GWAS1581342_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1581342_H (gut microbiome measurement QTL GWAS1581342 (human)) Homo sapiens

Symbol: GWAS1581342_H
Name: gut microbiome measurement QTL GWAS1581342 (human)
RGD ID: 597485268
Trait: gut microbiome measurement
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381552,685,005 - 52,685,006RGD_MAPPER_PIPELINEGRCh38
GRCh371552,977,202 - 52,977,203RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1581342_HHumangut microbiome measurement  IAGPrs183754410405850206 GWAS_CATALOGPMID:35115689

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1606264ATOSAatos homolog A155258132152709815Human
38673269LOC105370821uncharacterized LOC105370821155267960552690082Human


Peak: (rs183754410)
Human AssemblyChrPosition (strand)Source
GRCh381552,685,005 - 52,685,006RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597485268GWAS1581342_Hgut microbiome measurement QTL GWAS1581342 (human)3e-08gut microbiome measurement155268500552685006Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1581342_H GCST90032350 Dysgonomonadaceae abundance in stool 5,959 Finnish ancestry individuals T 0.0191984 3E-8 7.523 rs183754410 0.114535 gut microbiome measurement (EFO:0007874)
 PMID:35115689
Database
Acc Id
Source(s)
GWAS Catalog GCST90032350 GWAS Catalog

Note Type Note Reference