GWAS1593604_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1593604_H (protein measurement QTL GWAS1593604 (human)) Homo sapiens

Symbol: GWAS1593604_H
Name: protein measurement QTL GWAS1593604 (human)
RGD ID: 597497530
Trait: protein measurement
LOD Score: Not Available
P Value: 7.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,379,566 - 58,379,567RGD_MAPPER_PIPELINEGRCh38
GRCh371558,671,765 - 58,671,766RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1593604_HHumanprotein measurement  IAGPrs1601935405850206 GWAS_CATALOGPMID:34648354

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1601935)
Human AssemblyChrPosition (strand)Source
GRCh381558,379,566 - 58,379,567RGD_MAPPER_PIPELINE


1 to 10 of 61 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597443485GWAS1539559_Hfree cholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1539559 (human)3e-411free cholesterol:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155837956658379567Human
597524760GWAS1620834_H1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) measurement QTL GWAS1620834 (human)1e-1181-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) measurement155837956658379567Human
597512859GWAS1608933_Hfree cholesterol in HDL measurement QTL GWAS1608933 (human)1e-200triglycerides in LDL measurement 155837956658379567Human
597502865GWAS1598939_H2-linoleoyl-GPE (18:2) measurement QTL GWAS1598939 (human)2e-112-linoleoyl-GPE (18:2) measurement155837956658379567Human
597441166GWAS1537240_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS1537240 (human)7e-327triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155837956658379567Human
597523342GWAS1619416_Hcholesteryl esters to total lipids in medium VLDL percentage QTL GWAS1619416 (human)2e-16cholesteryl esters to total lipids in medium VLDL percentage 155837956658379567Human
597403912GWAS1499986_Hhigh density lipoprotein cholesterol measurement QTL GWAS1499986 (human)1e-08high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155837956658379567Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597516424GWAS1612498_Hcholesterol to total lipids in medium VLDL percentage QTL GWAS1612498 (human)9e-24cholesterol to total lipids in medium VLDL percentage 155837956658379567Human
597446923GWAS1542997_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1542997 (human)5e-346phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155837956658379567Human

1 to 10 of 61 rows


1 to 20 of 97 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1593604_H GCST90248940 Peflin levels 10,708 European ancestry individuals T 0.66 7E-15 14.155 rs1601935 0.109 protein measurement (EFO:0004747)
 PMID:34648354
GWAS1113068_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals G 0.344 1E-22 22 rs1601935 0.048 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1113069_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals G 0.33 0.000004 5.398 rs1601935 0.08 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1113070_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals G NR 2E-26 25.699 rs1601935 0.047 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1748376_H GCST90093050 Triglyceride levels in chylomicrons and extremely large VLDL 115,082 European ancestry individuals G 0.345362 3E-25 24.523 rs1601935 0.0438758 triglyceride measurement (EFO:0004530)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1750082_H GCST90093036 Phospholipid levels in very small VLDL 115,082 European ancestry individuals G 0.345362 2E-425 424.699 rs1601935 0.188894 phospholipid measurement (EFO:0004639)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1750193_H GCST90093035 Concentration of very small VLDL particles 115,082 European ancestry individuals G 0.345362 7E-368 367.155 rs1601935 0.176041 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758294_H GCST90093032 Free cholesterol levels in very small VLDL 115,082 European ancestry individuals G 0.345362 1E-354 354 rs1601935 0.172105 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758371_H GCST90093046 Total lipid levels in chylomicrons and extremely large VLDL 115,082 European ancestry individuals G 0.345362 2E-12 11.699 rs1601935 0.0296918 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1758604_H GCST90093034 Total lipid levels in very small VLDL 115,082 European ancestry individuals G 0.345362 3E-413 412.523 rs1601935 0.185758 lipid measurement (EFO:0004529)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1759764_H GCST90092828 Average diameter for HDL particles 115,082 European ancestry individuals G 0.345362 2E-436 435.699 rs1601935 0.172638 HDL particle size (OBA:2050115)
 PMID:35213538
GWAS1779456_H GCST90092889 Average diameter for LDL particles 115,082 European ancestry individuals G 0.345362 1E-14 14 rs1601935 0.0330269 LDL particle size (OBA:2050113)
 PMID:35213538
GWAS1484798_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals G 0.344 2E-13 12.699 rs1601935 0.033 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS1484799_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals G NR 2E-15 14.699 rs1601935 0.032 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS1780135_H GCST90093038 Triglyceride levels in very small VLDL 115,082 European ancestry individuals G 0.345362 9E-381 380.046 rs1601935 0.177295 triglyceride measurement (EFO:0004530)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1492510_H GCST90094888 Phosphatidylethanolamine (36:2) levels 650 Amish individuals T 0.663265288 4E-8 7.398 rs1601935 0.29902214 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35393526
GWAS1496343_H GCST002896 Cholesterol, total up to 62,166 European ancestry individuals G 0.36 8E-21 20.097 rs1601935 0.059 total cholesterol measurement (EFO:0004574)
 PMID:25961943
GWAS1499986_H GCST008035 High density lipoprotein cholesterol levels 10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals ? NR 1E-8 8 rs1601935 0.6818313 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:31217584
GWAS1503633_H GCST90102099 Phosphatidylethanolamine (34:2) levels 650 Amish individuals T 0.663265288 2E-7 6.699 rs1601935 0.28775838 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35393526
GWAS1503920_H GCST90102102 Phosphatidylethanolamine (36:4) levels 650 Amish individuals T 0.663265288 3E-8 7.523 rs1601935 0.28865105 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35393526
1 to 20 of 97 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90248940 GWAS Catalog

Note Type Note Reference