GWAS1615515_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1615515_H (uterine cancer QTL GWAS1615515 (human)) Homo sapiens

Symbol: GWAS1615515_H
Name: uterine cancer QTL GWAS1615515 (human)
RGD ID: 597519441
Trait: uterine cancer
LOD Score: Not Available
P Value: 9.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381551,223,858 - 51,223,859RGD_MAPPER_PIPELINEGRCh38
GRCh371551,516,055 - 51,516,056RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1615515_HHumanuterine cancer  IAGPrs2899472405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:36777996


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
12791128MIR4713HGMIR4713 host gene155103748851293912Human
11084865PIRC66piwi-interacting RNA cluster 66155103758451322397Human
1606587CYP19A1cytochrome P450 family 19 subfamily A member 1155120805751338596Human


Peak: (rs2899472)
Human AssemblyChrPosition (strand)Source
GRCh381551,223,858 - 51,223,859RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597391869GWAS1487943_Hheel bone mineral density QTL GWAS1487943 (human)2e-28heel bone mineral densitybone mineral density (CMO:0001226)155122385851223859Human
597415820GWAS1511894_Hheel bone mineral density QTL GWAS1511894 (human)2e-60heel bone mineral densitybone mineral density (CMO:0001226)155122385851223859Human
597378593GWAS1474667_Hbeta-amyloid 1-42 measurement QTL GWAS1474667 (human)2e-09beta-amyloid 1-42 measurement155122385851223859Human
597439607GWAS1535681_Hestrone measurement QTL GWAS1535681 (human)6e-23estrone measurement155122385851223859Human
597519441GWAS1615515_Huterine cancer QTL GWAS1615515 (human)9e-12uterine cancer155122385851223859Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1615515_H GCST90399740 Uterine cancer 83 Admixed American ancestry female cases, 5,786 Admixed American ancestry female controls, 1,364 East Asian ancestry female cases, 104,200 East Asian ancestry female controls, 6,848 European ancestry female cases, 574,610 European ancestry female controls A 0.2119 9E-12 11.046 rs2899472 0.13963 PMID:36777996
GWAS1775047_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals A 0.2197 2E-24 23.699 rs2899472 0.0109 body height (OBA:VT0001253)
 PMID:36224396
GWAS1474667_H GCST000827 Cerebrospinal fluid AB1-42 levels 172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls A NR 2E-9 8.699 rs2899472 N/A beta-amyloid 1-42 measurement (EFO:0004670)
 PMID:20932310
GWAS1487943_H GCST006979 Heel bone mineral density 426,824 British ancestry individuals C 0.74347 2E-28 27.699 rs2899472 0.0260339 heel bone mineral density (EFO:0009270)
 PMID:30598549
GWAS1511894_H GCST006433 Heel bone mineral density 394,929 European ancestry individuals ? NR 2E-60 59.699 rs2899472 0.0387427 heel bone mineral density (EFO:0009270)
 PMID:30048462
GWAS1535681_H GCST005827 Estrone levels 7,570 European ancestry men A 0.25 6E-23 22.222 rs2899472 2.41 estrone measurement (EFO:0007970)
 PMID:29325096
Database
Acc Id
Source(s)
GWAS Catalog GCST90399740 GWAS Catalog

Note Type Note Reference