GWAS1598977_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1598977_H (BMI-adjusted hip circumference QTL GWAS1598977 (human)) Homo sapiens

Symbol: GWAS1598977_H
Name: BMI-adjusted hip circumference QTL GWAS1598977 (human)
RGD ID: 597502903
Trait: BMI-adjusted hip circumference
Measurement Type: hip circumference   (CMO:0000014)    
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,030,736 - 22,030,737RGD_MAPPER_PIPELINEGRCh38
GRCh37122,357,229 - 22,357,230RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1598977_HHumanhip circumference  IAGPrs3820687405850206 GWAS_CATALOGPMID:34021172

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1598977_HHumanBMI-adjusted hip circumference  IAGPrs3820687405850206 GWAS_CATALOGPMID:34021172

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
5133562LINC00339long intergenic non-protein coding RNA 33912202519122031224Human


Peak: (rs3820687)
Human AssemblyChrPosition (strand)Source
GRCh38122,030,736 - 22,030,737RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597502903GWAS1598977_HBMI-adjusted hip circumference QTL GWAS1598977 (human)3e-10BMI-adjusted hip circumferencehip circumference (CMO:0000014)12203073622030737Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1598977_H GCST012227 Hip circumference adjusted for BMI 186,825 British ancestry men T NR 3E-10 9.523 rs3820687 0.0230769 BMI-adjusted hip circumference (EFO:0008039)
 PMID:34021172
Database
Acc Id
Source(s)
GWAS Catalog GCST012227 GWAS Catalog

Note Type Note Reference