
UniProt	B2R8Q5	ENTREZGENE
	C0H5X3	ENTREZGENE
	F8VU09_HUMAN	UniProtKB/TrEMBL
	HCFC2_HUMAN	UniProtKB/Swiss-Prot
	Q53FE7	ENTREZGENE, UniProtKB/TrEMBL
	Q9Y5Z7	ENTREZGENE
UniProt Secondary	B2R8Q5	UniProtKB/Swiss-Prot
	C0H5X3	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

RGD Manual Annotations